PALM

General Information

Gene Name       : PALM
Gene ID             : ENSG00000099864.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PALM)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PALMENSG00000099864.170.040.090.07ENCSR000AEF
HepG2PALMENSG00000099864.1713.193.228.21ENCSR985KAT
K562PALMENSG00000099864.172.161.171.67ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PALM is not avaliable on ENCORE database.



Proteins bound to RNA
  • PALM RNA is bound by 11 proteins.  







eCLIP assay for PALM is not avaliable on ENCORE database.





11 proteins are bound to PALM RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr19747219747363+3'-UTR5.160829.75816HepG2UPF1
chr19747338747402+3'-UTR4.578934.07810K562UPF1
chr19726990727092+CDS,intron-Proximal5.163957.06060HepG2PPIG
chr19735953736028+CDS,intron-Proximal4.019435.63851K562SF3B4
chr19731133731255+CDS,intron-Proximal3.075724.24993HepG2PPIG
chr19741564741690+intron-Distal4.018404.10323HepG2PRPF4
chr19727271727411+intron-Distal4.589164.73643HepG2DDX59
chr19742194742284+intron-Distal3.077813.00437HepG2HNRNPK
chr19737973738127+intron-Distal4.583184.35952HepG2PRPF4
chr19741554741676+intron-Distal4.027896.56790HepG2FAM120A
chr19735349735432+intron-Distal6.0149211.07188K562EIF4G2
chr19735868735928+intron-Distal,intron-Proximal4.440733.26170K562EIF4G2
chr19720964721050+intron-Distal4.090083.69819HepG2CSTF2T
chr19737084737213+intron-Distal3.673526.96229HepG2CSTF2T
chr19720660720735+intron-Distal3.997563.40229HepG2CSTF2T
chr19718846718922+intron-Distal3.032644.88713HepG2CSTF2T
chr19735080735134+intron-Distal,intron-Proximal4.572253.72755K562EIF4G2
chr19709743709888+intron-Distal5.413269.77238HepG2NKRF
chr19738782738871+intron-Distal3.716575.56645HepG2CSTF2T
chr19736196736290+intron-Distal4.960968.56618HepG2CSTF2T
chr19719966720067+intron-Distal4.147828.28918HepG2CSTF2T
chr19709888709944+intron-Distal3.969723.38470HepG2NKRF
chr19741230741275+intron-Distal4.247834.36133HepG2CSTF2T
chr19737822737911+intron-Distal3.268163.68924HepG2PRPF4
chr19737833737922+intron-Distal4.069913.37414K562CSTF2T
chr19719438719545+intron-Distal4.825126.94957HepG2CSTF2T
chr19720813720898+intron-Distal4.357184.10339HepG2CSTF2T
chr19735286735372+intron-Distal5.377753.84527K562AATF
chr19735284735349+intron-Distal5.470177.68107K562EIF4G2
chr19738898738945+intron-Distal3.836603.40229HepG2CSTF2T
chr19742210742277+intron-Distal4.025853.44758HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PALM is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PALM is not available on ENCORE database.

  • 111 RBPs can affect the levels of PALM.  








The Knockdown/knockout RNA-Seq assay for PALM is not available on ENCORE database.





111 RBPs can affect the gene expression of PALM :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PALMENSG00000099864.131115.04430547.028801.0273012.5491010.78320HepG2ABCF1
PALMENSG00000099864.13358.44660506.39160-0.498502.392001.81990HepG2ACO1
PALMENSG00000099864.13299.97580164.100600.870204.166002.96990HepG2ADAR
PALMENSG00000099864.13273.49510871.29350-1.671606.636705.85200HepG2AKAP1
PALMENSG00000099864.13638.37130506.126700.334802.063901.47790HepG2CKAP4
PALMENSG00000099864.13288.12650168.282200.775705.593204.14810HepG2YBX3
PALMENSG00000099864.13322.25480131.778901.2900010.268108.41400HepG2CSTF2
PALMENSG00000099864.13685.44080468.268500.549605.342904.23480HepG2DDX19B
PALMENSG00000099864.13796.07580484.439500.716509.571508.46720HepG2DKC1
PALMENSG00000099864.13297.40790165.242800.847806.687005.62980HepG2DNAJC21
PALMENSG00000099864.13275.71740163.780300.751305.893604.99480HepG2DNAJC2
PALMENSG00000099864.13250.43510414.88130-0.728306.022204.34750HepG2EIF2S2
PALMENSG00000099864.13146.19130283.70030-0.956502.991802.05650HepG2EIF3D
PALMENSG00000099864.131114.68620761.311100.550002.112701.55100HepG2EIF4A3
PALMENSG00000099864.13338.11380741.62710-1.133203.108602.38270HepG2EIF4B
PALMENSG00000099864.13438.68220312.054200.491302.838302.01380HepG2EIF4G2
PALMENSG00000099864.13766.87030494.697600.632303.130702.24470HepG2EWSR1
PALMENSG00000099864.13347.06860552.34370-0.670304.242703.30660HepG2FIP1L1
PALMENSG00000099864.13452.31290796.41560-0.8162010.141308.68180HepG2FUBP3
PALMENSG00000099864.13965.94800285.652401.7576022.1369020.51290HepG2GPKOW
PALMENSG00000099864.13391.52880166.825901.230702.572401.94620HepG2HNRNPA1
PALMENSG00000099864.13212.66180303.45950-0.512903.074802.09560HepG2HNRNPA2B1
PALMENSG00000099864.13591.54090185.561801.672503.466102.69560HepG2HNRNPC
PALMENSG00000099864.13474.69460237.444800.9993013.1086011.70270HepG2HNRNPF
PALMENSG00000099864.13392.02060722.52050-0.882102.868302.15630HepG2HNRNPK
PALMENSG00000099864.13490.01270272.606500.845905.420804.56910HepG2HNRNPLL
PALMENSG00000099864.13335.57250184.335100.864208.104407.10650HepG2HNRNPU
PALMENSG00000099864.13608.29860233.815201.3793022.9400021.10130HepG2IGF2BP1
PALMENSG00000099864.13282.89050188.292400.587204.249203.36000HepG2ILF2
PALMENSG00000099864.13753.79850525.963400.519102.035401.33220HepG2LARP4
PALMENSG00000099864.131055.15480773.215700.448401.931501.39950HepG2MATR3
PALMENSG00000099864.13282.88960446.92460-0.659805.012903.94890HepG2MSI2
PALMENSG00000099864.13487.66690278.100500.810204.510803.25320HepG2MTPAP
PALMENSG00000099864.13479.22120327.425900.549404.397203.43710HepG2NOL12
PALMENSG00000099864.13454.35110224.321301.018105.756303.72100HepG2NOLC1
PALMENSG00000099864.13538.20950241.743501.1546012.2655010.79930HepG2NSUN2
PALMENSG00000099864.13409.91410770.97330-0.9114015.7480014.49240HepG2PCBP1
PALMENSG00000099864.13487.88310164.412401.569107.817206.62900HepG2PPIL4
PALMENSG00000099864.13405.48970282.954100.519004.018303.10440HepG2PRPF4
PALMENSG00000099864.13468.38850784.52270-0.7441011.4330010.47020HepG2PTBP1
PALMENSG00000099864.13883.65650312.554101.4993029.5862027.91280HepG2PUF60
PALMENSG00000099864.13509.59570331.546500.620005.185704.28100HepG2PUM2
PALMENSG00000099864.13595.38520849.59660-0.513005.160104.34620HepG2QKI
PALMENSG00000099864.1389.96810262.63190-1.545602.977302.24760HepG2RAVER1
PALMENSG00000099864.13409.97630566.48510-0.466503.548302.58870HepG2RBM15
PALMENSG00000099864.13468.10810771.08650-0.720108.011906.91610HepG2RBM25
PALMENSG00000099864.13423.27660233.442700.858405.091803.64340HepG2RCC2
PALMENSG00000099864.13614.44850255.788401.264205.385204.47530HepG2RPLP0
PALMENSG00000099864.13452.58320276.116700.712803.452502.77460HepG2RPS19
PALMENSG00000099864.13397.14450265.102300.583002.929302.10740HepG2RPS2
PALMENSG00000099864.13692.76190386.522000.841702.604001.82830HepG2RPS3A
PALMENSG00000099864.13323.80810164.159200.979908.468007.43130HepG2SAFB2
PALMENSG00000099864.13480.78710269.806200.833406.922705.84750HepG2SF3B1
PALMENSG00000099864.13472.32890816.73820-0.7901012.0966010.99800HepG2SF3B4
PALMENSG00000099864.13613.86720299.684501.0344017.9673016.47300HepG2SLBP
PALMENSG00000099864.13299.86460191.438500.647304.735003.93090HepG2SMN1
PALMENSG00000099864.13191.91140300.21400-0.645602.532101.78530HepG2SNRNP70
PALMENSG00000099864.13376.64280852.51880-1.1785024.1917023.09520HepG2SRSF1
PALMENSG00000099864.13427.51690308.598100.470203.468302.78160HepG2SRSF5
PALMENSG00000099864.13475.73160233.282201.028009.932808.75560HepG2SRSF7
PALMENSG00000099864.13373.88130693.58740-0.8915014.7558013.66230HepG2SRSF9
PALMENSG00000099864.131194.89720508.034101.2338037.2427035.86250HepG2SSB
PALMENSG00000099864.13544.32280350.964100.633007.042606.12920HepG2SUCLG1
PALMENSG00000099864.13553.59580372.877800.570004.722203.50820HepG2SUPT6H
PALMENSG00000099864.13518.58290208.923301.3115010.390909.21700HepG2SUPV3L1
PALMENSG00000099864.13196.36670766.33510-1.9644029.7149028.13580HepG2TAF15
PALMENSG00000099864.13385.33040265.800700.535702.949402.20400HepG2TARDBP
PALMENSG00000099864.131309.15240179.120202.8695032.9345031.55400HepG2TIAL1
PALMENSG00000099864.13288.88760180.716900.676704.817204.11490HepG2TRIM56
PALMENSG00000099864.13609.32880305.347200.996706.523705.09620HepG2TUFM
PALMENSG00000099864.13118.12670472.43360-1.9998028.3263026.23780HepG2U2AF1
PALMENSG00000099864.13503.85310323.202000.640503.476702.53500HepG2UBE2L3
PALMENSG00000099864.13785.36380585.406400.423804.636403.77080HepG2UPF1
PALMENSG00000099864.13350.45170565.18710-0.689507.646306.73120HepG2UTP3
PALMENSG00000099864.13679.38170205.663501.7238021.5309019.59040HepG2XRN2
PALMENSG00000099864.13402.14720279.224400.526204.242603.43860HepG2ZC3H8
PALMENSG00000099864.13342.24660643.83520-0.9117015.9942014.95110HepG2ZNF622
PALMENSG00000099864.13152.1392079.905200.928903.799602.34270K562ABCF1
PALMENSG00000099864.13574.80810297.466200.9503011.2651010.21430K562AGGF1
PALMENSG00000099864.13497.50970326.911700.605704.078202.83420K562AKAP8
PALMENSG00000099864.13448.91540309.537200.536203.167502.46770K562AKAP8L
PALMENSG00000099864.13167.7547079.019201.086006.063304.62240K562BCLAF1
PALMENSG00000099864.13196.20860109.529400.841003.809802.07310K562CKAP4
PALMENSG00000099864.13123.5587067.144000.879803.070102.24510K562CPSF6
PALMENSG00000099864.13182.8299059.947801.6086010.710708.46320K562CSTF2
PALMENSG00000099864.13530.14160349.010000.603005.039503.03820K562DDX19B
PALMENSG00000099864.13255.87510176.064900.539202.689801.49790K562DDX21
PALMENSG00000099864.13114.1588069.322500.719502.739001.42670K562DDX27
PALMENSG00000099864.13132.87440202.76910-0.609802.819402.16160K562DDX47
PALMENSG00000099864.13180.4934096.853300.898004.420102.67870K562DHX30
PALMENSG00000099864.13201.66710129.378800.640303.040601.71080K562EXOSC5
PALMENSG00000099864.13110.3965057.449500.942203.322602.38780K562FIP1L1
PALMENSG00000099864.1332.05050208.02870-2.6984026.3845024.63510K562FXR1
PALMENSG00000099864.135.5613040.10110-2.850105.878004.76150K562G3BP2
PALMENSG00000099864.13116.4990064.103400.861702.813502.01220K562GPKOW
PALMENSG00000099864.13247.32270117.392001.075006.331105.18080K562GRSF1
PALMENSG00000099864.13302.13790210.313800.522602.938801.83080K562HNRNPA1
PALMENSG00000099864.1324.0409080.66750-1.746505.695903.85350K562HNRNPK
PALMENSG00000099864.13107.10710183.27040-0.774903.292002.12830K562HNRNPL
PALMENSG00000099864.13315.57630232.894400.438202.356401.53130K562HNRNPU
PALMENSG00000099864.13140.7448077.881000.853603.017402.18810K562HSPD1
PALMENSG00000099864.13164.3261080.870201.022803.114802.00360K562IGF2BP2
PALMENSG00000099864.13152.7912082.222200.893904.340302.76980K562IGF2BP3
PALMENSG00000099864.13124.81720199.74320-0.678302.828601.58580K562NCBP2
PALMENSG00000099864.13168.5722061.141801.463007.479105.18480K562NONO
PALMENSG00000099864.13353.53180218.879000.691605.962804.92640K562NSUN2
PALMENSG00000099864.13182.1820065.225101.481809.804607.99600K562PPIG
PALMENSG00000099864.1370.24730185.95630-1.404404.532402.18230K562PRPF6
PALMENSG00000099864.1311.3175060.24470-2.412303.136802.33760K562PRPF8
PALMENSG00000099864.13215.4940095.370101.175905.665904.29870K562PSIP1
PALMENSG00000099864.13135.17990240.77600-0.832802.961502.11610K562PUF60
PALMENSG00000099864.13403.62610250.923900.685703.695302.58390K562PUM2
PALMENSG00000099864.13177.3020092.300200.941703.920001.61260K562RBFOX2
PALMENSG00000099864.13391.55090299.091300.388502.425601.86390K562RBM15
PALMENSG00000099864.1341.05950112.46550-1.453705.818804.25240K562SAFB
PALMENSG00000099864.13260.95950138.508400.913804.115102.15950K562SBDS
PALMENSG00000099864.13157.8147095.259600.728202.976101.66140K562SLBP
PALMENSG00000099864.13128.8843060.214301.097803.931101.93970K562SRP68
PALMENSG00000099864.13196.0330094.386901.054305.229603.70000K562SRSF4
PALMENSG00000099864.13168.7094076.414401.142506.376704.67270K562SRSF5
PALMENSG00000099864.1330.00860126.61100-2.0770011.7811010.09200K562SYNCRIP
PALMENSG00000099864.13181.3122081.842301.147505.498404.48330K562TARDBP
PALMENSG00000099864.13230.8616078.951501.5479012.7958010.91050K562TIA1
PALMENSG00000099864.13252.8245091.714701.462809.231807.44870K562TIAL1
PALMENSG00000099864.13144.4876077.522600.898203.587202.31200K562TRA2A
PALMENSG00000099864.13152.3059067.171601.180905.631203.52330K562TRIP6
PALMENSG00000099864.13155.2498061.692801.331304.969003.56010K562UCHL5
PALMENSG00000099864.1383.15170175.20160-1.075204.226102.16830K562XRCC6
PALMENSG00000099864.13144.1453062.880201.196705.042403.23000K562XRN2
PALMENSG00000099864.13346.80190219.393000.660502.595501.76480K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PALM is not available on ENCORE database.





2 RBPs can affect the splicing of PALM :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPALMENSG00000099864.13chr19+7403517404837360187360787462847483290.294000.002250.09524includedHepG2PTBP1
SEPALMENSG00000099864.13chr19+7403517404837360187360787462847483290.339000.003930.07403includedHepG2SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PALM is not avaliable on ENCORE database.