PEPD

General Information

Gene Name       : PEPD
Gene ID             : ENSG00000124299.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PEPD)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PEPDENSG00000124299.139.1713.6811.43ENCSR000AEF
HepG2PEPDENSG00000124299.1377.8458.4668.15ENCSR985KAT
K562PEPDENSG00000124299.139.2412.1210.68ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PEPD is not avaliable on ENCORE database.



Proteins bound to RNA
  • PEPD RNA is bound by 22 proteins.  







eCLIP assay for PEPD is not avaliable on ENCORE database.





22 proteins are bound to PEPD RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193396895033968997-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.427923.68241HepG2G3BP1
chr193395489233954967-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.627894.24993HepG2PPIG
chr193387813533878245-3'-UTR,intron-Distal5.599119.06009HepG2LARP4
chr193388227833882340-CDS,intron-Distal,intron-Proximal4.125334.75480HepG2RPS3
chr193400356234003630-CDS,intron-Distal4.998843.82187HepG2RPS3
chr193400349834003683-CDS,intron-Distal,intron-Proximal5.256355.39850K562DDX3X
chr193401257434012655-CDS,intron-Distal4.607704.02817HepG2PRPF8
chr193390254233902592-CDS,intron-Distal,intron-Proximal3.878235.64484HepG2PRPF8
chr193394777533947838-intron-Distal5.2859816.68855HepG2AGGF1
chr193394777633947851-intron-Distal4.121756.27063HepG2HNRNPL
chr193394799733948036-intron-Distal4.437578.96042HepG2AGGF1
chr193394901633949086-intron-Distal5.4199310.56139HepG2LARP4
chr193394900133949075-intron-Distal7.2981225.65439HepG2XPO5
chr193395933933959355-intron-Distal7.0336823.42353HepG2XPO5
chr193394891733949011-intron-Distal6.1442814.32171HepG2CDC40
chr193395005933950179-intron-Distal5.049399.44993HepG2GTF2F1
chr193394943533949445-intron-Distal4.342756.90182HepG2HNRNPL
chr193394974133949793-intron-Distal6.0539812.78191HepG2HNRNPL
chr193394890833949007-intron-Distal5.9284163.96719HepG2AGGF1
chr193394966733949731-intron-Distal5.5847113.83086HepG2HNRNPL
chr193394967333949775-intron-Distal5.7294139.94405HepG2AGGF1
chr193394868033948740-intron-Distal4.7685018.39172HepG2LARP4
chr193395005933950174-intron-Distal5.6633112.11710K562GTF2F1
chr193394947133949483-intron-Distal4.101866.46897HepG2HNRNPL
chr193395009133950157-intron-Distal6.7341423.60376K562AGGF1
chr193394700633947065-intron-Distal4.945259.42347HepG2AGGF1
chr193394757433947591-intron-Distal3.853713.15159HepG2LARP4
chr193395282733952898-intron-Distal4.330084.23722HepG2AGGF1
chr193400178534001863-intron-Distal,intron-Proximal4.858966.33281HepG2FAM120A
chr193395935533959389-intron-Distal7.3470129.00592HepG2XPO5
chr193394982433949902-intron-Distal5.5419011.76398HepG2LARP4
chr193394929033949338-intron-Distal5.3692630.16735HepG2AGGF1
chr193394982833949896-intron-Distal3.998793.45420HepG2EIF3D
chr193394868233948741-intron-Distal6.5105220.04616HepG2CDC40
chr193393566733935759-intron-Distal3.158833.49516HepG2CSTF2T
chr193392199833922078-intron-Distal5.018184.57427HepG2PCBP2
chr193394788033947907-intron-Distal5.235047.88553HepG2AGGF1
chr193395008033950107-intron-Distal6.5504816.29200HepG2HNRNPL
chr193395256433952628-intron-Distal3.464913.15341HepG2AGGF1
chr193394992833949972-intron-Distal3.351174.85044HepG2GTF2F1
chr193394868133948739-intron-Distal7.4577534.21486HepG2AGGF1
chr193394888633948935-intron-Distal5.7310319.58929K562AGGF1
chr193395004533950134-intron-Distal4.251323.12328HepG2DDX52
chr193395034233950374-intron-Distal4.421745.18898HepG2LARP4
chr193394937433949429-intron-Distal5.7093827.57725HepG2AGGF1
chr193392200233922077-intron-Distal4.270578.79903HepG2PTBP1
chr193391945633919525-intron-Distal3.290553.48399HepG2CSTF2T
chr193394921433949320-intron-Distal6.5533732.66543HepG2XPO5
chr193394919233949291-intron-Distal5.8732230.32564HepG2HNRNPL
chr193394934233949429-intron-Distal4.8926114.93837HepG2HNRNPL
chr193395096433950996-intron-Distal4.141224.73828HepG2AGGF1
chr193394984633949905-intron-Distal3.722033.10765HepG2YBX3
chr193394718933947236-intron-Distal4.029267.72442HepG2AGGF1
chr193394906133949126-intron-Distal5.8188642.57643HepG2AGGF1
chr193394892233949050-intron-Distal6.2177519.86752HepG2GTF2F1
chr193394710733947154-intron-Distal5.637988.39886HepG2AGGF1
chr193395096433951026-intron-Distal4.557755.48383HepG2LARP4
chr193394806233948128-intron-Distal5.217549.23338HepG2XPO5
chr193394868433948749-intron-Distal4.603126.04620HepG2YBX3
chr193394777533947851-intron-Distal5.471819.66021HepG2LARP4
chr193394958833949701-intron-Distal7.3702626.77093HepG2XPO5
chr193395938933959402-intron-Distal5.072794.22343HepG2XPO5
chr193395005533950163-intron-Distal4.334456.24168HepG2CSTF2
chr193394944533949471-intron-Distal3.921136.61329HepG2HNRNPL
chr193394918033949219-intron-Distal7.3267935.51480HepG2AGGF1
chr193394904333949122-intron-Distal4.337025.32145HepG2YBX3
chr193394901233949071-intron-Distal5.6572715.22109HepG2HNRNPL
chr193394888833949001-intron-Distal8.1165249.19646HepG2XPO5
chr193394962533949692-intron-Distal5.398848.46072HepG2LARP4
chr193394919033949246-intron-Distal7.2697838.04009K562AGGF1
chr193394921933949290-intron-Distal6.3469046.77211HepG2AGGF1
chr193393506033935144-intron-Distal3.873053.18939HepG2RBFOX2
chr193394999033950028-intron-Distal4.689775.18898HepG2LARP4
chr193394997133950029-intron-Distal3.936414.20699HepG2YBX3
chr193394912233949186-intron-Distal3.823813.48371HepG2YBX3
chr193394909433949192-intron-Distal6.2735126.84588HepG2HNRNPL
chr193394756133947601-intron-Distal4.597259.92249HepG2AGGF1
chr193394912433949208-intron-Distal7.1829129.56503HepG2XPO5
chr193394940933949473-intron-Distal5.4534910.56139HepG2LARP4
chr193395127133951427-intron-Distal4.137556.25649HepG2CDC40
chr193395007033950170-intron-Distal5.3834716.91974HepG2CDC40
chr193401182434011892-intron-Distal4.731855.25173HepG2RBFOX2
chr193394888933949039-intron-Distal4.2643110.48625HepG2YBX3
chr193395067433950710-intron-Distal4.487833.70058HepG2XPO5
chr193388528333885342-intron-Distal4.166083.63902HepG2CSTF2T
chr193394763733947650-intron-Distal3.659103.83898HepG2AGGF1
chr193395009433950124-intron-Distal6.5881343.86065HepG2AGGF1
chr193394755033947622-intron-Distal4.165996.03284HepG2HNRNPL
chr193394959633949673-intron-Distal7.6508138.19442HepG2AGGF1
chr193394963333949667-intron-Distal4.925219.01740HepG2HNRNPL
chr193394920333949377-intron-Distal5.2031110.16454HepG2YBX3
chr193394948333949517-intron-Distal4.324305.88747HepG2HNRNPL
chr193395005633950165-intron-Distal4.797648.27917HepG2YBX3
chr193395006533950192-intron-Distal5.6770626.62929HepG2LARP4
chr193394868333948739-intron-Distal4.7889012.35528HepG2XPO5
chr193394952333949584-intron-Distal5.9640822.31768HepG2AGGF1
chr193395007133950206-intron-Distal4.822818.07779K562YBX3
chr193395000333950155-intron-Distal4.283956.62134HepG2EIF3D
chr193394998133950022-intron-Distal4.975327.66078HepG2XPO5
chr193394942933949461-intron-Distal5.4936924.63006HepG2AGGF1
chr193392698233927174-intron-Distal5.5537211.31526HepG2PTBP1
chr193394755733947595-intron-Distal5.286305.28062HepG2XPO5
chr193394891333949035-intron-Distal3.224373.62826K562HNRNPL
chr193394869133948738-intron-Distal5.7995020.50410K562AGGF1
chr193394733933947413-intron-Distal4.916703.27714HepG2HNRNPL
chr193394890733949016-intron-Distal6.1652618.97363HepG2LARP4
chr193394995733950029-intron-Distal4.359903.77360K562GTF2F1
chr193395012433950149-intron-Distal7.0819126.45695HepG2AGGF1
chr193395007433950167-intron-Distal5.272435.05269K562DHX30
chr193394946133949482-intron-Distal4.9236218.96410HepG2AGGF1
chr193394895533949030-intron-Distal3.761524.50478HepG2FTO
chr193395005133950094-intron-Distal6.0959631.45138HepG2AGGF1
chr193395006733950126-intron-Distal5.1226814.19322HepG2XPO5
chr193395006133950185-intron-Distal5.026018.77667K562HNRNPL
chr193394915133949293-intron-Distal5.9496616.02610HepG2GTF2F1
chr193394980233949869-intron-Distal7.4700253.03584HepG2AGGF1
chr193394936733949494-intron-Distal6.5249028.24462HepG2XPO5
chr193394933833949374-intron-Distal5.2490920.69810HepG2AGGF1
chr193394786133947910-intron-Distal3.492134.63830HepG2LARP4
chr193394948233949523-intron-Distal5.1133716.00659HepG2AGGF1
chr193394890333949012-intron-Distal5.3716933.05174HepG2HNRNPL
chr193394893533949009-intron-Distal7.1611530.15131K562AGGF1
chr193388594933886028-intron-Distal4.053083.44758HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PEPD is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PEPD is not available on ENCORE database.

  • 96 RBPs can affect the levels of PEPD.  








The Knockdown/knockout RNA-Seq assay for PEPD is not available on ENCORE database.





96 RBPs can affect the gene expression of PEPD :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PEPDENSG00000124299.9338.11950555.58420-0.716503.582002.36990HepG2AATF
PEPDENSG00000124299.91720.15040960.534100.8405010.273808.64440HepG2ABCF1
PEPDENSG00000124299.9727.86910970.14050-0.414505.286104.49860HepG2ACO1
PEPDENSG00000124299.91067.508001564.40630-0.551404.424103.77310HepG2AKAP1
PEPDENSG00000124299.9803.17520974.61170-0.279102.537401.79940HepG2AKAP8L
PEPDENSG00000124299.9534.40300295.524900.854503.605801.71200HepG2APOBEC3C
PEPDENSG00000124299.91113.991601429.72680-0.360004.426103.59400HepG2AUH
PEPDENSG00000124299.9889.98800647.732400.458303.690903.01100HepG2BOP1
PEPDENSG00000124299.92324.694701229.735500.9186014.6704013.05410HepG2CIRBP
PEPDENSG00000124299.9676.90130498.761600.440503.004801.94130HepG2YBX3
PEPDENSG00000124299.91307.48900897.193000.5432010.827109.39400HepG2DDX19B
PEPDENSG00000124299.9675.59740499.511000.435503.409502.12190HepG2DDX1
PEPDENSG00000124299.9875.17140612.292600.515202.478001.83270HepG2DDX21
PEPDENSG00000124299.9316.28170572.22590-0.855404.555902.79770HepG2DDX28
PEPDENSG00000124299.92025.125901498.419500.434503.513202.81800HepG2DDX3X
PEPDENSG00000124299.91043.51490775.614300.427903.357702.25130HepG2DDX5
PEPDENSG00000124299.9779.813101287.55810-0.723406.764505.83260HepG2DDX6
PEPDENSG00000124299.91148.47190928.134600.307203.088902.37890HepG2DKC1
PEPDENSG00000124299.9638.54340489.822300.382402.696101.99900HepG2DNAJC21
PEPDENSG00000124299.91142.42730651.198500.810809.137207.58000HepG2EEF2
PEPDENSG00000124299.9200.58040564.31120-1.4923012.019109.89850HepG2AGO1
PEPDENSG00000124299.9747.928601237.37900-0.726306.177305.31060HepG2EIF2S1
PEPDENSG00000124299.9964.62470578.590400.7373010.060708.25830HepG2EIF3G
PEPDENSG00000124299.9724.111001331.57650-0.878907.488506.38680HepG2EIF4B
PEPDENSG00000124299.91390.220301641.57310-0.239802.635202.04540HepG2ETF1
PEPDENSG00000124299.91162.14070947.908000.293902.166301.42780HepG2EWSR1
PEPDENSG00000124299.9474.248201069.14910-1.1727021.4091019.33510HepG2FUBP3
PEPDENSG00000124299.9716.155401279.92470-0.837709.636808.43310HepG2G3BP1
PEPDENSG00000124299.91090.72760674.095800.694206.432605.48420HepG2GPKOW
PEPDENSG00000124299.91054.233301296.72630-0.298702.001001.40020HepG2HNRNPK
PEPDENSG00000124299.9584.12510839.38590-0.523107.115206.07950HepG2HNRNPL
PEPDENSG00000124299.91171.38300643.301400.8645010.858209.71150HepG2HNRNPLL
PEPDENSG00000124299.91099.63530765.032000.523306.078405.04620HepG2IGF2BP1
PEPDENSG00000124299.91658.938301300.910800.350602.504501.85890HepG2IGF2BP2
PEPDENSG00000124299.9587.822401221.27000-1.054904.369803.13960HepG2IGF2BP3
PEPDENSG00000124299.9467.31420308.505000.599002.991901.60800HepG2ILF3
PEPDENSG00000124299.91704.080101132.684900.589104.657303.57270HepG2LARP4
PEPDENSG00000124299.9800.38130581.835400.460002.993901.73000HepG2LIN28B
PEPDENSG00000124299.92089.379501388.191800.589805.438804.57940HepG2MATR3
PEPDENSG00000124299.9373.67590553.13620-0.565802.400201.41750HepG2METAP2
PEPDENSG00000124299.9577.71340784.85230-0.442103.683302.75210HepG2MSI2
PEPDENSG00000124299.91874.198701420.817500.399502.872002.22730HepG2NCBP2
PEPDENSG00000124299.9586.63270389.713500.589903.115301.57820HepG2NOLC1
PEPDENSG00000124299.9835.31900570.404800.550204.374803.43920HepG2NSUN2
PEPDENSG00000124299.91093.025601305.44670-0.256202.730202.12620HepG2PCBP1
PEPDENSG00000124299.9664.34700487.338000.446902.358701.67290HepG2PPIL4
PEPDENSG00000124299.9738.02950589.455800.324202.667201.90590HepG2PRPF4
PEPDENSG00000124299.9944.522901328.27060-0.491907.679406.85850HepG2PTBP1
PEPDENSG00000124299.92282.54650872.278301.3877039.9523038.01820HepG2PUF60
PEPDENSG00000124299.91369.54250988.135700.470807.971007.01610HepG2PUS1
PEPDENSG00000124299.9886.415501438.69970-0.698708.231507.24160HepG2QKI
PEPDENSG00000124299.9329.49270566.90830-0.782902.611701.92650HepG2RAVER1
PEPDENSG00000124299.9699.030401068.76330-0.612504.132103.10890HepG2RBM15
PEPDENSG00000124299.9719.255801305.65580-0.860206.547305.55060HepG2RBM25
PEPDENSG00000124299.9889.39340542.846900.712205.637204.11800HepG2RCC2
PEPDENSG00000124299.9988.243501376.72590-0.478303.608702.91760HepG2RECQL
PEPDENSG00000124299.9796.30940514.380700.630406.346605.45700HepG2RPS19
PEPDENSG00000124299.9863.04320616.475400.485303.156102.30100HepG2RPS2
PEPDENSG00000124299.9655.01320317.827201.043209.136007.71430HepG2RPS3A
PEPDENSG00000124299.9418.82510576.26310-0.460402.334101.60570HepG2RRP9
PEPDENSG00000124299.9734.07770486.601400.593106.555105.62640HepG2SAFB2
PEPDENSG00000124299.9918.043601383.02720-0.591207.438606.54580HepG2SF3B4
PEPDENSG00000124299.91216.38690836.428600.5402010.228709.01280HepG2SLBP
PEPDENSG00000124299.9715.51990567.495700.334302.033601.46870HepG2SMN1
PEPDENSG00000124299.9917.960601549.64800-0.7554018.9550017.95140HepG2SRFBP1
PEPDENSG00000124299.91158.171001443.52950-0.317804.027803.48380HepG2SRSF1
PEPDENSG00000124299.91216.43220861.276800.498007.801806.82090HepG2SRSF5
PEPDENSG00000124299.9725.660701174.34380-0.6945011.8770010.87500HepG2SRSF9
PEPDENSG00000124299.92404.824501345.425800.8378028.3438027.09040HepG2SSB
PEPDENSG00000124299.9668.652701297.35780-0.9562020.4443019.11640HepG2TAF15
PEPDENSG00000124299.9912.80940627.001600.541704.810303.89040HepG2TARDBP
PEPDENSG00000124299.9636.584201192.24660-0.9053016.4515014.46700HepG2TIA1
PEPDENSG00000124299.91011.96380531.052000.930104.725404.10760HepG2TIAL1
PEPDENSG00000124299.9733.11470535.652100.452603.437802.82430HepG2TRIM56
PEPDENSG00000124299.91168.40760852.218500.455104.697003.52470HepG2TUFM
PEPDENSG00000124299.9314.71390677.74920-1.106703.433102.33010HepG2U2AF2
PEPDENSG00000124299.91752.325301014.013700.7891022.4805020.86670HepG2UPF1
PEPDENSG00000124299.9702.17530978.99060-0.479506.104205.27280HepG2UTP3
PEPDENSG00000124299.9454.10320284.682900.673603.871402.56850HepG2XPO5
PEPDENSG00000124299.91177.83670740.463400.669504.397403.48980HepG2XRN2
PEPDENSG00000124299.9468.67790581.71890-0.311702.387801.75820HepG2ZC3H8
PEPDENSG00000124299.91383.576401115.221100.311004.412903.76440HepG2ZNF622
PEPDENSG00000124299.9262.07380173.441200.595403.301502.69170K562AGGF1
PEPDENSG00000124299.9192.97070382.21790-0.986006.869606.01210K562AQR
PEPDENSG00000124299.9385.71870297.556200.374302.231901.63650K562DDX47
PEPDENSG00000124299.933.6875067.58100-1.004402.327001.68630K562G3BP2
PEPDENSG00000124299.9535.77410370.597300.531702.704201.95540K562GRSF1
PEPDENSG00000124299.9186.85110268.92080-0.525302.638801.60990K562HNRNPL
PEPDENSG00000124299.9136.12320213.08770-0.646503.112401.80900K562NCBP2
PEPDENSG00000124299.9250.35330174.072600.524202.633401.85480K562POLR2G
PEPDENSG00000124299.9255.96710184.737000.470402.101501.39020K562PPIG
PEPDENSG00000124299.9101.50370160.95720-0.665102.241801.56270K562PRPF8
PEPDENSG00000124299.9577.48090420.332700.458102.820301.99620K562PUF60
PEPDENSG00000124299.9293.77580178.982500.714804.009203.37340K562PUS1
PEPDENSG00000124299.9130.69010273.01160-1.062803.770201.90830K562RBM39
PEPDENSG00000124299.9127.0655064.165600.985602.919601.88820K562RPS3
PEPDENSG00000124299.9184.33760274.09230-0.572303.378402.48190K562SF3A3
PEPDENSG00000124299.9119.41850233.02870-0.964503.154201.80860K562SNRNP200
PEPDENSG00000124299.9224.38310126.214700.830003.493102.70460K562SRSF1
PEPDENSG00000124299.9121.80010285.99780-1.231504.083901.66750K562SUGP2
PEPDENSG00000124299.914.3670067.59960-2.234307.685906.33980K562U2AF2
PEPDENSG00000124299.996.98070237.57380-1.292605.131902.71980K562XPO5
PEPDENSG00000124299.9136.88800274.31420-1.002803.567401.66570K562YTHDC2
PEPDENSG00000124299.9297.51650430.63690-0.533503.646202.62960K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PEPD is not available on ENCORE database.





1 RBPs can affect the splicing of PEPD :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXEPEPDENSG00000124299.9chr19-33984195339842433400349834003682339809013398096334012649340126970.220000.000130.019361includedHepG2UCHL5

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PEPD is not avaliable on ENCORE database.