NPAS2

General Information

Gene Name : NPAS2
Gene ID : ENSG00000170485.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NPAS2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NPAS2	ENSG00000170485.16	0.00	0.00	0.00	ENCSR000AEF
HepG2	NPAS2	ENSG00000170485.16	38.92	22.64	30.78	ENCSR985KAT
K562	NPAS2	ENSG00000170485.16	0.00	0.05	0.03	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NPAS2 is not avaliable on ENCORE database.

Proteins bound to RNA

NPAS2 RNA is bound by 53 proteins.

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eCLIP assay for NPAS2 is not avaliable on ENCORE database.

53 proteins are bound to NPAS2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	101458434	101458450	+	intron-Distal	5.50345	400.00000	HepG2	HNRNPL
chr2	101458463	101458470	+	intron-Distal	6.00087	400.00000	HepG2	HNRNPL
chr2	101458472	101458482	+	intron-Distal	5.89863	400.00000	HepG2	HNRNPL
chr2	101458482	101458488	+	intron-Distal	5.81339	400.00000	HepG2	HNRNPL
chr2	101458152	101458164	+	intron-Distal	5.78639	400.00000	HepG2	HNRNPL
chr2	101458456	101458463	+	intron-Distal	5.60680	400.00000	HepG2	HNRNPL
chr2	101458450	101458454	+	intron-Distal	5.52360	400.00000	HepG2	HNRNPL
chr2	101458286	101458297	+	intron-Distal	5.87220	400.00000	HepG2	HNRNPL
chr2	101458195	101458200	+	intron-Distal	5.86847	400.00000	HepG2	HNRNPL
chr2	101458454	101458456	+	intron-Distal	5.57180	400.00000	HepG2	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 282 entries

eCLIP assay for NPAS2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NPAS2 is not available on ENCORE database.
100 RBPs can affect the levels of NPAS2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NPAS2 is not available on ENCORE database.

100 RBPs can affect the gene expression of NPAS2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NPAS2	ENSG00000170485.12	4762.32560	1893.86610	1.33020	51.74730	49.93650	HepG2	ACO1
NPAS2	ENSG00000170485.12	3025.05530	1078.72690	1.48750	30.01440	28.30900	HepG2	DDX6
NPAS2	ENSG00000170485.12	2038.32920	1025.08400	0.99150	27.83780	26.43320	HepG2	SRSF9
NPAS2	ENSG00000170485.12	1271.63050	2249.81680	-0.82310	26.84790	25.62000	HepG2	SSB
NPAS2	ENSG00000170485.12	973.07890	1811.90470	-0.89690	25.81960	24.27200	HepG2	DKC1
NPAS2	ENSG00000170485.12	2236.67360	1206.96830	0.88990	19.70590	18.36100	HepG2	SF3B4
NPAS2	ENSG00000170485.12	3616.90950	1212.12660	1.57710	19.44160	17.73560	HepG2	RAVER1
NPAS2	ENSG00000170485.12	2184.97210	1159.51060	0.91400	17.77660	16.61880	HepG2	PTBP1
NPAS2	ENSG00000170485.12	2662.76500	1724.05960	0.62700	14.94370	13.68370	HepG2	CELF1
NPAS2	ENSG00000170485.12	2484.91780	1115.55980	1.15530	14.62540	13.11760	HepG2	EIF4B
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 102 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NPAS2 is not available on ENCORE database.

11 RBPs can affect the splicing of NPAS2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	NPAS2	ENSG00000170485.12	chr2	+	101585012	101585178			101584742	101584890	101587451	101587511	0.18000	0.00000	0.00003	included	HepG2	HNRNPK
SE	NPAS2	ENSG00000170485.12	chr2	+	101565828	101565942			101564696	101564817	101580519	101580638	-0.11000	0.00004	0.00227	excluded	HepG2	SF3A3
MXE	NPAS2	ENSG00000170485.12	chr2	+	101606855	101606908	101607241	101607334	101604540	101604738	101609808	101609989	-0.23500	0.00005	0.00575	2included	HepG2	BCCIP
MXE	NPAS2	ENSG00000170485.12	chr2	+	101607241	101607334	101609808	101609989	101606717	101606908	101611861	101612517	-0.17500	0.00009	0.01343	2included	HepG2	DDX59
RI	NPAS2	ENSG00000170485.12	chr2	+	101598692	101604738			101598692	101598839	101604540	101604738	0.29900	0.00033	0.00355	included	HepG2	U2AF2
MXE	NPAS2	ENSG00000170485.12	chr2	+	101549371	101549463	101554214	101554304	101541607	101541756	101564696	101564761	-0.12900	0.00060	0.00526	2included	HepG2	U2AF2
SE	NPAS2	ENSG00000170485.12	chr2	+	101607241	101607334			101606717	101606908	101609808	101609989	-0.10900	0.00069	0.04519	excluded	HepG2	FTO
MXE	NPAS2	ENSG00000170485.12	chr2	+	101606717	101606908	101607241	101607334	101604540	101604738	101609808	101609989	-0.25000	0.00071	0.03679	2included	HepG2	BCCIP
MXE	NPAS2	ENSG00000170485.12	chr2	+	101549371	101549463	101554214	101554304	101541607	101541756	101564696	101564761	-0.13500	0.00091	0.01471	2included	HepG2	SFPQ
A3SS	NPAS2	ENSG00000170485.12	chr2	+	101611861	101612517			101612257	101612517	101609808	101609989	0.11800	0.00099	0.03978	longer	HepG2	U2AF1

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NPAS2

General Information

Functions

Localization

Domains (AlphaFold: NPAS2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NPAS2 is not avaliable on ENCORE database.

53 proteins are bound to NPAS2 RNA:

eCLIP assay for NPAS2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NPAS2 is not available on ENCORE database.

100 RBPs can affect the gene expression of NPAS2 :

The Knockdown/knockout RNA-Seq assay for NPAS2 is not available on ENCORE database.

11 RBPs can affect the splicing of NPAS2 :

The Knockdown/knockout RNA-Seq assay for NPAS2 is not avaliable on ENCORE database.