PRPF40A

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PRPF40A	ENSG00000196504.16	101.30	97.14	99.22	ENCSR000AEF
HepG2	PRPF40A	ENSG00000196504.16	89.52	129.06	109.29	ENCSR985KAT
K562	PRPF40A	ENSG00000196504.16	119.13	164.82	141.97	ENCSR000AEO

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
PRPF40A	293T	shRNA			PRPF40A-BG293LV02-35,PRPF40A-BG293LV02-36	NT-BG293LV02-1,NT-BG293LV02-2	,	Revoked	ENCORE2
PRPF40A	293T	shRNA			PRPF40A-BG293LV06-107B,PRPF40A-BG293LV06-108B	NT-BG293LV06-1B,NT-BG293LV06-2B	,	Sequenced	ENCORE2

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PRPF40A is not avaliable on ENCORE database.

Proteins bound to RNA

PRPF40A RNA is bound by 47 proteins.

eCLIP assay for PRPF40A is not avaliable on ENCORE database.

47 proteins are bound to PRPF40A RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	153537757	153537789	-	3'-UTR,CDS,intron-Distal	4.83456	16.46248	HepG2	GRWD1
chr2	153512663	153512702	-	3'-UTR,intron-Distal	3.09181	7.75306	HepG2	BCLAF1
chr2	153533964	153533967	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.20549	9.64022	K562	ZNF800
chr2	153535865	153535925	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.24471	15.72760	K562	UCHL5
chr2	153547461	153547496	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.80168	4.89564	K562	GPKOW
chr2	153530126	153530168	-	3'-UTR,CDS,intron-Distal	3.43921	10.17838	K562	ZNF622
chr2	153549560	153549583	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.14599	6.07513	K562	ZNF622
chr2	153530130	153530151	-	3'-UTR,CDS,intron-Distal	3.81317	5.76104	HepG2	BCLAF1
chr2	153535867	153535918	-	3'-UTR,CDS,intron-Distal	3.70673	3.40928	HepG2	UCHL5
chr2	153533086	153533191	-	3'-UTR,CDS,intron-Distal	4.25396	9.54304	K562	RBM15
chr2	153549575	153549597	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.09723	12.85356	K562	EFTUD2
chr2	153533075	153533127	-	3'-UTR,CDS,intron-Distal	4.09006	15.37934	HepG2	BCLAF1
chr2	153533963	153533990	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.41591	5.26203	HepG2	FXR2
chr2	153529515	153529561	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.07075	3.90287	K562	LIN28B
chr2	153508284	153508394	-	3'-UTR,intron-Distal	3.90346	7.55138	K562	KHSRP
chr2	153537832	153537848	-	3'-UTR,CDS,intron-Distal	3.44537	3.46769	K562	YBX3
chr2	153508942	153509066	-	3'-UTR,intron-Distal	4.25357	9.27432	HepG2	QKI
chr2	153529491	153529513	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.08675	14.55928	K562	UCHL5
chr2	153537823	153537849	-	3'-UTR,CDS,intron-Distal	4.65376	9.14010	HepG2	BCLAF1
chr2	153508153	153508213	-	3'-UTR,intron-Distal	5.72466	4.91909	K562	FMR1
chr2	153529516	153529548	-	3'-UTR,CDS,intron-Distal	5.19886	19.54581	HepG2	BCLAF1
chr2	153535925	153535948	-	3'-UTR,CDS,intron-Distal	3.20300	7.34382	K562	UCHL5
chr2	153511915	153512009	-	3'-UTR,intron-Distal	4.64616	3.03253	HepG2	TIA1
chr2	153508996	153509049	-	3'-UTR,intron-Distal	5.06684	5.61339	K562	QKI
chr2	153533151	153533268	-	3'-UTR,CDS,intron-Distal	3.11465	11.84149	HepG2	PPIG
chr2	153511961	153511998	-	3'-UTR,intron-Distal	4.47733	11.74683	K562	TIA1
chr2	153512061	153512132	-	3'-UTR,intron-Distal	4.23742	13.91240	K562	ZC3H11A
chr2	153530111	153530126	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.32620	14.52978	K562	ZNF622
chr2	153533179	153533267	-	3'-UTR,CDS,intron-Distal	3.23054	21.58346	HepG2	BCLAF1
chr2	153537758	153537783	-	3'-UTR,CDS,intron-Distal	4.94654	11.96613	K562	YBX3
chr2	153549552	153549574	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.15001	9.50920	K562	UCHL5
chr2	153535931	153535953	-	3'-UTR,CDS,intron-Distal	4.89914	12.32064	K562	ZNF622
chr2	153511903	153511961	-	3'-UTR,intron-Distal	4.68262	13.19814	K562	TIA1
chr2	153511157	153511199	-	3'-UTR,intron-Distal	4.44783	4.44205	K562	PUM2
chr2	153549517	153549601	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.40110	20.57523	K562	SF3B4
chr2	153547452	153547494	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.52083	7.26133	HepG2	PRPF8
chr2	153535927	153535985	-	3'-UTR,CDS,intron-Distal	3.06692	4.54185	K562	DDX24
chr2	153533187	153533294	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.34391	22.60665	K562	ZNF800
chr2	153533060	153533139	-	3'-UTR,CDS,intron-Distal	3.61350	4.46307	HepG2	EIF3D
chr2	153549522	153549592	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.26160	7.47024	HepG2	AQR
chr2	153537783	153537807	-	3'-UTR,CDS,intron-Distal	6.56757	24.28989	K562	YBX3
chr2	153533164	153533294	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.17314	25.58243	K562	PUM1
chr2	153528990	153529139	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.49716	9.76978	HepG2	FXR2
chr2	153529051	153529137	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.39894	6.18987	HepG2	GRWD1
chr2	153533058	153533142	-	3'-UTR,CDS,intron-Distal	3.80886	12.47018	HepG2	GRWD1
chr2	153512555	153512625	-	3'-UTR,intron-Distal	3.35068	4.29472	K562	IGF2BP1
chr2	153511919	153512003	-	3'-UTR,intron-Distal	4.37472	4.24308	HepG2	TIAL1
chr2	153511930	153511960	-	3'-UTR,intron-Distal	3.39386	14.83827	HepG2	ZC3H11A
chr2	153530168	153530218	-	3'-UTR,CDS,intron-Distal	3.71992	13.33439	K562	ZNF622
chr2	153535869	153535926	-	3'-UTR,CDS,intron-Distal	3.75024	10.87852	HepG2	GRWD1
chr2	153535570	153535589	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.18784	7.61291	HepG2	BCLAF1
chr2	153529504	153529567	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.04910	9.51041	HepG2	BUD13
chr2	153535953	153535986	-	3'-UTR,CDS,intron-Distal	3.88179	12.25709	K562	ZNF622
chr2	153512307	153512359	-	3'-UTR,intron-Distal	3.18003	5.05178	HepG2	SUB1
chr2	153529551	153529556	-	3'-UTR,CDS,intron-Distal	3.84074	14.90668	K562	UCHL5
chr2	153529103	153529137	-	3'-UTR,CDS,intron-Distal	3.73980	9.36208	K562	UCHL5
chr2	153533967	153533983	-	3'-UTR,CDS,intron-Distal	3.36488	14.24377	K562	ZNF800
chr2	153511892	153511930	-	3'-UTR,intron-Distal	3.77298	15.02751	HepG2	ZC3H11A
chr2	153537738	153537757	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.81857	8.94272	HepG2	GRWD1
chr2	153547451	153547499	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.54100	6.03804	K562	U2AF2
chr2	153508153	153508230	-	3'-UTR,intron-Distal	3.90787	8.23834	HepG2	CSTF2
chr2	153535866	153535919	-	3'-UTR,CDS,intron-Distal	3.64660	13.90271	HepG2	BCLAF1
chr2	153529491	153529516	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.61798	19.97376	HepG2	BCLAF1
chr2	153533072	153533129	-	3'-UTR,CDS,intron-Distal	4.06338	7.02849	HepG2	HLTF
chr2	153535589	153535623	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.31472	9.30684	HepG2	BCLAF1
chr2	153529491	153529556	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.38613	6.58928	HepG2	FXR2
chr2	153535948	153535984	-	3'-UTR,CDS,intron-Distal	3.70710	13.05803	K562	UCHL5
chr2	153511220	153511287	-	3'-UTR,intron-Distal	3.32917	5.47292	K562	FAM120A
chr2	153535955	153535995	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.70873	6.23149	HepG2	AQR
chr2	153530111	153530127	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.15703	13.09897	K562	UCHL5
chr2	153529491	153529496	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.08708	4.07132	HepG2	GRWD1
chr2	153533075	153533132	-	3'-UTR,CDS,intron-Distal	4.60260	5.89812	K562	GRWD1
chr2	153549504	153549585	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.17507	12.84241	HepG2	PRPF8
chr2	153533221	153533304	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.19477	15.55438	HepG2	AQR
chr2	153512778	153512912	-	3'-UTR,CDS,intron-Distal	3.26226	6.64397	HepG2	FXR2
chr2	153537789	153537849	-	3'-UTR,CDS,intron-Distal	4.27467	20.79805	HepG2	GRWD1
chr2	153529513	153529551	-	3'-UTR,CDS,intron-Distal	4.04251	22.34658	K562	UCHL5
chr2	153532967	153533008	-	3'-UTR,CDS,intron-Distal	3.78045	5.97027	HepG2	GRWD1
chr2	153530109	153530155	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.27115	4.04703	HepG2	FXR2
chr2	153530165	153530217	-	3'-UTR,CDS,intron-Distal	3.29028	11.45886	K562	UCHL5
chr2	153535927	153535983	-	3'-UTR,CDS,intron-Distal	3.10184	12.19427	HepG2	BCLAF1
chr2	153549540	153549575	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.37818	19.68846	K562	EFTUD2
chr2	153511896	153511930	-	3'-UTR,intron-Distal	3.85104	14.08007	K562	ZC3H11A
chr2	153528972	153529138	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.92511	6.68607	K562	TRA2A
chr2	153537807	153537832	-	3'-UTR,CDS,intron-Distal	5.82880	15.54737	K562	YBX3
chr2	153512756	153512779	-	3'-UTR,intron-Distal	3.69153	6.97808	HepG2	BCLAF1
chr2	153529515	153529556	-	3'-UTR,CDS,intron-Distal	3.56059	20.80821	K562	ZNF622
chr2	153530133	153530165	-	3'-UTR,CDS,intron-Distal	3.19058	8.23345	K562	UCHL5
chr2	153547461	153547499	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.04993	4.63605	HepG2	U2AF2
chr2	153530111	153530120	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.13001	3.53509	HepG2	HLTF
chr2	153533073	153533122	-	3'-UTR,CDS,intron-Distal	3.22855	11.75385	K562	UCHL5
chr2	153535852	153535868	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.58592	10.89589	K562	AQR
chr2	153529112	153529137	-	3'-UTR,CDS,intron-Distal	5.16709	14.17165	HepG2	BCLAF1
chr2	153530112	153530125	-	3'-UTR,CDS,intron-Distal	4.66911	10.89658	HepG2	BCLAF1
chr2	153512816	153512910	-	3'-UTR,CDS,intron-Distal	3.44612	10.60281	HepG2	GRWD1
chr2	153529548	153529556	-	3'-UTR,CDS,intron-Distal	4.63443	11.22295	HepG2	BCLAF1
chr2	153533129	153533185	-	3'-UTR,CDS,intron-Distal	3.53283	5.11909	HepG2	HLTF
chr2	153547452	153547497	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.06988	9.14335	K562	EFTUD2
chr2	153530157	153530213	-	3'-UTR,CDS,intron-Distal	3.08515	7.29555	HepG2	BCLAF1
chr2	153529036	153529108	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.45443	19.09577	HepG2	BCLAF1
chr2	153528971	153529102	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.29505	8.14854	HepG2	TRA2A
chr2	153533066	153533139	-	3'-UTR,CDS,intron-Distal	4.04227	20.57324	K562	ZNF622
chr2	153532980	153533013	-	3'-UTR,CDS,intron-Distal	3.24361	4.94039	K562	YBX3
chr2	153535864	153535918	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.01444	12.21265	K562	ZNF622
chr2	153529016	153529138	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.40977	6.73037	K562	CPSF6
chr2	153533143	153533179	-	3'-UTR,CDS,intron-Distal	3.58114	7.42278	HepG2	BCLAF1
chr2	153533977	153533989	-	3'-UTR,CDS,intron-Distal	3.02990	9.30713	K562	UCHL5
chr2	153512808	153512910	-	3'-UTR,CDS,intron-Distal	4.06322	39.44960	K562	UCHL5
chr2	153533151	153533247	-	3'-UTR,CDS,intron-Distal	4.51052	26.99157	HepG2	GRWD1
chr2	153533964	153533969	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.03719	8.62157	K562	UCHL5
chr2	153529039	153529100	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.32038	27.27185	K562	UCHL5
chr2	153533166	153533255	-	3'-UTR,CDS,intron-Distal	3.07913	19.36655	K562	UCHL5
chr2	153532968	153533011	-	3'-UTR,CDS,intron-Distal	3.06472	10.06934	K562	ZNF622
chr2	153535569	153535591	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.20054	6.81934	HepG2	GRWD1
chr2	153512815	153512911	-	3'-UTR,CDS,intron-Distal	3.11844	15.40130	K562	GRWD1
chr2	153512746	153512800	-	3'-UTR,intron-Distal	4.18917	6.50481	K562	FMR1
chr2	153533964	153533975	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.34856	8.77086	HepG2	BCLAF1
chr2	153535829	153535887	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.38605	9.10443	HepG2	PRPF8
chr2	153535596	153535641	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.51947	5.93043	HepG2	AQR
chr2	153537741	153537823	-	3'-UTR,CDS,intron-Distal	3.66445	19.83872	HepG2	BCLAF1
chr2	153512814	153512910	-	3'-UTR,CDS,intron-Distal	4.41847	31.58645	HepG2	BCLAF1
chr2	153512382	153512439	-	3'-UTR,intron-Distal	3.67944	8.21873	HepG2	ZC3H11A
chr2	153573878	153573949	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.04173	10.40699	HepG2	GRWD1
chr2	153573905	153573953	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.49932	17.40244	K562	FXR2
chr2	153574002	153574053	-	5'-UTR,intron-Distal,intron-Proximal	3.25272	4.11795	K562	YBX3
chr2	153573898	153573957	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.08269	3.44907	HepG2	LIN28B
chr2	153573875	153573967	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.20919	21.18280	K562	LIN28B
chr2	153573868	153573934	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.47353	16.28857	K562	UCHL5
chr2	153573864	153573943	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.85496	13.65290	HepG2	PPIG
chr2	153574408	153574489	-	5'-UTR,intron-Distal,intron-Proximal	4.98989	4.57427	HepG2	PCBP2
chr2	153573896	153573956	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.10607	5.85620	K562	DDX3X
chr2	153573817	153573941	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.27006	15.99287	HepG2	SRSF1
chr2	153573902	153573958	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.49969	9.89870	K562	FMR1
chr2	153515845	153515873	-	CDS,intron-Distal,intron-Proximal	4.06199	6.24305	HepG2	AQR
chr2	153515783	153515815	-	CDS,intron-Distal,intron-Proximal	4.35250	9.09836	HepG2	BCLAF1
chr2	153515461	153515492	-	CDS,intron-Distal,intron-Proximal	3.79021	10.62851	K562	UCHL5
chr2	153573864	153573905	-	CDS,intron-Distal,intron-Proximal	3.56851	11.89884	K562	FXR2
chr2	153515593	153515658	-	CDS,intron-Distal,intron-Proximal	3.19550	6.47139	HepG2	PPIG
chr2	153520672	153520759	-	CDS,intron-Distal	3.94838	34.55262	K562	UCHL5
chr2	153512824	153512910	-	CDS,intron-Distal	3.34905	26.07167	K562	ZNF622
chr2	153526752	153526849	-	CDS,intron-Distal	3.11200	3.40171	HepG2	UCHL5
chr2	153520461	153520482	-	CDS,intron-Distal,intron-Proximal	4.89917	12.14572	HepG2	BCLAF1
chr2	153525649	153525703	-	CDS,intron-Distal,intron-Proximal	5.31589	20.55953	HepG2	BCLAF1
chr2	153520654	153520762	-	CDS,intron-Distal	4.20069	4.79286	HepG2	PRPF4
chr2	153572507	153572550	-	CDS,intron-Distal,intron-Proximal	3.64938	10.01317	K562	FXR2
chr2	153527786	153527801	-	CDS,intron-Distal,intron-Proximal	3.04537	4.68592	HepG2	PPIG
chr2	153519116	153519137	-	CDS,intron-Distal,intron-Proximal	3.76294	11.70058	K562	ZNF622
chr2	153515606	153515619	-	CDS,intron-Distal,intron-Proximal	5.61184	11.17302	HepG2	BCLAF1
chr2	153572508	153572583	-	CDS,intron-Distal,intron-Proximal	4.15722	15.00823	HepG2	GRWD1
chr2	153519553	153519598	-	CDS,intron-Distal,intron-Proximal	3.38395	11.47503	HepG2	BCLAF1
chr2	153551055	153551116	-	CDS,intron-Distal,intron-Proximal	3.27676	16.05932	K562	UCHL5
chr2	153514471	153514534	-	CDS,intron-Distal	3.74056	6.10522	K562	GPKOW
chr2	153573775	153573856	-	CDS,intron-Distal,intron-Proximal	3.63941	12.00294	HepG2	BUD13
chr2	153573812	153573897	-	CDS,intron-Distal,intron-Proximal	4.28028	15.19376	HepG2	PRPF8
chr2	153572626	153572641	-	CDS,intron-Distal,intron-Proximal	3.49766	8.50585	HepG2	GRWD1
chr2	153525762	153525784	-	CDS,intron-Distal	4.11604	3.75533	K562	TRA2A
chr2	153526813	153526890	-	CDS,intron-Distal	3.22742	4.33822	HepG2	FXR2
chr2	153520652	153520668	-	CDS,intron-Distal	3.74754	9.75908	K562	ZNF622
chr2	153528971	153529036	-	CDS,intron-Distal,intron-Proximal	5.84128	26.52719	HepG2	BCLAF1
chr2	153519120	153519141	-	CDS,intron-Distal	4.91247	6.26332	HepG2	GRWD1
chr2	153515619	153515676	-	CDS,intron-Distal,intron-Proximal	4.59350	19.10180	HepG2	BCLAF1
chr2	153519140	153519212	-	CDS,intron-Distal	4.14737	22.25911	K562	UCHL5
chr2	153527798	153527887	-	CDS,intron-Distal	4.28892	4.66041	HepG2	UCHL5
chr2	153526770	153526876	-	CDS,intron-Distal	3.22844	8.77343	K562	YBX3
chr2	153572550	153572592	-	CDS,intron-Distal	5.01786	6.78045	K562	FXR2
chr2	153551051	153551140	-	CDS,intron-Distal,intron-Proximal	3.37978	4.79107	K562	SRSF1
chr2	153527794	153527895	-	CDS,intron-Distal	5.32844	14.37917	HepG2	ZNF800
chr2	153520702	153520766	-	CDS,intron-Distal	3.26681	7.69514	K562	GRWD1
chr2	153573861	153573891	-	CDS,intron-Distal,intron-Proximal	3.46975	11.51524	HepG2	NCBP2
chr2	153525703	153525764	-	CDS,intron-Distal	4.09941	15.82151	HepG2	BCLAF1
chr2	153525652	153525789	-	CDS,intron-Distal,intron-Proximal	4.22780	9.32645	HepG2	TRA2A
chr2	153514440	153514481	-	CDS,intron-Distal,intron-Proximal	4.07427	9.70241	K562	ZNF622
chr2	153519116	153519140	-	CDS,intron-Distal,intron-Proximal	4.24569	18.56668	K562	UCHL5
chr2	153527790	153527894	-	CDS,intron-Distal	5.30663	33.52520	HepG2	BCLAF1
chr2	153551112	153551137	-	CDS,intron-Distal,intron-Proximal	3.15342	5.95144	K562	FXR2
chr2	153572507	153572556	-	CDS,intron-Distal,intron-Proximal	3.75414	15.90087	K562	UCHL5
chr2	153515844	153515861	-	CDS,intron-Distal	3.90405	11.09639	K562	ZNF622
chr2	153520466	153520483	-	CDS,intron-Distal,intron-Proximal	4.76597	6.03821	HepG2	GRWD1
chr2	153525704	153525764	-	CDS,intron-Distal	3.80178	11.31198	HepG2	GRWD1
chr2	153528972	153529030	-	CDS,intron-Distal,intron-Proximal	3.11031	24.28465	K562	PUM1
chr2	153551048	153551093	-	CDS,intron-Distal,intron-Proximal	3.16566	10.22067	K562	BUD13
chr2	153528972	153529016	-	CDS,intron-Distal,intron-Proximal	4.23100	3.56104	K562	CPSF6
chr2	153514402	153514453	-	CDS,intron-Distal,intron-Proximal	4.24612	14.92872	HepG2	BCLAF1
chr2	153551003	153551062	-	CDS,intron-Distal,intron-Proximal	5.03584	15.18812	K562	AQR
chr2	153528971	153529009	-	CDS,intron-Distal,intron-Proximal	3.59022	4.07060	HepG2	ZNF800
chr2	153525703	153525762	-	CDS,intron-Distal	5.78666	12.32054	K562	TRA2A
chr2	153528993	153529039	-	CDS,intron-Distal,intron-Proximal	4.36308	23.49461	K562	UCHL5
chr2	153527824	153527896	-	CDS,intron-Distal,intron-Proximal	4.63753	5.24211	K562	CPSF6
chr2	153520468	153520482	-	CDS,intron-Distal,intron-Proximal	4.31086	3.86413	K562	AGGF1
chr2	153514405	153514417	-	CDS,intron-Distal,intron-Proximal	3.19768	5.51984	K562	UCHL5
chr2	153519145	153519181	-	CDS,intron-Distal	4.00621	11.64153	HepG2	BCLAF1
chr2	153520679	153520760	-	CDS,intron-Distal	4.55180	31.36801	HepG2	BCLAF1
chr2	153515840	153515864	-	CDS,intron-Distal	3.63487	5.91846	K562	GRWD1
chr2	153528972	153529010	-	CDS,intron-Distal,intron-Proximal	3.48439	16.22459	K562	ZNF622
chr2	153572570	153572650	-	CDS,intron-Distal,intron-Proximal	3.19473	16.63104	HepG2	BUD13
chr2	153526757	153526856	-	CDS,intron-Distal	4.27970	30.55628	K562	ZNF622
chr2	153527793	153527894	-	CDS,intron-Distal	3.07054	28.12312	K562	UCHL5
chr2	153572582	153572640	-	CDS,intron-Distal	3.96340	18.88616	K562	ZNF622
chr2	153526748	153526851	-	CDS,intron-Distal	4.16715	15.03261	HepG2	GRWD1
chr2	153572584	153572645	-	CDS,intron-Distal,intron-Proximal	3.06087	8.72081	K562	BUD13
chr2	153512846	153512911	-	CDS,intron-Distal	3.09643	7.63566	K562	ZNF800
chr2	153525650	153525685	-	CDS,intron-Distal,intron-Proximal	4.12333	25.51265	K562	UCHL5
chr2	153572598	153572640	-	CDS,intron-Distal	3.44205	14.06664	K562	UCHL5
chr2	153519548	153519630	-	CDS,intron-Distal,intron-Proximal	4.36205	26.25812	K562	UCHL5
chr2	153572554	153572613	-	CDS,intron-Distal	5.82641	13.08996	K562	FMR1
chr2	153572583	153572626	-	CDS,intron-Distal	3.71002	10.21811	HepG2	GRWD1
chr2	153526858	153526891	-	CDS,intron-Distal	3.92259	11.21209	HepG2	BCLAF1
chr2	153572508	153572583	-	CDS,intron-Distal,intron-Proximal	4.52626	6.81772	HepG2	UCHL5
chr2	153515837	153515871	-	CDS,intron-Distal,intron-Proximal	3.42627	4.45081	HepG2	ZNF800
chr2	153520650	153520677	-	CDS,intron-Distal,intron-Proximal	3.07247	5.51079	K562	BUD13
chr2	153520651	153520672	-	CDS,intron-Distal,intron-Proximal	3.36024	3.84532	K562	XRCC6
chr2	153520180	153520251	-	CDS,intron-Distal	3.53835	4.17990	K562	CPSF6
chr2	153519116	153519145	-	CDS,intron-Distal,intron-Proximal	6.94624	28.02984	HepG2	BCLAF1
chr2	153525708	153525762	-	CDS,intron-Distal	3.03551	19.74220	K562	UCHL5
chr2	153515505	153515578	-	CDS,intron-Distal,intron-Proximal	3.28065	11.50180	K562	SF3B4
chr2	153515839	153515863	-	CDS,intron-Distal	3.50770	15.62797	K562	UCHL5
chr2	153520461	153520483	-	CDS,intron-Distal,intron-Proximal	3.11022	5.89932	K562	ZNF622
chr2	153519116	153519143	-	CDS,intron-Distal,intron-Proximal	3.08224	4.30842	HepG2	ZNF800
chr2	153520699	153520763	-	CDS,intron-Distal	3.33926	13.28681	K562	PUM1
chr2	153551046	153551112	-	CDS,intron-Distal,intron-Proximal	3.84585	12.46287	HepG2	GRWD1
chr2	153572587	153572641	-	CDS,intron-Distal,intron-Proximal	3.37572	14.60432	K562	DDX3X
chr2	153520465	153520482	-	CDS,intron-Distal,intron-Proximal	3.42850	4.70460	K562	DDX24
chr2	153520703	153520750	-	CDS,intron-Distal	4.45950	13.61774	K562	YBX3
chr2	153572506	153572554	-	CDS,intron-Distal,intron-Proximal	3.51177	11.36760	K562	FMR1
chr2	153526856	153526893	-	CDS,intron-Distal	4.40962	11.04905	K562	ZNF622
chr2	153515461	153515501	-	CDS,intron-Distal,intron-Proximal	3.76832	9.72545	K562	ZNF622
chr2	153527842	153527895	-	CDS,intron-Distal	4.01639	3.75533	K562	TRA2A
chr2	153519115	153519137	-	CDS,intron-Distal,intron-Proximal	3.74349	6.39924	K562	GRWD1
chr2	153520704	153520765	-	CDS,intron-Distal	4.41926	30.30646	K562	ZNF622
chr2	153526743	153526774	-	CDS,intron-Distal,intron-Proximal	3.34609	9.67260	HepG2	BCLAF1
chr2	153519116	153519120	-	CDS,intron-Distal,intron-Proximal	4.63196	5.35719	HepG2	GRWD1
chr2	153525764	153525794	-	CDS,intron-Distal,intron-Proximal	3.03254	5.60215	HepG2	AQR
chr2	153520674	153520765	-	CDS,intron-Distal	3.85284	11.02453	HepG2	GRWD1
chr2	153520654	153520763	-	CDS,intron-Distal	3.21564	9.31922	HepG2	ZNF800
chr2	153526744	153526768	-	CDS,intron-Distal,intron-Proximal	3.43542	10.10403	K562	UCHL5
chr2	153515505	153515600	-	CDS,intron-Distal,intron-Proximal	4.51189	19.91098	HepG2	EFTUD2
chr2	153515864	153515870	-	CDS,intron-Distal	3.28722	4.37145	K562	GRWD1
chr2	153515490	153515511	-	CDS,intron-Distal,intron-Proximal	4.03378	10.67609	HepG2	BCLAF1
chr2	153525688	153525704	-	CDS,intron-Distal	4.32078	9.05280	HepG2	GRWD1
chr2	153525653	153525762	-	CDS,intron-Distal	3.51140	5.48824	HepG2	FXR2
chr2	153515676	153515701	-	CDS,intron-Distal,intron-Proximal	4.52688	10.57092	HepG2	BCLAF1
chr2	153520694	153520703	-	CDS,intron-Distal	4.95572	14.48255	K562	YBX3
chr2	153519149	153519211	-	CDS,intron-Distal	4.38793	9.05280	HepG2	GRWD1
chr2	153515840	153515870	-	CDS,intron-Distal	5.74259	21.59876	HepG2	BCLAF1
chr2	153551022	153551087	-	CDS,intron-Distal,intron-Proximal	7.20271	30.58090	HepG2	PRPF8
chr2	153520677	153520695	-	CDS,intron-Distal	3.54745	9.69701	K562	BUD13
chr2	153519116	153519131	-	CDS,intron-Distal,intron-Proximal	3.02931	5.63601	K562	ZNF800
chr2	153520651	153520674	-	CDS,intron-Distal,intron-Proximal	3.51833	6.39282	HepG2	GRWD1
chr2	153520652	153520678	-	CDS,intron-Distal	3.14408	3.04831	K562	RBM15
chr2	153515865	153515870	-	CDS,intron-Distal	3.69653	8.94096	K562	ZNF622
chr2	153572592	153572641	-	CDS,intron-Distal,intron-Proximal	4.18492	10.68031	K562	FXR2
chr2	153520171	153520277	-	CDS,intron-Distal	4.24328	10.69434	HepG2	GRWD1
chr2	153515784	153515815	-	CDS,intron-Distal,intron-Proximal	3.92706	6.39499	HepG2	GRWD1
chr2	153526774	153526856	-	CDS,intron-Distal	4.43956	25.10440	HepG2	BCLAF1
chr2	153528887	153528988	-	CDS,intron-Distal,intron-Proximal	3.28651	19.61822	K562	AQR
chr2	153519116	153519133	-	CDS,intron-Distal,intron-Proximal	3.59405	3.67894	HepG2	AQR
chr2	153551116	153551136	-	CDS,intron-Distal	3.19574	11.49943	K562	UCHL5
chr2	153520650	153520679	-	CDS,intron-Distal,intron-Proximal	4.24336	15.30407	HepG2	BCLAF1
chr2	153572579	153572641	-	CDS,intron-Distal,intron-Proximal	3.48313	7.87154	HepG2	PPIG
chr2	153551112	153551136	-	CDS,intron-Distal	4.38556	11.08250	HepG2	GRWD1
chr2	153515437	153515482	-	CDS,intron-Distal,intron-Proximal	4.13194	24.21754	K562	EFTUD2
chr2	153551040	153551106	-	CDS,intron-Distal,intron-Proximal	3.56498	11.39812	HepG2	PPIG
chr2	153520759	153520766	-	CDS,intron-Distal	4.03930	10.22171	K562	UCHL5
chr2	153515609	153515678	-	CDS,intron-Distal,intron-Proximal	3.03930	14.95896	K562	UCHL5
chr2	153519549	153519607	-	CDS,intron-Distal,intron-Proximal	3.82493	4.31749	K562	TRA2A
chr2	153525649	153525703	-	CDS,intron-Distal,intron-Proximal	3.87883	10.07343	K562	TRA2A
chr2	153526783	153526851	-	CDS,intron-Distal	4.29538	5.05732	HepG2	ZNF800
chr2	153525628	153525758	-	CDS,intron-Distal,intron-Proximal	4.19594	16.78076	HepG2	PRPF8
chr2	153525685	153525708	-	CDS,intron-Distal	4.33307	25.84872	K562	UCHL5
chr2	153527802	153527897	-	CDS,intron-Distal,intron-Proximal	4.25979	28.03000	K562	ZNF622
chr2	153519639	153519684	-	CDS,intron-Distal,intron-Proximal	3.79567	11.46750	HepG2	BCLAF1
chr2	153520170	153520245	-	CDS,intron-Distal	3.40799	14.59078	HepG2	BCLAF1
chr2	153551053	153551122	-	CDS,intron-Distal,intron-Proximal	4.59646	7.79751	HepG2	UCHL5
chr2	153573783	153573825	-	CDS,intron-Distal,intron-Proximal	4.04539	3.12843	K562	PRPF8
chr2	153515863	153515870	-	CDS,intron-Distal	3.99958	15.19385	K562	UCHL5
chr2	153526743	153526777	-	CDS,intron-Distal,intron-Proximal	3.03979	4.04485	K562	RBM15
chr2	153525650	153525688	-	CDS,intron-Distal,intron-Proximal	4.16528	6.84754	HepG2	GRWD1
chr2	153515355	153515482	-	CDS,intron-Distal,intron-Proximal	4.52485	24.20336	HepG2	EFTUD2
chr2	153529033	153529060	-	CDS,intron-Distal,intron-Proximal	3.54285	20.82510	K562	PUM1
chr2	153525650	153525708	-	CDS,intron-Distal,intron-Proximal	4.29961	35.98034	K562	ZNF622
chr2	153573867	153573896	-	CDS,intron-Distal,intron-Proximal	3.53026	11.42661	K562	DDX3X
chr2	153520397	153520440	-	CDS,intron-Distal,intron-Proximal	3.71371	6.18214	HepG2	GRWD1
chr2	153520257	153520281	-	CDS,intron-Distal	3.87282	6.97808	HepG2	BCLAF1
chr2	153520668	153520704	-	CDS,intron-Distal	5.17562	20.17003	K562	ZNF622
chr2	153526768	153526860	-	CDS,intron-Distal	3.93567	29.05487	K562	UCHL5
chr2	153519548	153519616	-	CDS,intron-Distal,intron-Proximal	3.08615	17.06447	K562	ZNF800
chr2	153515482	153515583	-	CDS,intron-Distal,intron-Proximal	4.85957	65.38416	K562	EFTUD2
chr2	153551018	153551095	-	CDS,intron-Distal,intron-Proximal	3.59708	11.30360	K562	PRPF8
chr2	153515511	153515524	-	CDS,intron-Distal,intron-Proximal	5.93105	13.49216	HepG2	BCLAF1
chr2	153568191	153568247	-	intron-Distal	4.29564	8.26679	K562	CPSF6
chr2	153513498	153513552	-	intron-Distal	5.15842	8.61853	HepG2	TIAL1
chr2	153528873	153528920	-	intron-Distal,intron-Proximal	3.59793	6.00776	K562	PRPF8
chr2	153535506	153535526	-	intron-Distal,intron-Proximal	5.74450	11.15144	HepG2	QKI
chr2	153546261	153546338	-	intron-Distal	4.01069	4.64522	K562	HNRNPC
chr2	153543658	153543790	-	intron-Distal	3.31346	7.22304	K562	KHSRP
chr2	153520542	153520636	-	intron-Distal,intron-Proximal	5.13463	9.71683	K562	KHSRP
chr2	153550973	153551038	-	intron-Distal,intron-Proximal	3.64893	5.04794	HepG2	KHSRP
chr2	153525531	153525598	-	intron-Distal,intron-Proximal	3.39766	5.58816	K562	PRPF8
chr2	153533300	153533343	-	intron-Distal,intron-Proximal	5.63931	9.62108	K562	SF3B4
chr2	153550011	153550046	-	intron-Distal,intron-Proximal	4.82728	4.50924	HepG2	SF3B4
chr2	153550936	153550997	-	intron-Distal,intron-Proximal	4.01817	7.05055	K562	PRPF8
chr2	153568247	153568306	-	intron-Distal	3.87164	10.41820	K562	CPSF6
chr2	153549506	153549544	-	intron-Distal,intron-Proximal	3.22346	3.20886	K562	PRPF8
chr2	153533814	153533843	-	intron-Distal	4.01595	3.02181	K562	PRPF8
chr2	153535451	153535550	-	intron-Distal,intron-Proximal	5.70335	28.73560	K562	QKI
chr2	153550250	153550289	-	intron-Distal	3.48072	4.31768	HepG2	KHSRP
chr2	153572368	153572465	-	intron-Distal,intron-Proximal	4.09644	5.85201	K562	PRPF8
chr2	153520070	153520111	-	intron-Distal,intron-Proximal	3.85334	4.49024	K562	AQR
chr2	153573538	153573620	-	intron-Distal	3.09195	4.21588	K562	PRPF8
chr2	153523129	153523189	-	intron-Distal	4.29841	4.77718	HepG2	ILF3
chr2	153551950	153552018	-	intron-Distal	3.15342	4.10408	K562	KHSRP
chr2	153557468	153557535	-	intron-Distal	3.71116	3.15106	HepG2	HNRNPC
chr2	153563171	153563247	-	intron-Distal	4.55238	5.37406	HepG2	HNRNPM
chr2	153515381	153515437	-	intron-Distal,intron-Proximal	7.34597	22.72409	K562	EFTUD2
chr2	153537879	153537932	-	intron-Distal,intron-Proximal	3.53185	5.78005	K562	KHSRP
chr2	153520768	153520813	-	intron-Distal,intron-Proximal	4.38877	10.47661	K562	SF3B4
chr2	153550926	153550973	-	intron-Distal,intron-Proximal	4.58038	5.10338	HepG2	KHSRP
chr2	153513487	153513548	-	intron-Distal	4.11986	6.66403	K562	TIA1
chr2	153572326	153572401	-	intron-Distal	3.71057	4.76004	K562	KHSRP
chr2	153543686	153543903	-	intron-Distal	5.24767	7.87558	HepG2	HNRNPM
chr2	153550967	153551003	-	intron-Distal,intron-Proximal	4.72944	7.53589	K562	AQR
chr2	153550963	153551020	-	intron-Distal,intron-Proximal	4.92825	9.40065	K562	EFTUD2
chr2	153534388	153534465	-	intron-Distal	3.93131	5.57156	HepG2	QKI
chr2	153559774	153559864	-	intron-Distal	4.44301	3.65854	HepG2	RBFOX2
chr2	153550820	153550867	-	intron-Distal,intron-Proximal	3.96043	8.82110	K562	PRPF8
chr2	153549475	153549537	-	intron-Distal,intron-Proximal	5.42634	14.20167	K562	EFTUD2
chr2	153515132	153515204	-	intron-Distal	4.61431	6.48464	K562	TARDBP
chr2	153529443	153529480	-	intron-Distal,intron-Proximal	3.10331	4.83230	K562	AQR
chr2	153513490	153513555	-	intron-Distal	4.60623	4.43128	HepG2	TIA1
chr2	153533490	153533540	-	intron-Distal	3.06787	3.46531	K562	KHSRP
chr2	153515382	153515453	-	intron-Distal,intron-Proximal	3.68488	3.88924	K562	PRPF8
chr2	153570515	153570604	-	intron-Distal	3.53393	8.45941	HepG2	QKI
chr2	153537932	153537976	-	intron-Distal,intron-Proximal	4.57840	6.73684	K562	KHSRP
chr2	153558470	153558552	-	intron-Distal	3.17897	3.02891	HepG2	HNRNPL
chr2	153526688	153526744	-	intron-Distal,intron-Proximal	3.31788	4.38107	K562	AQR
chr2	153535794	153535852	-	intron-Distal,intron-Proximal	6.45984	18.62356	K562	AQR
chr2	153537976	153538084	-	intron-Distal	3.33562	8.86655	K562	KHSRP
chr2	153541747	153541857	-	intron-Distal	4.57769	3.34098	HepG2	HNRNPM
chr2	153534160	153534209	-	intron-Distal	3.06433	4.35941	K562	KHSRP
chr2	153535416	153535506	-	intron-Distal,intron-Proximal	7.23425	33.07507	HepG2	QKI
chr2	153550467	153550507	-	intron-Distal,intron-Proximal	4.22030	4.02395	HepG2	KHSRP
chr2	153551893	153551950	-	intron-Distal	3.45040	5.35459	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for PRPF40A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PRPF40A is not available on ENCORE database.
97 RBPs can affect the levels of PRPF40A.

The Knockdown/knockout RNA-Seq assay for PRPF40A is not available on ENCORE database.

97 RBPs can affect the gene expression of PRPF40A :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PRPF40A	ENSG00000196504.11	6502.23970	5206.92310	0.32040	2.18610	1.70720	HepG2	AKAP1
PRPF40A	ENSG00000196504.11	3034.34950	4253.67610	-0.48730	3.62520	2.55350	HepG2	BCCIP
PRPF40A	ENSG00000196504.11	8854.05830	7459.93490	0.24710	2.69620	1.93460	HepG2	CALR
PRPF40A	ENSG00000196504.11	7043.94980	10447.65510	-0.56870	2.27790	1.40200	HepG2	CCAR1
PRPF40A	ENSG00000196504.11	5461.77820	9409.06910	-0.78470	14.70450	13.27070	HepG2	CPSF6
PRPF40A	ENSG00000196504.11	4726.86500	5646.74330	-0.25650	3.95430	3.21090	HepG2	CELF1
PRPF40A	ENSG00000196504.11	4879.74730	6072.28050	-0.31540	8.91910	7.70680	HepG2	DAZAP1
PRPF40A	ENSG00000196504.11	3084.31360	4284.43920	-0.47420	4.03700	3.30260	HepG2	DDX6
PRPF40A	ENSG00000196504.11	3220.49460	3887.89300	-0.27170	2.36940	1.71270	HepG2	DNAJC21
PRPF40A	ENSG00000196504.11	2703.77920	3853.45210	-0.51120	17.39960	15.89510	HepG2	DNAJC2
PRPF40A	ENSG00000196504.11	3211.74140	4119.07480	-0.35900	2.93080	2.32080	HepG2	EIF2S1
PRPF40A	ENSG00000196504.11	3045.74550	4552.22600	-0.57980	5.75050	4.82980	HepG2	EIF4A3
PRPF40A	ENSG00000196504.11	4357.18560	5738.25300	-0.39720	4.45500	3.43710	HepG2	EIF4G2
PRPF40A	ENSG00000196504.11	3292.38210	2624.49270	0.32700	3.45330	2.57770	HepG2	FUBP3
PRPF40A	ENSG00000196504.11	5507.30970	4522.71090	0.28410	2.19350	1.40520	HepG2	G3BP2
PRPF40A	ENSG00000196504.11	7862.79820	10666.14060	-0.43990	4.15590	3.38320	HepG2	GPKOW
PRPF40A	ENSG00000196504.11	2296.26390	4365.95490	-0.92700	21.22730	19.50200	HepG2	HNRNPC
PRPF40A	ENSG00000196504.11	4319.48730	5907.60970	-0.45170	3.82690	2.99580	HepG2	HNRNPF
PRPF40A	ENSG00000196504.11	5689.98360	4313.51830	0.39950	4.35770	3.49790	HepG2	HNRNPK
PRPF40A	ENSG00000196504.11	4427.61190	5531.57850	-0.32120	9.23390	8.07180	HepG2	HNRNPL
PRPF40A	ENSG00000196504.11	7028.17110	10178.87380	-0.53440	6.89920	5.95590	HepG2	HNRNPLL
PRPF40A	ENSG00000196504.11	3202.05670	4337.09250	-0.43770	10.91730	9.77960	HepG2	HNRNPU
PRPF40A	ENSG00000196504.11	3975.71440	5817.39310	-0.54920	4.55750	3.64720	HepG2	IGF2BP1
PRPF40A	ENSG00000196504.11	4028.16250	4430.20260	-0.13730	2.00400	1.36820	HepG2	ILF2
PRPF40A	ENSG00000196504.11	6702.89570	4619.90300	0.53680	5.44340	4.58300	HepG2	MATR3
PRPF40A	ENSG00000196504.11	2907.20510	5625.36950	-0.95230	6.35710	5.17780	HepG2	MSI2
PRPF40A	ENSG00000196504.11	7379.86060	10380.63070	-0.49220	2.59730	1.66260	HepG2	MTPAP
PRPF40A	ENSG00000196504.11	4860.63480	4293.02450	0.17910	2.19180	1.42960	HepG2	PARN
PRPF40A	ENSG00000196504.11	4828.62410	4250.47430	0.18390	2.35030	1.78130	HepG2	PCBP1
PRPF40A	ENSG00000196504.11	6484.27220	4663.69600	0.47540	2.98710	1.90870	HepG2	PCBP2
PRPF40A	ENSG00000196504.11	3251.16890	3868.34630	-0.25080	3.08400	2.30930	HepG2	PPIL4
PRPF40A	ENSG00000196504.11	4816.83380	4324.97660	0.15530	1.88210	1.41390	HepG2	PTBP1
PRPF40A	ENSG00000196504.11	4925.83390	5747.60840	-0.22260	2.04600	1.52140	HepG2	PUF60
PRPF40A	ENSG00000196504.11	3364.77990	4386.31590	-0.38250	9.36200	8.34030	HepG2	PUS1
PRPF40A	ENSG00000196504.11	6529.64270	4501.27380	0.53660	3.03270	2.29720	HepG2	RAVER1
PRPF40A	ENSG00000196504.11	5549.15820	4251.12740	0.38430	4.97210	4.09210	HepG2	RBM25
PRPF40A	ENSG00000196504.11	2829.65010	3782.78240	-0.41880	2.97550	1.87490	HepG2	RCC2
PRPF40A	ENSG00000196504.11	5911.32270	4813.31690	0.29630	5.45580	4.73710	HepG2	NELFE
PRPF40A	ENSG00000196504.11	5373.56050	4482.89030	0.26130	4.40530	3.65070	HepG2	RECQL
PRPF40A	ENSG00000196504.11	3903.51900	3192.40080	0.29000	2.26770	1.54870	HepG2	RRP9
PRPF40A	ENSG00000196504.11	6248.47810	4502.93050	0.47250	13.19980	12.05740	HepG2	SF3B4
PRPF40A	ENSG00000196504.11	9963.23520	7121.53910	0.48430	17.98600	17.00460	HepG2	SRFBP1
PRPF40A	ENSG00000196504.11	7769.30120	4700.05530	0.72500	34.45860	33.19980	HepG2	SRSF1
PRPF40A	ENSG00000196504.11	4035.08720	5803.74100	-0.52440	5.09470	4.19530	HepG2	SRSF7
PRPF40A	ENSG00000196504.11	4294.77590	3823.72020	0.16750	2.07920	1.58690	HepG2	SRSF9
PRPF40A	ENSG00000196504.11	5776.61800	4224.51190	0.45130	9.14550	8.22140	HepG2	TAF15
PRPF40A	ENSG00000196504.11	6581.38630	9920.64690	-0.59200	9.35680	8.13880	HepG2	TARDBP
PRPF40A	ENSG00000196504.11	2955.21690	4214.43200	-0.51210	9.32640	8.50350	HepG2	TIAL1
PRPF40A	ENSG00000196504.11	3349.85520	4251.95970	-0.34400	6.88660	6.06630	HepG2	TRIM56
PRPF40A	ENSG00000196504.11	5324.11970	6064.66890	-0.18790	2.85490	2.14690	HepG2	UPF1
PRPF40A	ENSG00000196504.11	4778.21470	5855.20840	-0.29320	6.22970	5.38970	HepG2	UTP3
PRPF40A	ENSG00000196504.11	6714.73890	4425.11930	0.60150	4.83090	3.14790	HepG2	XRCC5
PRPF40A	ENSG00000196504.11	7209.55510	4949.53120	0.54250	3.99740	2.72440	HepG2	XRCC6
PRPF40A	ENSG00000196504.11	3115.09180	4098.47110	-0.39580	2.96990	2.21820	HepG2	XRN2
PRPF40A	ENSG00000196504.11	4376.74850	6669.98300	-0.60780	31.10360	29.77940	HepG2	ZNF622
PRPF40A	ENSG00000196504.11	9506.80130	8040.87620	0.24150	4.53670	3.84190	K562	AGGF1
PRPF40A	ENSG00000196504.11	9819.95000	8366.91010	0.23090	2.03370	1.47090	K562	AKAP8L
PRPF40A	ENSG00000196504.11	8071.38390	11887.55190	-0.55860	8.73960	7.79170	K562	AQR
PRPF40A	ENSG00000196504.11	10015.72340	8778.92920	0.19000	2.23450	1.42240	K562	ATP5C1
PRPF40A	ENSG00000196504.11	5380.34760	6541.17020	-0.28180	4.41790	2.70160	K562	BCCIP
PRPF40A	ENSG00000196504.11	5061.13750	6321.12200	-0.32070	7.02240	5.46710	K562	BCLAF1
PRPF40A	ENSG00000196504.11	10827.31970	13711.43670	-0.34070	3.34130	2.38090	K562	BOP1
PRPF40A	ENSG00000196504.11	6461.79880	8066.49290	-0.32000	3.15760	1.77990	K562	CIRBP
PRPF40A	ENSG00000196504.11	15279.42070	20559.45150	-0.42820	2.31710	1.36160	K562	CNOT7
PRPF40A	ENSG00000196504.11	12441.72170	16165.63850	-0.37770	8.19080	6.26750	K562	CPEB4
PRPF40A	ENSG00000196504.11	9124.45050	14579.20840	-0.67610	16.57750	14.63280	K562	CPSF6
PRPF40A	ENSG00000196504.11	3981.88310	4795.51300	-0.26820	3.67560	2.43270	K562	CSTF2
PRPF40A	ENSG00000196504.11	7834.18200	9251.00220	-0.23980	3.80550	2.37740	K562	DDX21
PRPF40A	ENSG00000196504.11	4562.46300	5828.91190	-0.35340	4.28930	2.95100	K562	DDX3X
PRPF40A	ENSG00000196504.11	19595.00950	16727.14750	0.22820	4.02710	3.26050	K562	DDX47
PRPF40A	ENSG00000196504.11	4856.88300	5909.79640	-0.28310	2.81460	1.49470	K562	DDX6
PRPF40A	ENSG00000196504.11	11754.09800	9003.30700	0.38450	8.14290	6.50280	K562	DKC1
PRPF40A	ENSG00000196504.11	4779.67670	3760.76540	0.34580	3.24980	1.78960	K562	DNAJC21
PRPF40A	ENSG00000196504.11	5017.68400	6402.77450	-0.35170	6.99670	5.02510	K562	EIF2S1
PRPF40A	ENSG00000196504.11	6664.58820	9657.26160	-0.53510	10.73320	9.45740	K562	EIF2S2
PRPF40A	ENSG00000196504.11	4591.05730	5873.82340	-0.35550	2.38960	1.43620	K562	EIF3D
PRPF40A	ENSG00000196504.11	6646.80700	5711.85580	0.21860	2.25220	1.52880	K562	EIF3G
PRPF40A	ENSG00000196504.11	4511.22340	6089.85540	-0.43290	5.37260	4.23120	K562	EIF4A3
PRPF40A	ENSG00000196504.11	4557.21120	5484.32280	-0.26720	3.23650	1.96910	K562	EIF4B
PRPF40A	ENSG00000196504.11	13948.30050	16444.44840	-0.23750	3.28030	2.26020	K562	EIF4G2
PRPF40A	ENSG00000196504.11	4548.34950	5315.87460	-0.22500	2.56110	1.32090	K562	EWSR1
PRPF40A	ENSG00000196504.11	9876.98710	14449.06390	-0.54880	3.15170	2.24450	K562	FIP1L1
PRPF40A	ENSG00000196504.11	10960.52420	14833.96550	-0.43660	5.24830	4.06410	K562	FMR1
PRPF40A	ENSG00000196504.11	9697.84670	12573.10940	-0.37460	3.61190	2.55500	K562	FTO
PRPF40A	ENSG00000196504.11	7224.96790	6333.20730	0.19000	2.40790	1.83640	K562	FXR1
PRPF40A	ENSG00000196504.11	9902.78290	6862.06300	0.52910	3.89360	3.02100	K562	G3BP2
PRPF40A	ENSG00000196504.11	9440.78880	13919.56970	-0.56010	9.71010	8.21240	K562	GPKOW
PRPF40A	ENSG00000196504.11	7450.15550	12870.13920	-0.78870	10.89540	9.36450	K562	GRSF1
PRPF40A	ENSG00000196504.11	3811.39300	7352.59220	-0.94790	8.75060	7.73910	K562	HNRNPC
PRPF40A	ENSG00000196504.11	9603.80870	7517.59570	0.35320	3.18250	1.84890	K562	HNRNPK
PRPF40A	ENSG00000196504.11	11279.17150	15116.87770	-0.42250	6.20790	4.56000	K562	HNRNPL
PRPF40A	ENSG00000196504.11	13057.65430	19591.45890	-0.58530	3.38270	2.50390	K562	HSPD1
PRPF40A	ENSG00000196504.11	11973.24460	8879.33390	0.43120	1.99330	1.30190	K562	KIF1C
PRPF40A	ENSG00000196504.11	8793.89730	13587.04760	-0.62770	12.50460	10.57250	K562	METAP2
PRPF40A	ENSG00000196504.11	7251.55740	10976.13040	-0.59800	25.13650	23.06940	K562	MTPAP
PRPF40A	ENSG00000196504.11	9783.27080	12195.83210	-0.31800	13.89290	12.40140	K562	NSUN2
PRPF40A	ENSG00000196504.11	9358.58500	16400.90460	-0.80940	5.43140	4.22060	K562	PPIG
PRPF40A	ENSG00000196504.11	6410.57300	5338.06500	0.26400	2.23510	1.55730	K562	PRPF8
PRPF40A	ENSG00000196504.11	15063.85420	18699.11900	-0.31190	5.43790	4.07220	K562	PUM2
PRPF40A	ENSG00000196504.11	12913.84550	8297.57980	0.63810	10.41380	9.40710	K562	PUS1
PRPF40A	ENSG00000196504.11	11594.08720	8084.82370	0.52000	12.79880	11.52380	K562	RBM15
PRPF40A	ENSG00000196504.11	3605.59050	6012.54510	-0.73770	7.34770	5.72490	K562	RCC2
PRPF40A	ENSG00000196504.11	5052.29030	6969.79000	-0.46420	6.24810	3.54670	K562	RECQL
PRPF40A	ENSG00000196504.11	8449.29430	12033.63010	-0.51020	14.08530	12.36230	K562	SF3A3
PRPF40A	ENSG00000196504.11	10711.02130	12328.66480	-0.20290	2.51170	1.61440	K562	SRPK2
PRPF40A	ENSG00000196504.11	5888.43170	7260.58330	-0.30220	3.47140	2.27410	K562	SRSF4
PRPF40A	ENSG00000196504.11	5615.89820	7114.05330	-0.34120	3.30490	2.13860	K562	SRSF5
PRPF40A	ENSG00000196504.11	7198.77430	8256.00390	-0.19770	2.67590	1.53090	K562	SRSF7
PRPF40A	ENSG00000196504.11	9855.77960	8080.28570	0.28650	3.67640	1.91080	K562	SRSF9
PRPF40A	ENSG00000196504.11	9710.81760	7120.91610	0.44740	6.61900	5.34050	K562	SYNCRIP
PRPF40A	ENSG00000196504.11	4425.60320	7624.80560	-0.78480	12.55340	10.85490	K562	TARDBP
PRPF40A	ENSG00000196504.11	5192.95380	7354.84030	-0.50210	8.79740	7.22300	K562	TIA1
PRPF40A	ENSG00000196504.11	4502.69620	6340.61570	-0.49380	2.54190	1.64800	K562	TIAL1
PRPF40A	ENSG00000196504.11	5892.44280	7215.97290	-0.29230	2.83050	1.72130	K562	TRA2A
PRPF40A	ENSG00000196504.11	8112.93960	6870.99120	0.23960	2.62890	1.84560	K562	U2AF2
PRPF40A	ENSG00000196504.11	9282.41870	12931.47040	-0.47830	17.14390	15.52300	K562	UPF1
PRPF40A	ENSG00000196504.11	10720.41550	13666.54660	-0.35030	2.94000	1.69730	K562	UTP3
PRPF40A	ENSG00000196504.11	10923.06580	13391.52990	-0.29390	2.95820	2.06120	K562	ZC3H8
PRPF40A	ENSG00000196504.11	9485.14590	7570.95280	0.32510	3.73490	1.59090	K562	ZNF800
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PRPF40A is not available on ENCORE database.

28 RBPs can affect the splicing of PRPF40A :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.15000	0.00000	0.00000	excluded	K562	SF3B4
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153536001	-0.13300	0.00000	0.00000	excluded	K562	PRPF8
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.20100	0.00000	0.00001	excluded	HepG2	PRPF8
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535655			153533964	153533989	153535865	153535986	-0.06400	0.00000	0.00021	excluded	K562	AKAP8L
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153536001	-0.18600	0.00000	0.00000	excluded	HepG2	HNRNPM
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153536001	-0.19200	0.00000	0.00000	excluded	HepG2	DKC1
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	0.05300	0.00038	0.01211	included	HepG2	HNRNPK
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.08900	0.00002	0.02369	excluded	HepG2	TRA2A
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.30800	0.00000	0.00000	excluded	HepG2	QKI
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.08500	0.00000	0.00000	excluded	HepG2	U2AF2
SE	PRPF40A	ENSG00000196504.11	chr2	-	153549671	153549990			153549551	153549582	153551055	153551136	0.08200	0.00000	0.00000	included	K562	AQR
SE	PRPF40A	ENSG00000196504.11	chr2	-	153533964	153533989			153532918	153533293	153535865	153536001	-0.10100	0.00000	0.00000	excluded	K562	AQR
SE	PRPF40A	ENSG00000196504.11	chr2	-	153547475	153547492			153537739	153537850	153549551	153549582	-0.06100	0.00000	0.00000	excluded	K562	AQR
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.18700	0.00000	0.00000	excluded	HepG2	DDX3X
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153536001	-0.06300	0.00000	0.00000	excluded	K562	PUS1
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.36600	0.00000	0.00000	excluded	HepG2	NCBP2
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.06300	0.00000	0.00019	excluded	HepG2	FTO
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.05700	0.00005	0.00460	excluded	K562	EFTUD2
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.08900	0.00110	0.04580	excluded	HepG2	MATR3
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153536001	-0.11300	0.00000	0.00000	excluded	K562	U2AF1
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.10000	0.00000	0.00000	excluded	K562	HNRNPM
SE	PRPF40A	ENSG00000196504.11	chr2	-	153571063	153571143			153550576	153551136	153572508	153572644	0.05100	0.00025	0.02255	included	HepG2	HNRNPL
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535655			153533964	153533989	153535865	153535986	0.05900	0.00000	0.00050	included	HepG2	RBM15
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153536001	-0.08300	0.00109	0.02735	excluded	HepG2	SRSF1
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.25300	0.00000	0.00000	excluded	HepG2	SF3A3
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.13200	0.00000	0.00000	excluded	HepG2	SSB
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.09400	0.00029	0.01726	excluded	HepG2	SF3B4
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153536001	-0.07300	0.00000	0.00000	excluded	K562	UTP18
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.30100	0.00000	0.00000	excluded	K562	U2AF2
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153536001	-0.07900	0.00000	0.00000	excluded	K562	RBM15
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.06200	0.00000	0.00000	excluded	K562	SF3B1
SE	PRPF40A	ENSG00000196504.11	chr2	-	153549551	153549582			153537739	153537850	153551055	153551136	-0.11900	0.00000	0.00010	excluded	K562	SF3B1
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153536001	-0.09800	0.00000	0.00013	excluded	K562	QKI
SE	PRPF40A	ENSG00000196504.11	chr2	-	153535569	153535623			153533964	153533989	153535865	153535986	-0.05500	0.00283	0.09320	excluded	HepG2	HNRNPU
A3SS	PRPF40A	ENSG00000196504.11	chr2	-	153520168	153520300			153520168	153520285	153520389	153520493	0.06600	0.00000	0.00004	longer	HepG2	SF3A3
A3SS	PRPF40A	ENSG00000196504.11	chr2	-	153520389	153520493			153520389	153520481	153520651	153520766	-0.11400	0.00028	0.06172	shorter	HepG2	PTBP1
A3SS	PRPF40A	ENSG00000196504.11	chr2	-	153533964	153534037			153533964	153533989	153535865	153535986	0.12700	0.00200	0.01286	longer	K562	AQR
A3SS	PRPF40A	ENSG00000196504.11	chr2	-	153520389	153520536			153520389	153520493	153520651	153520766	0.16600	0.00000	0.00000	longer	K562	AQR
A3SS	PRPF40A	ENSG00000196504.11	chr2	-	153520389	153520493			153520389	153520481	153520651	153520766	-0.11900	0.00005	0.01396	shorter	K562	PTBP1
A3SS	PRPF40A	ENSG00000196504.11	chr2	-	153520389	153520493			153520389	153520481	153520651	153520766	0.14000	0.00030	0.01687	longer	K562	U2AF1
RI	PRPF40A	ENSG00000196504.11	chr2	-	153515461	153515677			153515461	153515523	153515606	153515677	0.14400	0.00000	0.00000	included	K562	AQR
MXE	PRPF40A	ENSG00000196504.11	chr2	-	153537739	153537850	153551055	153551136	153535865	153535986	153572508	153572640	0.07400	0.00024	0.02865	1included	K562	HNRNPL
MXE	PRPF40A	ENSG00000196504.11	chr2	-	153515461	153515523	153515606	153515703	153514402	153514534	153515783	153515870	0.08700	0.00000	0.00000	1included	K562	DROSHA
MXE	PRPF40A	ENSG00000196504.11	chr2	-	153532918	153533293	153533964	153533989	153530111	153530220	153535569	153535623	-0.07900	0.01071	0.06691	2included	K562	AQR
MXE	PRPF40A	ENSG00000196504.11	chr2	-	153532918	153533293	153533964	153533989	153530111	153530220	153535569	153535623	0.12200	0.00065	0.00565	1included	HepG2	U2AF2
MXE	PRPF40A	ENSG00000196504.11	chr2	-	153537739	153537850	153551055	153551136	153535865	153535986	153572508	153572640	-0.10500	0.00000	0.00051	2included	K562	DDX55

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PRPF40A

General Information

Functions

Localization

Domains (AlphaFold: PRPF40A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PRPF40A is not avaliable on ENCORE database.

47 proteins are bound to PRPF40A RNA:

eCLIP assay for PRPF40A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PRPF40A is not available on ENCORE database.

97 RBPs can affect the gene expression of PRPF40A :

The Knockdown/knockout RNA-Seq assay for PRPF40A is not available on ENCORE database.

28 RBPs can affect the splicing of PRPF40A :

The Knockdown/knockout RNA-Seq assay for PRPF40A is not avaliable on ENCORE database.