PPARGC1B

General Information

Gene Name       : PPARGC1B
Gene ID             : ENSG00000155846.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PPARGC1B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PPARGC1BENSG00000155846.164.945.835.38ENCSR000AEF
HepG2PPARGC1BENSG00000155846.160.580.590.58ENCSR985KAT
K562PPARGC1BENSG00000155846.168.487.808.14ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PPARGC1B is not avaliable on ENCORE database.



Proteins bound to RNA
  • PPARGC1B RNA is bound by 25 proteins.  







eCLIP assay for PPARGC1B is not avaliable on ENCORE database.





25 proteins are bound to PPARGC1B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5149233863149233936+3'-UTR5.7386412.91978K562TARDBP
chr5149234312149234370+3'-UTR4.719993.70177K562PUM2
chr5149234403149234547+3'-UTR6.3830110.92669K562PUM2
chr5149233877149233941+3'-UTR4.202515.80675K562EIF4G2
chr5149233936149234013+3'-UTR5.6705514.82580K562TARDBP
chr5149234405149234556+3'-UTR3.313733.13733K562CPSF6
chr5149214824149214869+CDS,intron-Proximal4.792564.86944K562AQR
chr5149212442149212510+CDS3.918753.44423K562BUD13
chr5149225477149225514+CDS,intron-Proximal4.792564.86944K562AQR
chr5149199996149200104+CDS4.769094.49449K562TROVE2
chr5149200162149200248+CDS,intron-Proximal4.768385.17615K562AQR
chr5149212987149213039+CDS3.971833.01428K562UCHL5
chr5149213340149213400+CDS,intron-Proximal3.831154.89208K562AQR
chr5149112415149112450+intron-Distal8.6223586.81804K562DGCR8
chr5149111205149111302+intron-Distal4.000304.16295K562FUS
chr5149111610149111667+intron-Distal3.687794.76898K562CSTF2T
chr5149112158149112195+intron-Distal5.8218413.64593K562DGCR8
chr5149111509149111561+intron-Distal3.362394.25110K562CSTF2T
chr5149112601149112665+intron-Distal5.4201817.83540K562DGCR8
chr5149111285149111342+intron-Distal4.274629.66093K562NONO
chr5149112617149112645+intron-Distal4.256006.34856K562DROSHA
chr5149111514149111594+intron-Distal3.7510911.27307K562NONO
chr5149111628149111683+intron-Distal3.606814.73842K562EWSR1
chr5149157746149157841+intron-Distal5.3713715.26370K562AGGF1
chr5149111195149111245+intron-Distal4.370194.70168K562CSTF2T
chr5149112289149112353+intron-Distal5.4736419.35470K562DGCR8
chr5149111565149111639+intron-Distal3.687255.73969K562EIF4G2
chr5149111269149111356+intron-Distal5.176619.69896K562CSTF2T
chr5149151849149151968+intron-Distal4.981527.38107K562HNRNPM
chr5149151767149151829+intron-Distal,intron-Proximal4.348554.80399K562EXOSC5
chr5149111679149111774+intron-Distal4.3005913.01646K562NONO
chr5149112388149112405+intron-Distal5.3664716.69901K562DGCR8
chr5149123148149123289+intron-Distal3.347163.92720K562TARDBP
chr5149157741149157905+intron-Distal4.8696415.90727K562HNRNPL
chr5149151829149151919+intron-Distal3.581214.61337K562EXOSC5
chr5149111648149111695+intron-Distal4.2315013.52172K562TARDBP
chr5149112461149112497+intron-Distal6.248758.47410K562DROSHA
chr5149112456149112491+intron-Distal5.5125610.58144K562DGCR8
chr5149114245149114313+intron-Distal3.499713.65489K562CPSF6
chr5149110738149110854+intron-Distal3.792513.74713K562FUS
chr5149111069149111120+intron-Distal4.310005.01722K562CSTF2T
chr5149140683149140748+intron-Distal4.180014.37030K562KHSRP
chr5149214318149214438+intron-Distal,intron-Proximal4.030826.35873K562PRPF8
chr5149112295149112346+intron-Distal6.5204413.73594K562DROSHA
chr5149111251149111310+intron-Distal4.377094.16830K562EWSR1
chr5149214299149214389+intron-Distal,intron-Proximal4.085045.47926K562AQR
chr5149111547149111615+intron-Distal5.5252020.92124K562DGCR8
chr5149111415149111549+intron-Distal6.1391410.69070K562DDX52
chr5149157673149157741+intron-Distal3.760756.46071K562HNRNPL
chr5149111216149111294+intron-Distal3.837504.89657K562EIF4G2
chr5149157180149157235+intron-Distal4.369585.74422K562HNRNPL
chr5149110828149110868+intron-Distal3.359903.41960K562GTF2F1
chr5149156943149157025+intron-Distal4.037455.16718K562AGGF1
chr5149157875149157925+intron-Distal4.831185.72900K562AGGF1
chr5149110637149110688+intron-Distal3.585457.09842K562NONO
chr5149110795149110871+intron-Distal4.7237013.91761K562NONO
chr5149112353149112379+intron-Distal4.394908.89480K562DGCR8
chr5149157677149157746+intron-Distal6.0833114.99892K562AGGF1
chr5149110641149110683+intron-Distal3.412126.74466K562DROSHA
chr5149110798149110872+intron-Distal3.883426.34048K562CSTF2T
chr5149110392149110435+intron-Distal3.839516.77154K562NONO
chr5149111617149111648+intron-Distal5.9591418.07529K562TARDBP
chr5149114044149114120+intron-Distal3.757049.31101K562KHSRP
chr5149152644149152785+intron-Distal4.875385.57532K562HNRNPM
chr5149152456149152514+intron-Distal4.423174.66266K562TARDBP
chr5149110838149110869+intron-Distal4.286465.23270K562GEMIN5
chr5149111223149111258+intron-Distal5.133449.04913K562DROSHA
chr5149110804149110883+intron-Distal5.3887610.11803K562EWSR1
chr5149112406149112461+intron-Distal4.496293.61881HepG2DGCR8
chr5149111814149111864+intron-Distal3.383126.35096K562NONO
chr5149111630149111675+intron-Distal4.2729313.02048K562DROSHA
chr5149111628149111679+intron-Distal4.4311511.18703K562NONO
chr5149157769149157938+intron-Distal4.8060911.38030K562GTF2F1
chr5149110599149110715+intron-Distal3.780945.78686K562SLTM
chr5149114134149114190+intron-Distal3.577425.56048K562KHSRP
chr5149151959149152035+intron-Distal3.546445.27598K562TARDBP
chr5149111503149111616+intron-Distal3.759048.29689K562EWSR1
chr5149111565149111611+intron-Distal4.9617112.35816K562DROSHA
chr5149112231149112282+intron-Distal4.9569112.93491K562DGCR8
chr5149111701149111758+intron-Distal3.9963512.48080K562DGCR8
chr5149157235149157304+intron-Distal4.441375.53787K562HNRNPL
chr5149111615149111677+intron-Distal4.7852423.64865K562DGCR8
chr5149111804149111834+intron-Distal3.898083.17740K562CSTF2T
chr5149111732149111772+intron-Distal3.495594.23616K562TIA1
chr5149157403149157509+intron-Distal3.143274.95846K562HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PPARGC1B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PPARGC1B is not available on ENCORE database.

  • 111 RBPs can affect the levels of PPARGC1B.  








The Knockdown/knockout RNA-Seq assay for PPARGC1B is not available on ENCORE database.





111 RBPs can affect the gene expression of PPARGC1B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PPARGC1BENSG00000155846.1263.8913033.199200.944402.308001.74360HepG2ACO1
PPARGC1BENSG00000155846.12115.0256036.212801.667305.982005.23460HepG2AKAP1
PPARGC1BENSG00000155846.1262.86760110.19230-0.809602.473801.90430HepG2BOP1
PPARGC1BENSG00000155846.1283.6428033.199501.333004.761603.93400HepG2CKAP4
PPARGC1BENSG00000155846.1259.48800101.15810-0.765902.053401.45060HepG2CPSF6
PPARGC1BENSG00000155846.1287.1119034.688301.328303.893603.16260HepG2DDX3X
PPARGC1BENSG00000155846.1277.6770030.823001.333403.198402.46130HepG2EIF4B
PPARGC1BENSG00000155846.1254.49770113.31070-1.056003.565102.89610HepG2ETF1
PPARGC1BENSG00000155846.1260.23940114.65850-0.928602.266901.68430HepG2GPKOW
PPARGC1BENSG00000155846.1261.1548031.700300.947902.376801.46500HepG2HDGF
PPARGC1BENSG00000155846.1264.24210112.09410-0.803102.934402.19700HepG2HNRNPF
PPARGC1BENSG00000155846.1264.4424030.005901.102702.336801.69260HepG2HNRNPK
PPARGC1BENSG00000155846.1256.36900110.37990-0.969503.523402.71330HepG2IGF2BP1
PPARGC1BENSG00000155846.12180.8596030.117202.5861018.8554017.27250HepG2IGF2BP2
PPARGC1BENSG00000155846.12124.1453032.131601.949908.472607.41920HepG2MATR3
PPARGC1BENSG00000155846.1234.29920111.62250-1.702405.459204.07100HepG2MTPAP
PPARGC1BENSG00000155846.12131.4417032.888101.998709.710608.56560HepG2NCBP2
PPARGC1BENSG00000155846.1223.7272053.99290-1.186202.774902.00940HepG2NOL12
PPARGC1BENSG00000155846.1279.2270029.287301.435604.377503.48320HepG2PABPC4
PPARGC1BENSG00000155846.12108.8404027.180202.001506.441905.57620HepG2PCBP1
PPARGC1BENSG00000155846.1282.2387027.651701.572405.424904.71320HepG2PTBP1
PPARGC1BENSG00000155846.12109.2323051.536601.083603.745803.06390HepG2PUF60
PPARGC1BENSG00000155846.1299.6477054.703300.865102.832302.23380HepG2PUM1
PPARGC1BENSG00000155846.1276.5392033.816701.178403.682802.99350HepG2PUS1
PPARGC1BENSG00000155846.1269.5403029.958601.214802.918002.27920HepG2QKI
PPARGC1BENSG00000155846.1277.3704029.434201.394203.087502.03830HepG2RBM27
PPARGC1BENSG00000155846.1257.69170120.76410-1.065804.207803.39280HepG2RPLP0
PPARGC1BENSG00000155846.1290.3185027.710901.704504.891103.45110HepG2RPS5
PPARGC1BENSG00000155846.1258.8078027.063601.119602.455801.56780HepG2SERBP1
PPARGC1BENSG00000155846.1263.09180106.97070-0.761702.464201.98160HepG2SRFBP1
PPARGC1BENSG00000155846.1257.25810110.13140-0.943703.673802.88930HepG2SRSF7
PPARGC1BENSG00000155846.1259.4876024.448401.282803.273202.68300HepG2SRSF9
PPARGC1BENSG00000155846.1222.5523092.87890-2.042109.057908.23420HepG2SSB
PPARGC1BENSG00000155846.12102.4607055.933000.873202.645301.38920HepG2SSRP1
PPARGC1BENSG00000155846.12125.6794056.630101.150003.317501.85470HepG2SUGP2
PPARGC1BENSG00000155846.1216.8436057.62400-1.774503.963203.17610HepG2SUPV3L1
PPARGC1BENSG00000155846.12102.0058027.004401.917308.670407.76710HepG2TAF15
PPARGC1BENSG00000155846.12109.6816051.848801.080803.364602.67740HepG2U2AF1
PPARGC1BENSG00000155846.1286.1589034.036501.339804.402803.44440HepG2UCHL5
PPARGC1BENSG00000155846.12168.2524062.315901.432909.722708.54870HepG2UPF1
PPARGC1BENSG00000155846.1220.7597052.75130-1.345402.428901.49250HepG2UPF2
PPARGC1BENSG00000155846.12152.7544060.164001.344107.219706.32820HepG2UTP3
PPARGC1BENSG00000155846.1223.4184056.72470-1.276302.694601.97940HepG2XRN2
PPARGC1BENSG00000155846.1224.4253074.27100-1.604405.354404.46970HepG2ZC3H8
PPARGC1BENSG00000155846.121006.21730711.693100.499504.716903.13010K562AARS
PPARGC1BENSG00000155846.121663.657102224.67580-0.419203.998402.50770K562ABCF1
PPARGC1BENSG00000155846.12471.00050858.98330-0.866908.674307.74400K562AGGF1
PPARGC1BENSG00000155846.12610.15050943.78190-0.629307.144405.38170K562AKAP8
PPARGC1BENSG00000155846.12660.38690893.78370-0.436603.758302.99500K562AKAP8L
PPARGC1BENSG00000155846.12683.932801764.50550-1.3673030.6044028.84830K562AQR
PPARGC1BENSG00000155846.12709.14280937.74280-0.403103.588702.53750K562ATP5C1
PPARGC1BENSG00000155846.12437.132701012.79160-1.2122018.7091016.43670K562BOP1
PPARGC1BENSG00000155846.12803.569001089.98710-0.439804.628702.64640K562CEBPZ
PPARGC1BENSG00000155846.121138.016001612.41210-0.502702.522601.51750K562CNOT7
PPARGC1BENSG00000155846.12756.245001076.87000-0.509905.480504.38300K562CPSF6
PPARGC1BENSG00000155846.12574.04650753.29560-0.392002.424101.44350K562CSTF2
PPARGC1BENSG00000155846.122071.267302695.69740-0.380103.094202.06390K562CELF1
PPARGC1BENSG00000155846.12888.814401252.81860-0.495206.860804.91810K562DDX21
PPARGC1BENSG00000155846.12648.62690870.38460-0.424302.768401.44720K562DDX27
PPARGC1BENSG00000155846.121349.936702006.10330-0.571505.591804.71300K562DDX47
PPARGC1BENSG00000155846.12914.623201577.90100-0.7868017.7044016.11560K562EIF2S2
PPARGC1BENSG00000155846.12830.583301110.72290-0.419302.529201.54540K562EIF3D
PPARGC1BENSG00000155846.121566.771402192.89520-0.485004.366703.19670K562EIF4G2
PPARGC1BENSG00000155846.12556.45340789.84590-0.505304.323902.28690K562FASTKD2
PPARGC1BENSG00000155846.121033.923701599.27900-0.629307.852406.34910K562FIP1L1
PPARGC1BENSG00000155846.12507.97090675.81650-0.411902.372501.34000K562FKBP4
PPARGC1BENSG00000155846.12820.974701095.72470-0.416503.351302.40460K562FMR1
PPARGC1BENSG00000155846.12504.57600928.74070-0.8802010.089408.23670K562FTO
PPARGC1BENSG00000155846.121107.88090707.885800.646109.821808.76290K562FXR1
PPARGC1BENSG00000155846.121146.376101566.22970-0.450206.098304.44770K562GLRX3
PPARGC1BENSG00000155846.12542.090901028.13140-0.9234013.4903011.72210K562GPKOW
PPARGC1BENSG00000155846.12950.257202102.68660-1.1458027.4469024.97600K562GRSF1
PPARGC1BENSG00000155846.12818.637101046.48780-0.354302.962701.84880K562HNRNPA1
PPARGC1BENSG00000155846.12509.64920831.00220-0.705303.096001.78450K562HNRNPA2B1
PPARGC1BENSG00000155846.121050.472901508.96300-0.522502.959401.33440K562HNRNPAB
PPARGC1BENSG00000155846.12519.76790779.12890-0.584003.561502.89510K562HNRNPC
PPARGC1BENSG00000155846.12864.613101315.48760-0.605505.447404.08430K562HNRNPM
PPARGC1BENSG00000155846.12915.241801158.92180-0.340603.326402.34850K562HNRNPU
PPARGC1BENSG00000155846.12931.692702168.20180-1.2186027.0349024.81880K562HSPD1
PPARGC1BENSG00000155846.12928.099701471.81030-0.665203.714202.03960K562ILF2
PPARGC1BENSG00000155846.12573.94000793.98330-0.468203.421201.75690K562ILF3
PPARGC1BENSG00000155846.12437.81210767.35230-0.809608.528905.99360K562KHDRBS1
PPARGC1BENSG00000155846.12550.52200948.62350-0.785006.937105.49100K562KIF1C
PPARGC1BENSG00000155846.12432.47490877.93390-1.021509.678807.82020K562KRR1
PPARGC1BENSG00000155846.121057.99910753.969500.488702.828401.42280K562LARP7
PPARGC1BENSG00000155846.12960.12680776.464300.306202.268001.50300K562MAGOH
PPARGC1BENSG00000155846.12600.81190907.98860-0.595806.276804.39820K562MAK16
PPARGC1BENSG00000155846.12769.276201003.57710-0.383602.946702.04070K562METAP2
PPARGC1BENSG00000155846.12948.368301646.69270-0.7961020.6176018.70900K562MTPAP
PPARGC1BENSG00000155846.12971.359901829.58770-0.9134035.7392033.56670K562NSUN2
PPARGC1BENSG00000155846.12765.444001088.26520-0.507703.757701.52250K562PA2G4
PPARGC1BENSG00000155846.12434.27030726.96720-0.743303.258702.15970K562PABPN1
PPARGC1BENSG00000155846.121262.55800690.790300.8699013.2763011.02120K562PCBP2
PPARGC1BENSG00000155846.12891.205501679.26120-0.9140012.5648010.80490K562PCBP3
PPARGC1BENSG00000155846.12772.327901288.03400-0.7379011.522009.94520K562POLR2G
PPARGC1BENSG00000155846.121159.438301815.58130-0.647008.100806.52670K562PPIG
PPARGC1BENSG00000155846.12614.306601009.43110-0.716507.478606.24560K562PRPF8
PPARGC1BENSG00000155846.12925.94990754.412700.295502.156601.55850K562PTBP1
PPARGC1BENSG00000155846.121771.809502493.62860-0.493003.920602.77310K562PUM2
PPARGC1BENSG00000155846.12311.73670886.58340-1.5079018.4932017.12090K562PUS1
PPARGC1BENSG00000155846.12473.31100863.68020-0.867708.450207.43940K562RBM15
PPARGC1BENSG00000155846.12832.35230637.078800.385602.932701.91020K562RCC2
PPARGC1BENSG00000155846.12425.296601028.26730-1.2737017.7611015.68870K562RPS19
PPARGC1BENSG00000155846.12519.538201032.15360-0.990409.583007.22120K562RRP9
PPARGC1BENSG00000155846.121420.049101805.38930-0.346404.618503.58720K562SF3A3
PPARGC1BENSG00000155846.12747.95930977.84210-0.386602.351801.46050K562SF3B1
PPARGC1BENSG00000155846.12969.88470530.859600.8694014.6550012.56740K562SF3B4
PPARGC1BENSG00000155846.12609.63020837.07150-0.457403.513502.06980K562SLBP
PPARGC1BENSG00000155846.12621.04730466.474600.412802.653001.62800K562SRSF4
PPARGC1BENSG00000155846.12798.642201118.04370-0.485406.283404.51090K562SRSF7
PPARGC1BENSG00000155846.12462.09920761.56560-0.720809.321306.89570K562SSB
PPARGC1BENSG00000155846.121598.467302098.27040-0.392503.455201.90880K562SSRP1
PPARGC1BENSG00000155846.121403.381401919.08510-0.451503.784002.28240K562STAU1
PPARGC1BENSG00000155846.12487.77360913.31020-0.904904.495202.51310K562SUPT6H
PPARGC1BENSG00000155846.12588.14770977.43340-0.732806.852905.20370K562SUPV3L1
PPARGC1BENSG00000155846.12832.17250532.126100.645006.441403.97080K562TBRG4
PPARGC1BENSG00000155846.12465.92040671.88990-0.528102.976402.00290K562TIAL1
PPARGC1BENSG00000155846.12453.88630713.53680-0.652704.230903.00700K562TRIM56
PPARGC1BENSG00000155846.12758.24520494.928400.615304.792703.27490K562U2AF1
PPARGC1BENSG00000155846.12794.161801034.44990-0.381402.525001.55810K562UCHL5
PPARGC1BENSG00000155846.12910.676801939.95350-1.0910040.7476038.40060K562UPF1
PPARGC1BENSG00000155846.12842.000501659.95230-0.9792020.2652017.95820K562WDR3
PPARGC1BENSG00000155846.121087.262701726.18950-0.6669017.1873015.34020K562WDR43
PPARGC1BENSG00000155846.121601.321002090.38530-0.384504.088202.51140K562WRN
PPARGC1BENSG00000155846.121210.289301987.88650-0.7159011.167209.30140K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PPARGC1B is not available on ENCORE database.






No RBPs affect the alternative splcing events of PPARGC1B on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PPARGC1B is not avaliable on ENCORE database.