PCNP

General Information

Gene Name : PCNP
Gene ID : ENSG00000081154.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PCNP)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PCNP	ENSG00000081154.11	95.31	79.82	87.56	ENCSR000AEF
HepG2	PCNP	ENSG00000081154.11	68.18	128.32	98.25	ENCSR985KAT
K562	PCNP	ENSG00000081154.11	89.60	106.27	97.94	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PCNP is not avaliable on ENCORE database.

Proteins bound to RNA

PCNP RNA is bound by 23 proteins.

CanvasJS.com

eCLIP assay for PCNP is not avaliable on ENCORE database.

23 proteins are bound to PCNP RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	101293044	101293124	+	5'-UTR,CDS,intron-Proximal	3.52345	26.58183	K562	ZNF622
chr3	101293059	101293123	+	5'-UTR,CDS	4.40053	23.80319	K562	UCHL5
chr3	101309057	101309105	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.00121	22.69795	K562	ZNF622
chr3	101311470	101311510	+	3'-UTR,CDS,intron-Proximal	3.87506	16.19036	K562	ZNF622
chr3	101293161	101293289	+	intron-Distal,intron-Proximal	3.52262	15.70113	HepG2	PRPF4
chr3	101311510	101311570	+	3'-UTR,CDS	3.99414	13.65107	K562	ZNF622
chr3	101312938	101313001	+	3'-UTR	3.29465	13.41338	K562	PUM2
chr3	101309072	101309104	+	3'-UTR,CDS,intron-Distal	3.05813	13.40258	K562	UCHL5
chr3	101293041	101293108	+	5'-UTR,CDS	4.12253	13.27545	HepG2	GRWD1
chr3	101309056	101309116	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.33762	12.26549	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 46 entries

eCLIP assay for PCNP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PCNP is not available on ENCORE database.
120 RBPs can affect the levels of PCNP.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PCNP is not available on ENCORE database.

120 RBPs can affect the gene expression of PCNP :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PCNP	ENSG00000081154.7	821.71480	2285.03060	-1.47550	62.13070	59.44010	HepG2	DNAJC21
PCNP	ENSG00000081154.7	1052.82530	3187.22760	-1.59800	40.40790	38.34260	HepG2	EIF2S1
PCNP	ENSG00000081154.7	2501.72380	5475.67670	-1.13010	38.13890	35.26240	K562	CPSF6
PCNP	ENSG00000081154.7	2394.94200	4147.62690	-0.79230	28.35870	24.98920	K562	EIF2S1
PCNP	ENSG00000081154.7	5344.44550	3446.53770	0.63280	23.52960	22.44490	HepG2	SRSF1
PCNP	ENSG00000081154.7	1362.29000	3731.42150	-1.45370	19.36530	17.86400	K562	HNRNPC
PCNP	ENSG00000081154.7	2532.60990	3947.08730	-0.64020	19.17050	17.82570	HepG2	ETF1
PCNP	ENSG00000081154.7	1728.24340	2578.72400	-0.57740	18.81950	17.70700	HepG2	ZNF622
PCNP	ENSG00000081154.7	3602.54800	6560.79180	-0.86490	18.77530	17.41500	K562	AQR
PCNP	ENSG00000081154.7	1621.91680	2498.97160	-0.62360	16.94850	15.71240	HepG2	TRIM56
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 151 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PCNP is not available on ENCORE database.

19 RBPs can affect the splicing of PCNP :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PCNP	ENSG00000081154.7	chr3	+	101298671	101298846	101293037	101293123	101309058	101309114	0.56600	0.00000	0.00008	included	K562	AQR
SE	PCNP	ENSG00000081154.7	chr3	+	101298432	101298610	101293029	101293123	101298685	101298848	-0.10500	0.00000	0.00008	excluded	K562	FXR1
SE	PCNP	ENSG00000081154.7	chr3	+	101298432	101298610	101293029	101293123	101298685	101298848	0.07600	0.00000	0.00013	included	K562	RBM15
A3SS	PCNP	ENSG00000081154.7	chr3	+	101309028	101309114	101309058	101309114	101304329	101304355	0.05300	0.00000	0.00000	longer	K562	AQR
SE	PCNP	ENSG00000081154.7	chr3	+	101298633	101298848	101292938	101293123	101309058	101309114	0.06600	0.00001	0.00072	included	HepG2	SRSF1
SE	PCNP	ENSG00000081154.7	chr3	+	101304280	101304355	101293037	101293123	101309058	101309114	-0.05400	0.00005	0.08444	excluded	K562	LIN28B
SE	PCNP	ENSG00000081154.7	chr3	+	101298432	101298610	101293029	101293123	101298685	101298848	-0.08900	0.00006	0.00473	excluded	K562	HNRNPK
SE	PCNP	ENSG00000081154.7	chr3	+	101298432	101298610	101293029	101293123	101298685	101298848	0.05300	0.00009	0.00417	included	K562	AGGF1
SE	PCNP	ENSG00000081154.7	chr3	+	101298633	101298848	101292938	101293123	101304280	101304355	0.05700	0.00012	0.02794	included	HepG2	TIA1
SE	PCNP	ENSG00000081154.7	chr3	+	101298432	101298610	101293029	101293123	101298685	101298848	0.08400	0.00012	0.01476	included	K562	HNRNPUL1

Showing 1 to 10 of 22 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PCNP

General Information

Functions

Localization

Domains (AlphaFold: PCNP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PCNP is not avaliable on ENCORE database.

23 proteins are bound to PCNP RNA:

eCLIP assay for PCNP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PCNP is not available on ENCORE database.

120 RBPs can affect the gene expression of PCNP :

The Knockdown/knockout RNA-Seq assay for PCNP is not available on ENCORE database.

19 RBPs can affect the splicing of PCNP :

The Knockdown/knockout RNA-Seq assay for PCNP is not avaliable on ENCORE database.