RDX

General Information

Gene Name       : RDX
Gene ID             : ENSG00000137710.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RDX)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RDXENSG00000137710.1528.2932.2630.27ENCSR000AEF
HepG2RDXENSG00000137710.1546.9345.6646.30ENCSR985KAT
K562RDXENSG00000137710.1536.1536.5236.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RDX is not avaliable on ENCORE database.



Proteins bound to RNA
  • RDX RNA is bound by 21 proteins.  







eCLIP assay for RDX is not avaliable on ENCORE database.





21 proteins are bound to RDX RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11110104161110104205-3'-UTR,CDS,intron-Distal,intron-Proximal4.124267.16955K562UCHL5
chr11110101624110101638-3'-UTR,intron-Distal5.6160928.36718K562LIN28B
chr11110101244110101319-3'-UTR,intron-Distal5.5525045.84808K562EIF4G2
chr11110101246110101365-3'-UTR,intron-Distal3.814505.39144K562SRSF7
chr11110124670110124746-3'-UTR,CDS,intron-Distal,intron-Proximal3.234657.06390K562ZNF622
chr11110101890110101941-3'-UTR,intron-Distal3.131345.59934K562FAM120A
chr11110101567110101658-3'-UTR,intron-Distal5.0370312.63005HepG2LIN28B
chr11110108240110108368-3'-UTR,CDS,intron-Distal4.383987.50845HepG2GRWD1
chr11110108303110108357-3'-UTR,CDS,intron-Distal3.9148113.02403K562UCHL5
chr11110118429110118515-3'-UTR,5'-UTR,CDS,intron-Distal3.8326012.10505K562UCHL5
chr11110150404110150470-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.565265.35682HepG2GRWD1
chr11110143263110143344-3'-UTR,5'-UTR,CDS,intron-Distal3.9663210.35753HepG2BCLAF1
chr11110118433110118486-3'-UTR,5'-UTR,CDS,intron-Distal4.159556.84316HepG2BCLAF1
chr11110101237110101307-3'-UTR,intron-Distal3.246644.67068K562FAM120A
chr11110135503110135553-3'-UTR,CDS,intron-Distal,intron-Proximal3.545145.76104HepG2BCLAF1
chr11110128490110128516-3'-UTR,CDS,intron-Distal,intron-Proximal4.498599.14010HepG2BCLAF1
chr11110108318110108369-3'-UTR,CDS,intron-Distal4.000197.65975HepG2BCLAF1
chr11110108264110108377-3'-UTR,CDS,intron-Distal3.6523319.98076K562ZNF622
chr11110101319110101387-3'-UTR,intron-Distal4.8946858.78089K562EIF4G2
chr11110106826110106890-3'-UTR,CDS,intron-Distal4.495839.20390K562UCHL5
chr11110106823110106918-3'-UTR,CDS,intron-Distal,intron-Proximal4.967635.10317K562TRA2A
chr11110150404110150447-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.484784.66036K562PUM1
chr11110143254110143345-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.617289.80107K562DDX24
chr11110128564110128642-3'-UTR,CDS,intron-Distal,intron-Proximal3.9516512.73431K562ZNF622
chr11110143267110143321-3'-UTR,5'-UTR,CDS,intron-Distal3.8888611.09639K562ZNF622
chr11110103971110104037-3'-UTR,CDS,intron-Distal4.076284.01763HepG2GRWD1
chr11110128491110128515-3'-UTR,CDS,intron-Distal,intron-Proximal3.173813.80299HepG2GRWD1
chr11110128568110128638-3'-UTR,CDS,intron-Distal3.0757611.23527K562UCHL5
chr11110134690110134739-3'-UTR,CDS,intron-Distal,intron-Proximal3.031454.85577K562ZNF622
chr11110126078110126111-3'-UTR,CDS,intron-Distal,intron-Proximal4.310057.82199HepG2BCLAF1
chr11110108254110108376-3'-UTR,CDS,intron-Distal3.808263.55997K562SRSF7
chr11110128517110128546-3'-UTR,CDS,intron-Distal3.574596.06436HepG2BCLAF1
chr11110126080110126097-3'-UTR,CDS,intron-Distal4.345847.93948K562ZNF622
chr11110101224110101251-3'-UTR,intron-Distal4.408244.86695K562IGF2BP1
chr11110101434110101477-3'-UTR,intron-Distal3.534514.84679K562IGF2BP1
chr11110118531110118552-3'-UTR,5'-UTR,CDS,intron-Distal4.426084.10264K562ZNF622
chr11110101259110101330-3'-UTR,intron-Distal3.160635.34980HepG2FUBP3
chr11110150403110150450-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.198025.33841K562DDX24
chr11110128829110128854-3'-UTR,CDS,intron-Distal,intron-Proximal3.741304.93978HepG2BCLAF1
chr11110128498110128553-3'-UTR,CDS,intron-Distal4.655304.66036K562PUM1
chr11110101638110101670-3'-UTR,intron-Distal3.278058.58659K562LIN28B
chr11110101558110101624-3'-UTR,intron-Distal6.0799737.60268K562LIN28B
chr11110108357110108377-3'-UTR,CDS,intron-Distal3.955745.42720K562UCHL5
chr11110102246110102281-3'-UTR,intron-Distal,intron-Proximal3.423175.95210K562TARDBP
chr11110102633110102727-3'-UTR,CDS,intron-Distal3.618705.29881K562ZNF800
chr11110134737110134820-3'-UTR,CDS,intron-Distal,intron-Proximal3.182888.17760K562UCHL5
chr11110108225110108303-3'-UTR,CDS,intron-Distal3.3803914.20334K562UCHL5
chr11110101251110101352-3'-UTR,intron-Distal7.2642036.67152K562IGF2BP1
chr11110101205110101361-3'-UTR,intron-Distal6.02949400.00000K562TARDBP
chr11110128490110128519-3'-UTR,CDS,intron-Distal,intron-Proximal5.077796.32937K562LIN28B
chr11110128491110128564-3'-UTR,CDS,intron-Distal,intron-Proximal4.1639716.44747K562ZNF622
chr11110128600110128638-3'-UTR,CDS,intron-Distal3.927918.51432HepG2BCLAF1
chr11110102494110102575-3'-UTR,intron-Distal,intron-Proximal3.554107.58656HepG2BCLAF1
chr11110150404110150442-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.102546.37937HepG2BCLAF1
chr11110101210110101342-3'-UTR,intron-Distal3.9007637.68434K562UPF1
chr11110128511110128568-3'-UTR,CDS,intron-Distal4.4248414.48434K562UCHL5
chr11110128557110128600-3'-UTR,CDS,intron-Distal3.631618.66838HepG2BCLAF1
chr11110104078110104159-3'-UTR,CDS,intron-Distal4.239993.79347HepG2GRWD1
chr11110150403110150441-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.912523.26507K562MTPAP
chr11110128897110128911-3'-UTR,CDS,intron-Distal,intron-Proximal4.377103.71570HepG2BCLAF1
chr11110126083110126111-3'-UTR,CDS,intron-Distal,intron-Proximal5.016435.66624K562LIN28B
chr11110103966110104085-3'-UTR,CDS,intron-Distal4.1118412.52201HepG2BCLAF1
chr11110108255110108318-3'-UTR,CDS,intron-Distal5.0303413.15686HepG2BCLAF1
chr11110126097110126110-3'-UTR,CDS,intron-Distal4.002089.42122K562ZNF622
chr11110124698110124835-3'-UTR,CDS,intron-Distal,intron-Proximal3.866358.81620HepG2BCLAF1
chr11110128515110128569-3'-UTR,CDS,intron-Distal4.198833.31827HepG2GRWD1
chr11110104180110104205-3'-UTR,CDS,intron-Distal,intron-Proximal3.287664.33023K562ZNF622
chr11110104099110104180-3'-UTR,CDS,intron-Distal3.003166.86379K562ZNF622
chr11110134692110134742-3'-UTR,CDS,intron-Distal,intron-Proximal3.958703.98564K562LIN28B
chr11110118515110118557-3'-UTR,5'-UTR,CDS,intron-Distal3.196136.02988K562UCHL5
chr11110150404110150449-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.053494.62149K562ZNF800
chr11110101513110101557-3'-UTR,intron-Distal4.693865.00488K562LIN28B
chr11110167204110167324-5'-UTR,intron-Distal,intron-Proximal3.954387.50590K562DDX3X
chr11110154668110154814-intron-Distal4.125204.07352K562KHSRP
chr11110162018110162107-intron-Distal4.775685.41525HepG2PCBP2
chr11110117984110118035-intron-Distal4.450013.66668K562KHSRP
chr11110134549110134598-intron-Distal,intron-Proximal3.127143.20348K562PRPF8
chr11110163827110163897-intron-Distal3.609103.02234K562KHSRP
chr11110128695110128786-intron-Distal,intron-Proximal3.918093.45805K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RDX is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RDX is not available on ENCORE database.

  • 103 RBPs can affect the levels of RDX.  








The Knockdown/knockout RNA-Seq assay for RDX is not available on ENCORE database.





103 RBPs can affect the gene expression of RDX :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RDXENSG00000137710.102191.675001417.389100.628706.307404.75800HepG2AATF
RDXENSG00000137710.104002.696901921.880001.0584057.8487055.96090HepG2ACO1
RDXENSG00000137710.102205.624401660.912900.409102.319801.36190HepG2AKAP8
RDXENSG00000137710.102395.144903005.16850-0.327303.244702.51070HepG2AUH
RDXENSG00000137710.101300.687201904.58360-0.550204.124502.98390HepG2BCCIP
RDXENSG00000137710.101994.063504206.32370-1.076803.446702.78700HepG2BOP1
RDXENSG00000137710.103344.887602353.196600.507204.301403.36470HepG2CALR
RDXENSG00000137710.102490.946403640.60650-0.547503.510002.39940HepG2CCAR1
RDXENSG00000137710.102520.237701712.030900.557806.188805.05990HepG2CIRBP
RDXENSG00000137710.102498.618301684.734800.568503.546402.67410HepG2CNOT7
RDXENSG00000137710.101307.279901604.11550-0.295203.158502.07100HepG2YBX3
RDXENSG00000137710.102787.720202380.739100.227602.611601.98510HepG2CELF1
RDXENSG00000137710.101946.266702559.92900-0.395408.874807.66420HepG2DAZAP1
RDXENSG00000137710.101235.376201777.59360-0.525007.836006.55240HepG2DDX19B
RDXENSG00000137710.10850.947801565.12230-0.879106.690505.68480HepG2DDX21
RDXENSG00000137710.101527.758401838.79150-0.267302.479301.83240HepG2DKC1
RDXENSG00000137710.101250.823401575.18620-0.332602.602601.91600HepG2DNAJC21
RDXENSG00000137710.101105.971501561.18230-0.4973010.627609.44670HepG2DNAJC2
RDXENSG00000137710.102600.569001722.799300.594006.464805.57950HepG2EIF2S1
RDXENSG00000137710.101728.441101356.909300.349002.684601.79380HepG2EIF3D
RDXENSG00000137710.10761.402701903.87620-1.3222022.2918020.52090HepG2EIF4A3
RDXENSG00000137710.10981.166901853.72800-0.917909.280808.05940HepG2EIF4B
RDXENSG00000137710.103304.499302525.484100.387807.208805.97300HepG2EIF4G1
RDXENSG00000137710.102002.972902419.25990-0.272402.049301.34020HepG2EIF4G2
RDXENSG00000137710.102678.513503450.10810-0.365203.665302.98920HepG2ETF1
RDXENSG00000137710.103484.103302481.242400.489604.607403.63270HepG2FIP1L1
RDXENSG00000137710.101254.45030922.344200.443604.324003.35320HepG2FUBP3
RDXENSG00000137710.102665.357001920.990600.472404.408103.54920HepG2FXR1
RDXENSG00000137710.101027.746001781.96920-0.794009.459108.26560HepG2G3BP1
RDXENSG00000137710.101384.570304378.42440-1.661005.843104.93660HepG2GPKOW
RDXENSG00000137710.101061.700501559.47850-0.554703.585902.31590HepG2GRSF1
RDXENSG00000137710.101345.818101835.01670-0.447305.970804.59960HepG2HDGF
RDXENSG00000137710.101265.326201590.27590-0.329801.953101.39880HepG2HNRNPA1
RDXENSG00000137710.101274.861101768.85660-0.472505.061804.14550HepG2HNRNPC
RDXENSG00000137710.101833.012802972.31750-0.697406.966005.89560HepG2HNRNPF
RDXENSG00000137710.101698.139402331.91450-0.4576011.3943010.11090HepG2HNRNPL
RDXENSG00000137710.102561.579104178.34950-0.705901.969701.43040HepG2HNRNPLL
RDXENSG00000137710.102422.964701712.364500.500707.343905.90840HepG2HNRNPM
RDXENSG00000137710.101557.025402926.92910-0.9106010.336909.02290HepG2IGF2BP1
RDXENSG00000137710.102986.714201699.891900.813003.190202.13060HepG2IGF2BP3
RDXENSG00000137710.101432.219801794.89050-0.325605.669904.65240HepG2ILF2
RDXENSG00000137710.102634.471203842.18980-0.544403.801702.82530HepG2LARP4
RDXENSG00000137710.103438.224401932.407100.831203.517402.81400HepG2MATR3
RDXENSG00000137710.101047.868101420.18580-0.438602.369001.39250HepG2METAP2
RDXENSG00000137710.101504.257901977.91830-0.394902.878102.23310HepG2NCBP2
RDXENSG00000137710.10834.886901761.42920-1.0771017.0467015.30710HepG2PABPC4
RDXENSG00000137710.10929.756201739.33100-0.9036025.8954023.82440HepG2PARN
RDXENSG00000137710.101518.747101728.03620-0.186301.880101.36310HepG2PCBP1
RDXENSG00000137710.101230.549001567.25560-0.348904.132303.24810HepG2PPIL4
RDXENSG00000137710.102361.678901758.262800.425607.549806.73510HepG2PTBP1
RDXENSG00000137710.101703.067702423.12790-0.508706.695605.82150HepG2PUF60
RDXENSG00000137710.104268.439902570.372200.7316017.6792016.07640HepG2PUM2
RDXENSG00000137710.101268.266601957.60080-0.6262010.115509.06320HepG2PUS1
RDXENSG00000137710.104664.888001767.607501.3999016.1618014.59980HepG2RAVER1
RDXENSG00000137710.103231.146002606.585000.309803.449602.50040HepG2RBM15
RDXENSG00000137710.104039.759102883.699400.4862010.433109.57040HepG2RBM22
RDXENSG00000137710.102370.437201728.310900.455705.556304.63110HepG2RBM25
RDXENSG00000137710.102542.128001956.843000.377403.738403.12750HepG2NELFE
RDXENSG00000137710.102226.884901822.414800.289103.338002.66880HepG2RECQL
RDXENSG00000137710.101669.621501320.258000.338603.202302.54740HepG2RPS19
RDXENSG00000137710.101793.872201429.313800.327702.334201.60580HepG2RRP9
RDXENSG00000137710.10987.441301564.85100-0.6643016.1222014.76030HepG2SAFB2
RDXENSG00000137710.101566.693502348.74910-0.584204.456303.59010HepG2SF3A3
RDXENSG00000137710.102048.886704136.13300-1.013403.119902.37230HepG2SF3B1
RDXENSG00000137710.102290.083001830.719600.322904.529903.80170HepG2SF3B4
RDXENSG00000137710.101923.672802323.36830-0.272404.391703.53760HepG2SLBP
RDXENSG00000137710.105643.631403257.116200.7929037.2415035.95310HepG2SRFBP1
RDXENSG00000137710.104163.586301910.817301.1235060.6216059.05710HepG2SRSF1
RDXENSG00000137710.101995.412202920.04830-0.549304.868503.98580HepG2SRSF7
RDXENSG00000137710.102208.552602828.09450-0.356703.655003.08340HepG2SSB
RDXENSG00000137710.101126.023601657.90670-0.558104.189702.69190HepG2STAU1
RDXENSG00000137710.104294.929702720.910000.6584021.0403019.58040HepG2SUCLG1
RDXENSG00000137710.102780.437401864.184600.576705.913004.98140HepG2SUPV3L1
RDXENSG00000137710.102031.058604070.79480-1.003103.207502.43240HepG2TARDBP
RDXENSG00000137710.10894.948101722.66880-0.9448029.9629028.34850HepG2TRIM56
RDXENSG00000137710.10789.988701101.30330-0.479303.554302.69720HepG2UCHL5
RDXENSG00000137710.101719.615402082.98130-0.276603.761702.96710HepG2UPF1
RDXENSG00000137710.101117.641601707.30020-0.611303.647302.48220HepG2UPF2
RDXENSG00000137710.102632.556801737.732800.599204.370102.78230HepG2XRCC5
RDXENSG00000137710.103011.668601943.651000.631704.945303.55220HepG2XRCC6
RDXENSG00000137710.10899.672101835.08220-1.0284015.4904013.79960HepG2XRN2
RDXENSG00000137710.101327.455801711.57830-0.366706.190805.24890HepG2ZC3H8
RDXENSG00000137710.101325.488202290.88080-0.7894030.8374029.51720HepG2ZNF622
RDXENSG00000137710.102905.220103414.77160-0.233102.125201.42930K562CPSF6
RDXENSG00000137710.106609.867305320.692300.312904.610003.34050K562CELF1
RDXENSG00000137710.101975.947502329.85240-0.237702.782901.57180K562EIF2S1
RDXENSG00000137710.101548.207402215.97800-0.517306.274705.04750K562EIF4A3
RDXENSG00000137710.101040.288801995.64210-0.9399024.6430021.48690K562EIF4B
RDXENSG00000137710.102162.721901518.823400.509804.928103.35090K562FKBP4
RDXENSG00000137710.102194.611601706.030100.363204.008802.36150K562FUS
RDXENSG00000137710.103462.511702498.120700.470903.259502.48120K562G3BP2
RDXENSG00000137710.101961.943603260.23470-0.7327013.3973011.63320K562GPKOW
RDXENSG00000137710.102693.422003383.41760-0.329002.889102.11850K562GRSF1
RDXENSG00000137710.102803.746602343.368000.258702.290301.31870K562HNRNPA1
RDXENSG00000137710.103294.508202594.971700.344204.794903.61100K562HNRNPU
RDXENSG00000137710.104782.916603736.217600.356203.712002.73710K562KIF1C
RDXENSG00000137710.101260.071901722.89620-0.451303.514301.83520K562NUSAP1
RDXENSG00000137710.101931.938902641.97660-0.451603.728201.61980K562PABPC4
RDXENSG00000137710.103329.615502542.996100.388703.160102.27050K562PCBP3
RDXENSG00000137710.102446.091201950.519700.326503.678802.74810K562POLR2G
RDXENSG00000137710.102709.515903422.70510-0.337102.024601.32660K562PPIG
RDXENSG00000137710.102117.161001683.967000.330202.645001.91150K562PRPF8
RDXENSG00000137710.101021.074701569.11550-0.619907.504705.87090K562PSIP1
RDXENSG00000137710.102174.592502883.81870-0.407203.656402.90460K562PTBP1
RDXENSG00000137710.106240.801705022.006900.313404.516903.12700K562PUM1
RDXENSG00000137710.104357.059703491.543100.319402.829002.28100K562PUS1
RDXENSG00000137710.103457.890502383.775800.536502.921501.45830K562RAVER1
RDXENSG00000137710.104021.927803401.842900.241502.730202.14030K562RBM15
RDXENSG00000137710.102174.099702765.94520-0.347402.572801.76450K562RBM22
RDXENSG00000137710.102303.084401721.860700.419502.703901.39010K562RRP9
RDXENSG00000137710.101831.261702748.42150-0.5858012.7955011.14290K562SF3A3
RDXENSG00000137710.102097.753202598.81960-0.309002.677201.83730K562SF3B4
RDXENSG00000137710.102879.925004395.53720-0.610004.378802.14990K562SMN1
RDXENSG00000137710.101883.466502272.69110-0.271002.311001.36380K562SRSF4
RDXENSG00000137710.102361.806201956.484300.271502.571701.78190K562SYNCRIP
RDXENSG00000137710.101931.115402861.37960-0.567305.306104.30860K562TARDBP
RDXENSG00000137710.102286.629602760.04140-0.271501.994701.30680K562TIA1
RDXENSG00000137710.101178.269401603.13380-0.444204.168302.95740K562TRIM56
RDXENSG00000137710.102918.552502501.835800.222202.041401.35270K562U2AF2
RDXENSG00000137710.103033.491102627.910500.207002.849501.99050K562WDR43
RDXENSG00000137710.105364.753604202.559800.352104.138902.55370K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RDX is not available on ENCORE database.





4 RBPs can affect the splicing of RDX :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERDXENSG00000137710.10chr11-110126013110126131110124669110124834110128491110128638-0.066000.000530.00716excludedK562AQR
SERDXENSG00000137710.10chr11-110108216110108441110106823110106916110118427110118558-0.054000.000570.01079excludedK562PUS1
A3SSRDXENSG00000137710.10chr11-1101284911101286521101284911101286381101288301101290520.064000.000000.00000longerK562AQR
A3SSRDXENSG00000137710.10chr11-1101246701101248991101246701101248341101260131101261100.054000.000010.00008longerK562AQR
A3SSRDXENSG00000137710.10chr11-1101082161101084411101082161101083771101184271101185470.056000.000000.00000longerK562AQR
A3SSRDXENSG00000137710.10chr11-1101260301101261311101260301101261101101284911101286520.099000.000000.00000longerK562AQR
A3SSRDXENSG00000137710.10chr11-1101025971101027951101025971101027581101039611101042040.082000.000000.00000longerK562AQR
MXERDXENSG00000137710.10chr11-110134684110134959110135503110135599110128830110128914110143260110143344-0.108000.002360.055382includedK562SBDS
MXERDXENSG00000137710.10chr11-110134684110134959110135503110135599110128830110128914110143260110143344-0.158000.000000.000082includedK562PPIL4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RDX is not avaliable on ENCORE database.