SLC28A1

General Information

Gene Name       : SLC28A1
Gene ID             : ENSG00000156222.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SLC28A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC28A1ENSG00000156222.110.000.000.00ENCSR000AEF
HepG2SLC28A1ENSG00000156222.110.150.330.24ENCSR985KAT
K562SLC28A1ENSG00000156222.110.000.020.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC28A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC28A1 RNA is bound by 2 proteins.  







eCLIP assay for SLC28A1 is not avaliable on ENCORE database.





2 proteins are bound to SLC28A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr158548376085483904+intron-Distal3.872344.78196HepG2PTBP1
chr158543341085433483+intron-Distal3.480076.79039HepG2PTBP1
chr158543304985433095+intron-Distal3.642624.78196HepG2PTBP1
chr158543263785432697+intron-Distal3.472105.80375HepG2PTBP1
chr158543324185433277+intron-Distal3.365403.83822HepG2PTBP1
chr158542962385429673+intron-Distal4.083184.13881HepG2PRPF4
chr158543350685433561+intron-Distal4.891086.76922HepG2PTBP1
chr158543211785432194+intron-Distal,intron-Proximal3.904406.24904HepG2PTBP1
chr158543310285433139+intron-Distal4.927156.76922HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC28A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC28A1 is not available on ENCORE database.

  • 127 RBPs can affect the levels of SLC28A1.  








The Knockdown/knockout RNA-Seq assay for SLC28A1 is not available on ENCORE database.





127 RBPs can affect the gene expression of SLC28A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC28A1ENSG00000156222.713.4153048.47130-1.853303.759901.76340HepG2AARS
SLC28A1ENSG00000156222.739.8630099.61920-1.321404.512703.17470HepG2AATF
SLC28A1ENSG00000156222.739.87190139.37770-1.8056011.9553010.88130HepG2ACO1
SLC28A1ENSG00000156222.736.89800569.43450-3.9479068.1697066.11710HepG2AKAP1
SLC28A1ENSG00000156222.766.07240154.32410-1.223805.985304.48650HepG2AKAP8
SLC28A1ENSG00000156222.7178.36520471.14810-1.4013015.1336013.44950HepG2ASCC1
SLC28A1ENSG00000156222.7342.9216042.968902.9964016.5576014.65980HepG2BCLAF1
SLC28A1ENSG00000156222.758.5763013.022502.169205.766004.94110HepG2BOP1
SLC28A1ENSG00000156222.7216.4188076.510001.500005.182303.52120HepG2BUD13
SLC28A1ENSG00000156222.7144.3068071.356301.015904.535303.57900HepG2CALR
SLC28A1ENSG00000156222.7660.80060447.626700.561804.013703.09190HepG2CIRBP
SLC28A1ENSG00000156222.793.87710139.32290-0.569602.123701.52930HepG2CKAP4
SLC28A1ENSG00000156222.710.2085088.47810-3.115604.946203.91800HepG2CNOT7
SLC28A1ENSG00000156222.7117.6689011.953103.2992018.0950016.52080HepG2CPSF6
SLC28A1ENSG00000156222.7184.4362084.085701.133103.817502.52360HepG2CPSF7
SLC28A1ENSG00000156222.76.3074030.54340-2.275703.581502.37300HepG2CSTF2
SLC28A1ENSG00000156222.742.18830113.81240-1.431706.479205.57420HepG2CELF1
SLC28A1ENSG00000156222.7178.74610122.378500.546502.431601.73050HepG2DAZAP1
SLC28A1ENSG00000156222.7404.61080109.701101.8829024.3345022.60620HepG2DDX21
SLC28A1ENSG00000156222.7167.00180107.524300.635102.497001.63250HepG2DDX24
SLC28A1ENSG00000156222.7188.51620545.45130-1.5328018.7866017.30720HepG2DDX3X
SLC28A1ENSG00000156222.7138.2278082.282300.748302.722501.43550HepG2DDX47
SLC28A1ENSG00000156222.755.8161013.574402.039704.492303.25720HepG2DDX59
SLC28A1ENSG00000156222.7330.5767082.231802.007106.470704.98220HepG2DDX5
SLC28A1ENSG00000156222.7140.19540468.61030-1.7409019.5263018.08070HepG2DDX6
SLC28A1ENSG00000156222.7227.5351052.888802.105008.671207.03550HepG2DHX30
SLC28A1ENSG00000156222.7332.07220133.340401.3163014.1385012.85380HepG2DKC1
SLC28A1ENSG00000156222.7100.0292054.833700.867202.860502.14860HepG2DNAJC21
SLC28A1ENSG00000156222.7140.5848054.356901.370808.458507.39400HepG2DNAJC2
SLC28A1ENSG00000156222.7734.63700450.430500.705606.085405.22480HepG2EIF2S1
SLC28A1ENSG00000156222.7817.65870497.751600.716005.977405.04110HepG2EIF4A3
SLC28A1ENSG00000156222.799.69450484.68270-2.2815025.8031023.87030HepG2EIF4B
SLC28A1ENSG00000156222.7180.76590120.732000.582202.414101.62330HepG2EIF4G1
SLC28A1ENSG00000156222.7281.36560115.653901.282505.168504.07590HepG2EIF4G2
SLC28A1ENSG00000156222.725.16760103.19430-2.035704.698403.71640HepG2FIP1L1
SLC28A1ENSG00000156222.788.7445040.471301.132702.844901.55850HepG2FKBP4
SLC28A1ENSG00000156222.748.5710011.978202.019603.148002.06310HepG2FTO
SLC28A1ENSG00000156222.775.23260132.68700-0.818602.694001.59170HepG2FUS
SLC28A1ENSG00000156222.782.92220502.29230-2.5987040.7213038.46630HepG2FXR1
SLC28A1ENSG00000156222.7202.39400465.90670-1.202906.280705.29860HepG2G3BP1
SLC28A1ENSG00000156222.7188.3545086.994201.114405.560204.10770HepG2GNB2L1
SLC28A1ENSG00000156222.7347.9328013.543704.6830058.3260055.84360HepG2GPKOW
SLC28A1ENSG00000156222.727.0690081.93570-1.597802.410301.37050HepG2GRSF1
SLC28A1ENSG00000156222.7106.5633061.579200.791102.161901.54030HepG2HNRNPC
SLC28A1ENSG00000156222.7220.4514076.650801.524009.658706.99690HepG2HNRNPD
SLC28A1ENSG00000156222.797.4789024.053702.018707.798706.67380HepG2HNRNPF
SLC28A1ENSG00000156222.7142.22670471.87330-1.7302021.7327019.95020HepG2HNRNPK
SLC28A1ENSG00000156222.7613.7928012.925505.56940111.10890108.22290HepG2HNRNPLL
SLC28A1ENSG00000156222.731.3840071.14740-1.180802.882201.91200HepG2HNRNPM
SLC28A1ENSG00000156222.731.1660061.17190-0.972902.494701.91830HepG2HNRNPU
SLC28A1ENSG00000156222.7169.1774023.684102.8364022.3278020.50970HepG2IGF2BP1
SLC28A1ENSG00000156222.759.45770444.48550-2.9022019.2239016.90400HepG2IGF2BP3
SLC28A1ENSG00000156222.7277.68290127.393501.124006.717005.17010HepG2KIF1C
SLC28A1ENSG00000156222.798.97080167.91300-0.762602.544101.35680HepG2KRR1
SLC28A1ENSG00000156222.735.1571085.22870-1.277503.992402.62370HepG2LARP7
SLC28A1ENSG00000156222.7344.82200502.46810-0.543203.224402.51710HepG2MAGOH
SLC28A1ENSG00000156222.7146.04280505.26700-1.7907021.1435019.52940HepG2MATR3
SLC28A1ENSG00000156222.715.8704075.10090-2.242503.363102.20710HepG2METAP2
SLC28A1ENSG00000156222.7210.5250083.435701.335207.737506.44870HepG2MSI2
SLC28A1ENSG00000156222.7224.1438013.195704.0862030.7348027.78290HepG2MTPAP
SLC28A1ENSG00000156222.7224.6409070.081101.680404.783703.19060HepG2NAA15
SLC28A1ENSG00000156222.7271.10600517.15810-0.931708.007406.95630HepG2NCBP2
SLC28A1ENSG00000156222.7167.1393077.063901.116805.758803.70200HepG2NIP7
SLC28A1ENSG00000156222.770.71590159.24530-1.171104.322102.53190HepG2NKRF
SLC28A1ENSG00000156222.7235.6545011.465404.3612042.6928040.35940HepG2NSUN2
SLC28A1ENSG00000156222.7258.4972080.920501.675505.882604.55440HepG2PABPC1
SLC28A1ENSG00000156222.7800.05160460.513200.796807.761806.56840HepG2PABPC4
SLC28A1ENSG00000156222.716.3585060.54660-1.888005.605204.45880HepG2PARN
SLC28A1ENSG00000156222.791.87930491.77900-2.4202050.8529048.87280HepG2PCBP1
SLC28A1ENSG00000156222.7326.65280132.533401.301303.638401.64100HepG2PES1
SLC28A1ENSG00000156222.7204.1473081.776501.319807.393904.77010HepG2PHF6
SLC28A1ENSG00000156222.7242.5952054.560002.1525024.2239022.21740HepG2PPIL4
SLC28A1ENSG00000156222.7181.4289048.813601.8939015.5728013.97920HepG2PRPF4
SLC28A1ENSG00000156222.753.06830132.04620-1.315105.349903.70000HepG2PRPF6
SLC28A1ENSG00000156222.759.49640500.42030-3.0723068.8370066.97790HepG2PTBP1
SLC28A1ENSG00000156222.7431.64980115.838701.8976018.9916017.61470HepG2PUF60
SLC28A1ENSG00000156222.722.82340122.96720-2.4297015.2588014.09740HepG2PUM1
SLC28A1ENSG00000156222.762.04370122.87780-0.985903.747402.97240HepG2PUM2
SLC28A1ENSG00000156222.7201.00850141.961600.501702.267101.69660HepG2PUS1
SLC28A1ENSG00000156222.7329.23840541.93190-0.719006.904805.98320HepG2QKI
SLC28A1ENSG00000156222.730.80440121.21710-1.976407.242606.13140HepG2RAVER1
SLC28A1ENSG00000156222.77.1580082.97350-3.535009.500608.67020HepG2RBM22
SLC28A1ENSG00000156222.7136.23490491.85150-1.8521028.7113026.71580HepG2RBM25
SLC28A1ENSG00000156222.718.19500102.77200-2.4978011.169109.14470HepG2RBM27
SLC28A1ENSG00000156222.7115.41990556.90580-2.2705047.2440045.63640HepG2NELFE
SLC28A1ENSG00000156222.764.50770518.70730-3.0074066.3120064.15620HepG2RECQL
SLC28A1ENSG00000156222.7104.6705025.940102.012507.850906.79140HepG2RPLP0
SLC28A1ENSG00000156222.711.4138069.78950-2.612204.282603.53350HepG2RPS19
SLC28A1ENSG00000156222.7159.7377089.003400.843702.816502.01050HepG2RPS3A
SLC28A1ENSG00000156222.736.9898096.75290-1.387205.112203.63790HepG2RPS5
SLC28A1ENSG00000156222.76.5441037.09700-2.503004.300303.34300HepG2RRP9
SLC28A1ENSG00000156222.7332.8649054.474802.6112042.3633040.30150HepG2SAFB2
SLC28A1ENSG00000156222.7131.3757070.076500.906603.467902.41170HepG2SERBP1
SLC28A1ENSG00000156222.784.95000157.32730-0.889103.956403.14400HepG2SF3A3
SLC28A1ENSG00000156222.788.8922012.790202.7969011.3458010.00640HepG2SF3B1
SLC28A1ENSG00000156222.7109.31030520.97210-2.2528044.4841042.66560HepG2SF3B4
SLC28A1ENSG00000156222.7422.23840111.069801.9265035.1118033.19510HepG2SLBP
SLC28A1ENSG00000156222.7449.81380118.264801.927205.079402.96680HepG2SLTM
SLC28A1ENSG00000156222.718.8060063.52440-1.756105.488304.63470HepG2SMN1
SLC28A1ENSG00000156222.741.11730123.58430-1.587707.507905.87920HepG2SMNDC1
SLC28A1ENSG00000156222.7119.9645051.670501.215102.701701.41060HepG2SNRNP200
SLC28A1ENSG00000156222.715.14880543.79430-5.16580118.78330116.82160HepG2SRSF1
SLC28A1ENSG00000156222.749.69340114.37300-1.202605.022304.21890HepG2SRSF5
SLC28A1ENSG00000156222.778.4439023.638501.730402.202301.57360HepG2SRSF7
SLC28A1ENSG00000156222.7256.47020442.41620-0.786608.448807.57820HepG2SRSF9
SLC28A1ENSG00000156222.7350.3375081.387902.1058027.3679026.13110HepG2SSB
SLC28A1ENSG00000156222.751.48280167.41640-1.7013010.904708.63640HepG2SSRP1
SLC28A1ENSG00000156222.7248.8534068.851001.853602.979801.70160HepG2STAU1
SLC28A1ENSG00000156222.7193.53450113.279700.772602.491901.35510HepG2SUB1
SLC28A1ENSG00000156222.727.44140130.07430-2.2449013.6202012.41180HepG2SUCLG1
SLC28A1ENSG00000156222.7280.1010069.610602.0085020.7765018.45290HepG2SUPT6H
SLC28A1ENSG00000156222.7190.4160048.403201.975906.298505.33840HepG2SUPV3L1
SLC28A1ENSG00000156222.7200.26230488.81750-1.2874018.0447016.79380HepG2TAF15
SLC28A1ENSG00000156222.759.1694012.614602.229705.980904.97180HepG2TARDBP
SLC28A1ENSG00000156222.773.91470164.44170-1.153603.986002.72100HepG2TBRG4
SLC28A1ENSG00000156222.746.83970113.16830-1.272704.919903.72080HepG2TUFM
SLC28A1ENSG00000156222.748.4265088.22870-0.865501.984701.44290HepG2U2AF1
SLC28A1ENSG00000156222.7210.41960119.786200.812702.909402.05190HepG2UBE2L3
SLC28A1ENSG00000156222.72.8246028.59180-3.339505.301404.24470HepG2UCHL5
SLC28A1ENSG00000156222.7366.83540139.524701.394504.230003.39630HepG2UPF1
SLC28A1ENSG00000156222.7122.5414044.316601.467204.338503.06450HepG2UPF2
SLC28A1ENSG00000156222.767.92470134.70640-0.987804.260203.54250HepG2UTP3
SLC28A1ENSG00000156222.7140.8893079.729300.821302.725801.64030HepG2XPO5
SLC28A1ENSG00000156222.722.76620119.19530-2.388409.847407.57920HepG2XRCC5
SLC28A1ENSG00000156222.734.53710133.30470-1.9485010.249008.35190HepG2XRCC6
SLC28A1ENSG00000156222.7194.9766047.647802.0327012.0456010.55510HepG2XRN2
SLC28A1ENSG00000156222.7547.72990153.451201.8356032.2372030.89720HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC28A1 is not available on ENCORE database.





7 RBPs can affect the splicing of SLC28A1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESLC28A1ENSG00000156222.7chr15+8542990285430018854278928542798285430975854310870.305000.004150.04584includedHepG2U2AF2
SESLC28A1ENSG00000156222.7chr15+8542990285430018854278928542798285430975854310870.654000.002030.07631includedHepG2SFPQ
SESLC28A1ENSG00000156222.7chr15+854306168543081785429902854300188543097585431087-0.214000.001020.04347excludedHepG2MATR3
SESLC28A1ENSG00000156222.7chr15+8542990285430018854278928542798285430975854310870.312000.000520.06447includedHepG2HNRNPUL1
SESLC28A1ENSG00000156222.7chr15+8542990285430018854278928542798285430975854310870.453000.000040.00871includedHepG2RBFOX2
SESLC28A1ENSG00000156222.7chr15+854306168543081785427891854279828543097585431087-0.125000.000970.09347excludedHepG2KHSRP
MXESLC28A1ENSG00000156222.7chr15+85429902854300188543061685430817854278928542798285430975854310870.227000.000200.008051includedHepG2MATR3
MXESLC28A1ENSG00000156222.7chr15+85429902854300188543061685430817854278918542798285430975854310870.160000.000040.010391includedHepG2KHSRP
MXESLC28A1ENSG00000156222.7chr15+85429902854300188543061685430817854278928542798285430975854310870.368000.000040.011641includedHepG2PRPF4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC28A1 is not avaliable on ENCORE database.