SNRPD3

General Information

Gene Name       : SNRPD3
Gene ID             : ENSG00000100028.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SNRPD3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNRPD3ENSG00000100028.11273.33220.61246.97ENCSR000AEF
HepG2SNRPD3ENSG00000100028.11521.62391.28456.45ENCSR985KAT
K562SNRPD3ENSG00000100028.11195.76246.24221.00ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 4155ENCSR552TNUSNRPD3K562ReleasedENCAB860WEEENCSR255QSR  
eCLIPeCLIP: 4204ENCSR038CCVSNRPD3HepG2ReleasedENCAB860WEEENCSR964KMC  






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
SNRPD34155K562ENCSR552TNUENCSR255QSRENCAB860WEEA303-954A1ReleasedENCODE4
SNRPD34204HepG2ENCSR038CCVENCSR964KMCENCAB860WEEA303-954A1ReleasedENCODE4


  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
SNRPD3K562CRISPRBGKcLV21-47,BGKcLV21-48BGKcLV21-1,BGKcLV21-2NotSatisfiedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNRPD3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNRPD3 RNA is bound by 25 proteins.  







eCLIP assay for SNRPD3 is not avaliable on ENCORE database.





25 proteins are bound to SNRPD3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr222500391525003940+3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.690237.46114HepG2DDX3X
chr222496797824968096+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.3453614.42360K562TIA1
chr222496811824968207+3'-UTR,intron-Distal,intron-Proximal3.727728.73107K562UPF1
chr222496803224968140+3'-UTR,intron-Distal,intron-Proximal4.640204.23960HepG2TIAL1
chr222496795624968025+3'-UTR,5'-UTR,CDS,intron-Proximal3.9421318.82977HepG2LARP4
chr222496794324967979+3'-UTR,5'-UTR,intron-Proximal3.800939.96973K562PABPC4
chr222496797724968031+3'-UTR,5'-UTR,CDS,intron-Proximal4.553774.91609K562APOBEC3C
chr222496803124968083+3'-UTR,intron-Proximal4.778554.46521HepG2TIA1
chr222496797924968074+3'-UTR,5'-UTR,CDS,intron-Proximal4.1123641.78497K562PABPC4
chr222496802324968063+3'-UTR,5'-UTR,CDS,intron-Proximal4.3092520.75367HepG2SUB1
chr222496837324968423+3'-UTR,intron-Distal4.134623.46958K562YBX3
chr222496797424968060+3'-UTR,5'-UTR,CDS,intron-Proximal3.346986.27848K562DDX6
chr222496843324968490+3'-UTR,intron-Distal4.028158.76110HepG2UPF1
chr222496802524968081+3'-UTR,5'-UTR,CDS,intron-Proximal4.3691517.07390HepG2LARP4
chr222496796724968058+3'-UTR,5'-UTR,CDS,intron-Proximal3.735209.66151K562NOLC1
chr222496797524968023+3'-UTR,5'-UTR,CDS,intron-Proximal5.7609928.43223HepG2SUB1
chr222496787824967951+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.343804.23869K562GRWD1
chr222496797624968034+3'-UTR,5'-UTR,CDS,intron-Proximal3.420648.57838HepG2DDX55
chr222496840724968483+3'-UTR,intron-Distal4.151153.66583K562AKAP1
chr222495196824952026+5'-UTR3.6707919.67855K562DDX3X
chr222495362524953712+5'-UTR,CDS3.2029210.95944HepG2GRWD1
chr222495363324953710+5'-UTR,CDS3.438544.15299K562GRWD1
chr222495352824953688+5'-UTR,CDS,intron-Proximal3.478663.39008HepG2AQR
chr222495363124953701+5'-UTR,CDS3.501836.77187HepG2DDX55
chr222495362224953761+5'-UTR,CDS,intron-Proximal3.2662542.14058K562DDX3X
chr222495197524952029+5'-UTR3.914883.02371K562EIF3G
chr222495202624952040+5'-UTR,intron-Proximal3.7893914.74019K562DDX3X
chr222495361824953688+5'-UTR,CDS,intron-Proximal3.210465.37861K562GEMIN5
chr222495375824953770+CDS,intron-Proximal4.617964.91614HepG2GRWD1
chr222496398024964029+CDS,intron-Proximal3.336113.20659K562SND1
chr222495367124953708+CDS5.009516.69987K562RPS3
chr222495371424953752+CDS3.364906.35478K562YBX3
chr222495371224953758+CDS5.6175712.69118HepG2GRWD1
chr222496410324964145+CDS,intron-Distal,intron-Proximal4.142213.60623K562APOBEC3C
chr222495371024953770+CDS,intron-Proximal4.473915.29232K562GRWD1
chr222496408124964140+CDS,intron-Distal,intron-Proximal4.733248.83026K562RPS3
chr222495364524953705+CDS3.098016.46594HepG2LARP4
chr222496401924964048+CDS,intron-Proximal4.520994.32605HepG2LARP4
chr222496405424964078+CDS,intron-Proximal3.333864.11795K562YBX3
chr222496407924964143+CDS,intron-Distal,intron-Proximal3.058284.21934K562DDX6
chr222496407224964140+CDS,intron-Distal,intron-Proximal4.6033210.61610HepG2LARP4
chr222496786424967925+CDS,intron-Distal,intron-Proximal3.851554.10684HepG2AQR
chr222496409324964145+CDS,intron-Distal,intron-Proximal3.203433.03966HepG2SND1
chr222496889024968927+intron-Distal3.956094.23488K562FAM120A
chr222499921224999294+5'-UTR,intron-Distal,intron-Proximal3.7589817.11202HepG2DDX3X
chr222496956724969610+intron-Distal4.206403.95192HepG2UPF1
chr222500529725005414+intron-Distal,intron-Proximal3.451663.91530HepG2PRPF4
chr222496887924968946+intron-Distal3.285347.57869HepG2UPF1
chr222500528925005340+intron-Distal,intron-Proximal3.8937811.26755HepG2RBFOX2
chr222499921124999290+5'-UTR,intron-Distal,intron-Proximal3.988075.68852HepG2RPS3
chr222496972024969808+intron-Distal5.082205.14974HepG2UPF1
chr222496876524968864+intron-Distal4.0714610.73443K562UPF1
chr222496927824969312+intron-Distal4.910416.81621K562UPF1
chr222497014524970266+intron-Distal4.251715.03175K562IGF2BP1
chr222497068324970798+intron-Distal4.7244216.97354HepG2UPF1
chr222500537225005434+5'-UTR,intron-Distal5.6543113.88286HepG2RBFOX2
chr222496963424969747+intron-Distal5.5880920.09068K562UPF1
chr222496935724969430+intron-Distal4.8714110.92855K562UPF1
chr222497052724970650+intron-Distal3.947475.69025HepG2UPF1
chr222496920624969255+intron-Distal3.858673.79142K562AKAP1
chr222496909824969144+intron-Distal4.190137.12652K562UPF1
chr222500015825000220+intron-Distal3.579315.82968HepG2CSTF2T
chr222496944824969496+intron-Distal3.799096.55257K562UPF1
chr222497081324970870+intron-Distal4.2177011.39836K562UPF1
chr222499916224999212+5'-UTR,intron-Distal4.1135712.55615HepG2DDX3X
chr222496902624969098+intron-Distal4.045378.24727K562UPF1
chr222495209724952171+intron-Distal,intron-Proximal3.539333.76326HepG2RBFOX2
chr222496909824969128+intron-Distal3.230533.72765HepG2UPF1
chr222496902324969076+intron-Distal4.441019.01880HepG2UPF1
chr222497064324970687+intron-Distal4.948335.15256K562AKAP1
chr222500534025005372+intron-Distal4.1525015.71971HepG2RBFOX2
chr222496886424968974+intron-Distal4.8382813.44564K562UPF1
chr222500557425005616+5'-UTR,intron-Distal4.127123.45219HepG2RBFOX2
chr222497070324970841+intron-Distal6.0507723.55357K562AKAP1
chr222496388124963944+intron-Proximal4.396873.82695HepG2RBM5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNRPD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNRPD3 is not available on ENCORE database.

  • 102 RBPs can affect the levels of SNRPD3.  








The Knockdown/knockout RNA-Seq assay for SNRPD3 is not available on ENCORE database.





102 RBPs can affect the gene expression of SNRPD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNRPD3ENSG00000100028.71493.994301858.50650-0.315004.707103.95450HepG2ACO1
SNRPD3ENSG00000100028.72358.860502902.88870-0.299403.716102.94200HepG2AUH
SNRPD3ENSG00000100028.71113.977401683.27490-0.595602.343801.51860HepG2BCLAF1
SNRPD3ENSG00000100028.73690.251002758.306500.419804.104303.39120HepG2BOP1
SNRPD3ENSG00000100028.72896.658403757.94150-0.375602.382701.48470HepG2CCAR1
SNRPD3ENSG00000100028.73379.900702586.402900.385903.361802.51440HepG2CIRBP
SNRPD3ENSG00000100028.72123.136401858.029500.192302.378501.75390HepG2CKAP4
SNRPD3ENSG00000100028.72118.867701575.905200.427002.145301.47830HepG2CNOT7
SNRPD3ENSG00000100028.72389.843803068.81930-0.360805.316404.47820HepG2CELF1
SNRPD3ENSG00000100028.72052.784203151.90200-0.618604.127303.37590HepG2DDX3X
SNRPD3ENSG00000100028.71660.400402706.90350-0.705104.271203.51690HepG2DDX6
SNRPD3ENSG00000100028.71700.122601995.36070-0.231002.295801.64950HepG2DNAJC21
SNRPD3ENSG00000100028.71748.170901977.79860-0.178002.044701.46760HepG2DNAJC2
SNRPD3ENSG00000100028.71608.312302602.85270-0.694504.955404.17420HepG2EIF2S1
SNRPD3ENSG00000100028.71635.101902876.76800-0.815105.981405.04440HepG2EIF4A3
SNRPD3ENSG00000100028.72343.436503118.31750-0.412103.937602.97600HepG2EIF4G2
SNRPD3ENSG00000100028.72179.066301816.028100.262802.191301.44790HepG2EWSR1
SNRPD3ENSG00000100028.71322.290601696.01760-0.359103.848202.44910HepG2FAM120A
SNRPD3ENSG00000100028.72233.305903032.33970-0.441303.400302.55330HepG2FIP1L1
SNRPD3ENSG00000100028.71621.864002240.75280-0.466305.237204.30590HepG2HNRNPC
SNRPD3ENSG00000100028.72259.773002765.46670-0.291304.099703.24460HepG2HNRNPF
SNRPD3ENSG00000100028.72536.721802225.936900.188502.051001.51970HepG2HNRNPU
SNRPD3ENSG00000100028.72317.788402723.20420-0.232601.970101.35110HepG2IGF2BP1
SNRPD3ENSG00000100028.71623.614402021.94710-0.316502.877001.72210HepG2LARP7
SNRPD3ENSG00000100028.71908.731302902.60950-0.604704.326303.50900HepG2MAGOH
SNRPD3ENSG00000100028.72007.592402987.89060-0.573703.829203.08990HepG2NCBP2
SNRPD3ENSG00000100028.72686.591503271.53760-0.284202.672601.92270HepG2NOL12
SNRPD3ENSG00000100028.71918.789902661.48100-0.472002.761902.04080HepG2PABPC4
SNRPD3ENSG00000100028.72008.876402704.96730-0.429208.531407.56200HepG2PCBP1
SNRPD3ENSG00000100028.7600.468802189.69300-1.8666031.3619028.38660HepG2PCBP2
SNRPD3ENSG00000100028.71043.949601569.21390-0.588009.028806.94150HepG2PKM
SNRPD3ENSG00000100028.73103.964302436.270900.349306.052604.95590HepG2PRPF4
SNRPD3ENSG00000100028.7953.962801469.70480-0.623502.811801.99650HepG2PRPF8
SNRPD3ENSG00000100028.71704.295602752.43770-0.6915019.7242018.51440HepG2PTBP1
SNRPD3ENSG00000100028.72364.388303315.48070-0.487809.215708.26630HepG2PUM1
SNRPD3ENSG00000100028.72328.785602980.88900-0.356204.809204.01920HepG2QKI
SNRPD3ENSG00000100028.72063.706002705.37450-0.390604.535903.69000HepG2RBM25
SNRPD3ENSG00000100028.71944.987703063.17200-0.6553018.3756017.21960HepG2NELFE
SNRPD3ENSG00000100028.72177.667202852.97720-0.389707.293906.36430HepG2RECQL
SNRPD3ENSG00000100028.72382.424602978.95180-0.322402.866702.17280HepG2RPLP0
SNRPD3ENSG00000100028.71370.606301846.43190-0.429904.871304.08160HepG2RPS19
SNRPD3ENSG00000100028.71636.414302248.58210-0.458504.829903.79070HepG2RPS2
SNRPD3ENSG00000100028.74587.188703049.212600.589105.037304.10930HepG2SF3A3
SNRPD3ENSG00000100028.71502.526502711.10520-0.8515011.075109.75110HepG2SF3B1
SNRPD3ENSG00000100028.71902.321602865.58490-0.5911015.3181014.09580HepG2SF3B4
SNRPD3ENSG00000100028.72675.746102311.659000.210903.236402.54930HepG2SMN1
SNRPD3ENSG00000100028.71543.088102153.86500-0.481103.212502.17180HepG2SMNDC1
SNRPD3ENSG00000100028.71981.105503016.62100-0.606604.291403.31020HepG2SNRNP70
SNRPD3ENSG00000100028.72644.200703146.42120-0.250902.727302.22770HepG2SRFBP1
SNRPD3ENSG00000100028.72106.494902716.94890-0.367106.123705.15300HepG2SRSF7
SNRPD3ENSG00000100028.71499.405902433.41840-0.6986021.0437019.78290HepG2SRSF9
SNRPD3ENSG00000100028.72149.980902731.67750-0.345504.248103.64160HepG2SSB
SNRPD3ENSG00000100028.71961.876602470.35030-0.332503.499702.56350HepG2TIA1
SNRPD3ENSG00000100028.73145.055102594.086700.277802.109601.55280HepG2U2AF1
SNRPD3ENSG00000100028.72504.119603230.04600-0.367302.461501.67570HepG2UBE2L3
SNRPD3ENSG00000100028.73380.977002610.786600.372907.554906.64460HepG2UTP3
SNRPD3ENSG00000100028.71531.105902077.80250-0.440502.514701.32050HepG2XRCC5
SNRPD3ENSG00000100028.73687.806102974.087300.310207.273206.49530HepG2ZNF622
SNRPD3ENSG00000100028.73571.327204790.08100-0.423604.268902.72620K562ABCF1
SNRPD3ENSG00000100028.73943.098702768.543300.5101014.1184012.93940K562AGGF1
SNRPD3ENSG00000100028.73590.531302880.832100.317603.230602.52320K562AKAP8L
SNRPD3ENSG00000100028.71672.593202224.69600-0.411507.292005.70840K562BCLAF1
SNRPD3ENSG00000100028.72263.451303016.30880-0.414304.008602.95640K562BOP1
SNRPD3ENSG00000100028.72470.231803336.31000-0.433603.728502.02540K562BUD13
SNRPD3ENSG00000100028.73169.172904115.00400-0.376802.901701.42090K562CKAP4
SNRPD3ENSG00000100028.73527.059704117.45810-0.223302.639501.56020K562CPEB4
SNRPD3ENSG00000100028.72062.385103207.28070-0.6370010.076708.56930K562CPSF6
SNRPD3ENSG00000100028.71292.675101687.76290-0.384804.448203.06840K562CSTF2
SNRPD3ENSG00000100028.72284.548002664.08980-0.221702.457501.32000K562DDX21
SNRPD3ENSG00000100028.71165.552201419.30520-0.284202.243501.31280K562DDX3X
SNRPD3ENSG00000100028.73740.197804260.83630-0.188002.213601.62060K562DDX47
SNRPD3ENSG00000100028.71401.213001834.57220-0.388803.154502.17590K562EFTUD2
SNRPD3ENSG00000100028.72417.318403002.65170-0.312804.342103.46880K562EIF2S2
SNRPD3ENSG00000100028.71027.177801482.82480-0.529705.952404.75740K562EIF4A3
SNRPD3ENSG00000100028.73862.659204569.06940-0.242302.980102.00730K562EIF4G2
SNRPD3ENSG00000100028.72486.466503660.56910-0.558004.726302.54680K562ESF1
SNRPD3ENSG00000100028.71905.264702418.18770-0.343903.530902.07710K562EXOSC5
SNRPD3ENSG00000100028.72169.393903263.17910-0.589007.156305.74710K562FMR1
SNRPD3ENSG00000100028.71817.910402765.77230-0.605407.147705.60800K562FTO
SNRPD3ENSG00000100028.72103.241501542.075600.447607.431406.50330K562FXR1
SNRPD3ENSG00000100028.71188.292501731.48850-0.543104.009003.11910K562G3BP2
SNRPD3ENSG00000100028.72293.982103007.05750-0.390506.056404.40890K562GLRX3
SNRPD3ENSG00000100028.72072.305903062.22690-0.563308.114606.75220K562GPKOW
SNRPD3ENSG00000100028.73379.138104001.50370-0.243902.077201.41530K562GRSF1
SNRPD3ENSG00000100028.71238.411702607.90000-1.0744027.1482025.36340K562HNRNPC
SNRPD3ENSG00000100028.71774.827402328.91020-0.392004.146902.71660K562HNRNPF
SNRPD3ENSG00000100028.73183.417203850.56110-0.274502.611001.58630K562HNRNPL
SNRPD3ENSG00000100028.74643.803502831.742500.713505.781404.36950K562HNRNPM
SNRPD3ENSG00000100028.73855.913603057.152000.334803.802202.81320K562KIF1C
SNRPD3ENSG00000100028.71574.775902614.59430-0.731407.211005.62330K562KRR1
SNRPD3ENSG00000100028.74091.690903424.800700.256602.520301.65960K562MBNL1
SNRPD3ENSG00000100028.72183.636502989.04850-0.453005.666804.38490K562METAP2
SNRPD3ENSG00000100028.73787.719604870.23370-0.362703.355702.11050K562MSI2
SNRPD3ENSG00000100028.72278.264303161.50290-0.4727011.5702010.04260K562MTPAP
SNRPD3ENSG00000100028.72431.449703512.85910-0.5308021.1880019.40630K562NSUN2
SNRPD3ENSG00000100028.7959.636501806.28060-0.9125016.8283014.31270K562PCBP2
SNRPD3ENSG00000100028.71732.231402398.76480-0.469704.341302.32430K562PKM
SNRPD3ENSG00000100028.74334.874302856.728100.601508.988908.05890K562PUS1
SNRPD3ENSG00000100028.73596.266602783.672300.369404.404703.67460K562RBM15
SNRPD3ENSG00000100028.71676.609002080.39160-0.311302.241201.34900K562RPS3
SNRPD3ENSG00000100028.72965.003803466.07910-0.225302.757701.94410K562SF3A3
SNRPD3ENSG00000100028.71932.401102912.05640-0.591606.241404.74780K562SF3B1
SNRPD3ENSG00000100028.72811.210903551.05340-0.337107.710006.23430K562SRPK2
SNRPD3ENSG00000100028.72476.941801933.704000.357103.899603.06560K562SRSF1
SNRPD3ENSG00000100028.73057.623904132.12200-0.434504.227502.61680K562STAU1
SNRPD3ENSG00000100028.7969.029601728.88930-0.835208.562806.73590K562SUPV3L1
SNRPD3ENSG00000100028.72905.627702366.463600.296003.209402.32460K562SYNCRIP
SNRPD3ENSG00000100028.71615.204201956.95170-0.276901.931801.33380K562TARDBP
SNRPD3ENSG00000100028.71959.921402389.36700-0.285802.433701.55640K562TRIM56
SNRPD3ENSG00000100028.73036.005704028.46350-0.408103.688302.02580K562TRIP6
SNRPD3ENSG00000100028.71395.043201829.62180-0.391202.919801.86910K562UCHL5
SNRPD3ENSG00000100028.72630.900103724.74740-0.5016013.4918012.04980K562UPF1
SNRPD3ENSG00000100028.72837.093803607.45060-0.346602.735001.54130K562UTP3
SNRPD3ENSG00000100028.72249.197403187.16750-0.502907.527906.04160K562WDR3
SNRPD3ENSG00000100028.72928.681203903.03230-0.414304.840303.65080K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNRPD3 is not available on ENCORE database.





2 RBPs can affect the splicing of SNRPD3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSSNRPD3ENSG00000100028.7chr22+249519992495219624951999249520252495362424954054-0.156000.000120.01939shorterK562RBM22
MXESNRPD3ENSG00000100028.7chr22+24953624249537682496395124964144249514702495203924967883249687400.072000.000620.017901includedHepG2DDX55

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNRPD3 is not avaliable on ENCORE database.