LIG1

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LIG1	ENSG00000105486.13	30.18	48.17	39.17	ENCSR000AEF
HepG2	LIG1	ENSG00000105486.13	87.41	61.52	74.47	ENCSR985KAT
K562	LIG1	ENSG00000105486.13	54.79	47.84	51.31	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LIG1 is not avaliable on ENCORE database.

Proteins bound to RNA

LIG1 RNA is bound by 27 proteins.

eCLIP assay for LIG1 is not avaliable on ENCORE database.

27 proteins are bound to LIG1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	48640306	48640331	-	3'-UTR,CDS,intron-Distal	3.30800	4.19763	K562	DDX24
chr19	48618733	48618843	-	3'-UTR,intron-Distal,intron-Proximal	4.01872	8.40551	K562	NOLC1
chr19	48624382	48624407	-	3'-UTR,intron-Distal,intron-Proximal	6.37319	54.47238	K562	AQR
chr19	48618724	48618807	-	3'-UTR,intron-Distal,intron-Proximal	5.84418	61.90633	HepG2	SUB1
chr19	48640264	48640320	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.52990	5.08732	HepG2	PPIG
chr19	48668815	48668835	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.64744	3.86355	HepG2	PPIG
chr19	48624233	48624275	-	3'-UTR,intron-Distal	3.23834	3.18246	K562	PRPF8
chr19	48618733	48618828	-	3'-UTR,intron-Distal,intron-Proximal	4.54992	5.91082	K562	ZC3H11A
chr19	48623544	48623615	-	3'-UTR,intron-Distal	5.05915	22.38149	K562	AQR
chr19	48668806	48668853	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.79036	9.99051	K562	UCHL5
chr19	48668806	48668868	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.24256	11.20513	K562	ZNF622
chr19	48622401	48622469	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.14582	11.42662	K562	AQR
chr19	48623564	48623649	-	3'-UTR,intron-Distal	4.51816	4.36029	K562	GPKOW
chr19	48631203	48631260	-	3'-UTR,CDS,intron-Distal	3.73546	10.53208	K562	UCHL5
chr19	48639302	48639385	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.68838	5.76079	K562	FXR2
chr19	48640220	48640271	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.38432	3.18415	HepG2	PRPF8
chr19	48631261	48631277	-	3'-UTR,CDS,intron-Distal	3.12815	4.56310	K562	ZNF622
chr19	48639343	48639380	-	3'-UTR,CDS,intron-Distal	3.53970	5.21950	K562	DDX24
chr19	48668874	48668880	-	3'-UTR,5'-UTR,intron-Distal	4.01043	6.29174	K562	ZNF622
chr19	48618727	48618786	-	3'-UTR,intron-Distal,intron-Proximal	5.10828	13.91354	K562	PABPC4
chr19	48631218	48631249	-	3'-UTR,CDS,intron-Distal	3.02390	4.94718	HepG2	PPIG
chr19	48618724	48618796	-	3'-UTR,intron-Distal,intron-Proximal	4.23760	9.04919	K562	DDX6
chr19	48624407	48624421	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.68137	53.05825	K562	AQR
chr19	48668806	48668842	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.45585	3.79347	HepG2	GRWD1
chr19	48631202	48631274	-	3'-UTR,CDS,intron-Distal	3.11387	3.47996	HepG2	GRWD1
chr19	48622426	48622472	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.41488	4.83899	HepG2	PRPF8
chr19	48622408	48622474	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.57499	4.97857	HepG2	AQR
chr19	48631238	48631277	-	3'-UTR,CDS,intron-Distal	3.30389	8.67013	K562	DDX24
chr19	48622414	48622444	-	3'-UTR,CDS,intron-Distal	3.74964	5.29272	K562	BUD13
chr19	48626475	48626498	-	3'-UTR,CDS,intron-Distal	3.45030	4.06757	K562	UCHL5
chr19	48624324	48624372	-	3'-UTR,intron-Distal,intron-Proximal	4.48985	12.08528	K562	AQR
chr19	48624429	48624576	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.87029	5.05521	HepG2	PABPN1
chr19	48622369	48622401	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.86955	11.25363	K562	AQR
chr19	48624373	48624439	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.18223	8.85649	K562	DDX24
chr19	48624448	48624567	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.56154	10.12338	HepG2	PPIG
chr19	48639300	48639382	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.38441	8.06634	HepG2	PPIG
chr19	48621029	48621057	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.20636	6.83960	K562	AQR
chr19	48639330	48639376	-	3'-UTR,CDS,intron-Distal	3.84878	3.56019	HepG2	GRWD1
chr19	48624382	48624428	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.28862	15.84669	HepG2	PRPF8
chr19	48623554	48623613	-	3'-UTR,intron-Distal	3.20443	5.25094	K562	PRPF8
chr19	48624398	48624412	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.15995	8.56980	HepG2	AQR
chr19	48622351	48622426	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.72622	9.43475	HepG2	PRPF8
chr19	48618724	48618811	-	3'-UTR,intron-Distal,intron-Proximal	3.23385	3.84295	HepG2	LSM11
chr19	48624372	48624382	-	3'-UTR,intron-Distal,intron-Proximal	4.10216	6.80869	K562	AQR
chr19	48634331	48634422	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.16434	13.95379	K562	UCHL5
chr19	48636241	48636293	-	5'-UTR,CDS,intron-Distal	3.08181	5.10726	K562	UCHL5
chr19	48673512	48673539	-	5'-UTR,intron-Distal,intron-Proximal	3.48839	6.78413	K562	ZNF622
chr19	48673462	48673516	-	5'-UTR,intron-Distal,intron-Proximal	4.28572	4.27476	HepG2	AQR
chr19	48634338	48634390	-	5'-UTR,CDS,intron-Distal	4.11436	10.07582	K562	ZNF622
chr19	48673498	48673512	-	5'-UTR,intron-Distal,intron-Proximal	3.83430	7.95479	K562	ZNF622
chr19	48634332	48634399	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.55586	9.16725	K562	DDX24
chr19	48637314	48637359	-	CDS,intron-Distal,intron-Proximal	4.44556	8.01338	K562	AQR
chr19	48646800	48646864	-	CDS,intron-Distal,intron-Proximal	3.86495	11.88582	K562	BUD13
chr19	48647141	48647217	-	CDS,intron-Distal	4.11016	8.80635	K562	ZNF800
chr19	48647092	48647142	-	CDS,intron-Distal,intron-Proximal	3.03410	3.79215	HepG2	PRPF8
chr19	48660378	48660396	-	CDS,intron-Distal	3.88441	4.41267	HepG2	PPIG
chr19	48647140	48647177	-	CDS,intron-Distal	4.20579	9.74809	K562	ZNF622
chr19	48640735	48640785	-	CDS,intron-Distal,intron-Proximal	5.17767	5.01842	HepG2	PRPF8
chr19	48643269	48643316	-	CDS,intron-Distal	3.85521	8.37042	K562	ZNF622
chr19	48643344	48643401	-	CDS,intron-Distal,intron-Proximal	3.37914	6.32494	K562	UCHL5
chr19	48640326	48640399	-	CDS,intron-Distal,intron-Proximal	6.23555	13.26581	K562	SF3B4
chr19	48646804	48646854	-	CDS,intron-Distal	4.49131	5.13243	HepG2	GRWD1
chr19	48636314	48636403	-	CDS,intron-Distal,intron-Proximal	3.02153	4.19169	K562	SF3B4
chr19	48653016	48653057	-	CDS,intron-Distal,intron-Proximal	3.20648	4.93055	K562	ZNF800
chr19	48647177	48647204	-	CDS,intron-Distal	3.88707	6.74842	K562	ZNF622
chr19	48665551	48665608	-	CDS,intron-Distal	5.53440	9.91534	HepG2	GRWD1
chr19	48654521	48654598	-	CDS,intron-Distal,intron-Proximal	3.56501	9.36208	K562	UCHL5
chr19	48624412	48624428	-	CDS,intron-Distal,intron-Proximal	5.13273	8.52745	HepG2	AQR
chr19	48665519	48665547	-	CDS,intron-Distal,intron-Proximal	3.95574	5.42720	K562	UCHL5
chr19	48646821	48646864	-	CDS,intron-Distal,intron-Proximal	3.48456	6.87160	K562	AQR
chr19	48654582	48654617	-	CDS,intron-Distal,intron-Proximal	3.95876	3.25089	HepG2	AQR
chr19	48639251	48639295	-	CDS,intron-Distal,intron-Proximal	4.08345	4.16174	HepG2	PRPF8
chr19	48647138	48647187	-	CDS,intron-Distal,intron-Proximal	4.13566	8.74774	HepG2	PPIG
chr19	48665518	48665551	-	CDS,intron-Distal,intron-Proximal	4.48307	4.21087	HepG2	GRWD1
chr19	48657129	48657180	-	CDS,intron-Distal,intron-Proximal	3.53526	6.62505	K562	UCHL5
chr19	48665519	48665553	-	CDS,intron-Distal,intron-Proximal	3.63540	6.25299	K562	ZNF622
chr19	48647139	48647208	-	CDS,intron-Distal,intron-Proximal	3.40049	8.03987	K562	BUD13
chr19	48647183	48647216	-	CDS,intron-Distal	4.21504	4.01763	HepG2	GRWD1
chr19	48624421	48624427	-	CDS,intron-Distal,intron-Proximal	6.62255	51.42422	K562	AQR
chr19	48664628	48664649	-	CDS,intron-Distal,intron-Proximal	3.37408	7.08969	K562	ZNF622
chr19	48643228	48643269	-	CDS,intron-Distal	3.20047	6.46814	K562	ZNF622
chr19	48640895	48640943	-	CDS,intron-Distal	3.94584	6.70085	HepG2	PPIG
chr19	48665585	48665607	-	CDS,intron-Distal	3.50856	9.10235	K562	UCHL5
chr19	48646798	48646854	-	CDS,intron-Distal,intron-Proximal	4.27996	12.59726	HepG2	PPIG
chr19	48643376	48643400	-	CDS,intron-Distal	4.00606	7.83545	HepG2	PPIG
chr19	48664663	48664764	-	CDS,intron-Distal,intron-Proximal	3.39421	3.78642	HepG2	GRWD1
chr19	48646798	48646841	-	CDS,intron-Distal,intron-Proximal	3.10048	7.90354	K562	DDX24
chr19	48664706	48664761	-	CDS,intron-Distal	4.73191	11.59798	HepG2	PPIG
chr19	48657199	48657246	-	CDS,intron-Distal,intron-Proximal	5.62613	8.34710	K562	AQR
chr19	48664666	48664758	-	CDS,intron-Distal,intron-Proximal	3.76761	13.05803	K562	UCHL5
chr19	48653401	48653466	-	CDS,intron-Distal	3.11197	3.66602	K562	GRWD1
chr19	48665563	48665583	-	CDS,intron-Distal	3.60578	8.82426	K562	ZNF622
chr19	48664697	48664740	-	CDS,intron-Distal	5.23573	5.74423	HepG2	BUD13
chr19	48647139	48647183	-	CDS,intron-Distal,intron-Proximal	3.48030	3.80299	HepG2	GRWD1
chr19	48640893	48640939	-	CDS,intron-Distal	4.03031	3.12746	HepG2	GRWD1
chr19	48664688	48664764	-	CDS,intron-Distal,intron-Proximal	4.22611	15.62408	K562	ZNF622
chr19	48657134	48657175	-	CDS,intron-Distal,intron-Proximal	3.05360	6.45823	K562	ZNF622
chr19	48660372	48660397	-	CDS,intron-Distal	3.61250	6.14048	K562	ZNF622
chr19	48647144	48647206	-	CDS,intron-Distal	3.79715	9.45444	K562	UCHL5
chr19	48664666	48664762	-	CDS,intron-Distal,intron-Proximal	3.23412	7.08636	K562	GRWD1
chr19	48665583	48665608	-	CDS,intron-Distal	3.37262	7.87286	K562	ZNF622
chr19	48643385	48643403	-	CDS,intron-Distal,intron-Proximal	4.74523	5.64870	K562	DDX24
chr19	48643221	48643270	-	CDS,intron-Distal,intron-Proximal	4.33206	7.79455	HepG2	PPIG
chr19	48665547	48665585	-	CDS,intron-Distal	4.22822	10.92483	K562	UCHL5
chr19	48657149	48657194	-	CDS,intron-Distal,intron-Proximal	3.87093	5.30777	HepG2	PPIG
chr19	48621112	48621233	-	intron-Distal,intron-Proximal	4.66136	5.31323	HepG2	PTBP1
chr19	48637197	48637234	-	intron-Distal,intron-Proximal	3.44520	3.94787	K562	AQR
chr19	48642831	48642960	-	intron-Distal	4.88692	6.11395	HepG2	GTF2F1
chr19	48642885	48642969	-	intron-Distal	3.99562	5.99968	K562	PRPF8
chr19	48622351	48622369	-	intron-Distal,intron-Proximal	5.54985	9.63974	K562	AQR
chr19	48621112	48621259	-	intron-Distal,intron-Proximal	5.41528	6.90462	K562	PTBP1
chr19	48660155	48660202	-	intron-Distal,intron-Proximal	4.91611	5.69951	K562	AQR
chr19	48621272	48621333	-	intron-Distal	4.81708	5.39854	K562	PTBP1
chr19	48622447	48622495	-	intron-Distal,intron-Proximal	4.63795	4.22551	K562	SF3B4
chr19	48656842	48656916	-	intron-Distal	5.82438	19.22721	K562	EIF4G2
chr19	48638811	48638906	-	intron-Distal,intron-Proximal	3.49660	10.15932	K562	AQR
chr19	48656832	48656920	-	intron-Distal	4.45836	4.66266	K562	TARDBP
chr19	48642565	48642641	-	intron-Distal	3.58273	6.32494	K562	UCHL5
chr19	48642571	48642680	-	intron-Distal	4.25222	3.06537	K562	RBFOX2
chr19	48642872	48642926	-	intron-Distal	4.19893	5.51270	K562	GTF2F1
chr19	48642834	48642856	-	intron-Distal	5.07828	4.48364	K562	DDX24
chr19	48642667	48642712	-	intron-Distal	4.82920	5.86954	K562	UCHL5
chr19	48638827	48638894	-	intron-Distal,intron-Proximal	5.60660	5.16714	HepG2	EFTUD2
chr19	48642886	48642991	-	intron-Distal	4.36395	4.33898	HepG2	FAM120A
chr19	48630441	48630517	-	intron-Distal,intron-Proximal	4.79490	4.02817	HepG2	PRPF8
chr19	48642926	48642978	-	intron-Distal	5.13411	7.03699	K562	GTF2F1
chr19	48657004	48657072	-	intron-Distal,intron-Proximal	5.68665	9.79541	K562	EIF4G2
chr19	48642824	48642942	-	intron-Distal	4.20642	4.49655	K562	CSTF2T
chr19	48647090	48647132	-	intron-Distal,intron-Proximal	3.53364	4.88100	K562	AQR
chr19	48621333	48621447	-	intron-Distal	3.40204	6.26469	K562	PTBP1
chr19	48642826	48642875	-	intron-Distal	3.88892	5.85201	K562	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for LIG1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LIG1 is not available on ENCORE database.
122 RBPs can affect the levels of LIG1.

The Knockdown/knockout RNA-Seq assay for LIG1 is not available on ENCORE database.

122 RBPs can affect the gene expression of LIG1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LIG1	ENSG00000105486.9	480.04420	726.83860	-0.59850	5.29830	3.85210	HepG2	AATF
LIG1	ENSG00000105486.9	1513.81040	1177.12170	0.36280	2.44190	1.55710	HepG2	ABCF1
LIG1	ENSG00000105486.9	955.96590	1130.77840	-0.24230	2.37380	1.80360	HepG2	ACO1
LIG1	ENSG00000105486.9	420.91730	665.59970	-0.66110	4.47120	3.81650	HepG2	AKAP1
LIG1	ENSG00000105486.9	404.98350	550.70910	-0.44340	2.48460	1.73740	HepG2	ASCC1
LIG1	ENSG00000105486.9	893.04600	1447.05940	-0.69630	13.98810	12.65540	HepG2	AUH
LIG1	ENSG00000105486.9	451.58430	767.07200	-0.76440	3.99360	2.93110	HepG2	BCLAF1
LIG1	ENSG00000105486.9	635.23310	842.90510	-0.40810	3.02600	2.40320	HepG2	BOP1
LIG1	ENSG00000105486.9	312.04900	844.08650	-1.43560	28.54680	26.60630	HepG2	CALR
LIG1	ENSG00000105486.9	911.42530	1197.18290	-0.39340	2.17260	1.31700	HepG2	CCAR1
LIG1	ENSG00000105486.9	717.57720	1130.36990	-0.65560	12.55050	11.33970	HepG2	CKAP4
LIG1	ENSG00000105486.9	544.73780	773.80400	-0.50640	3.94040	3.13350	HepG2	CPSF6
LIG1	ENSG00000105486.9	611.51900	969.33600	-0.66460	7.79580	6.03110	HepG2	CPSF7
LIG1	ENSG00000105486.9	805.67940	545.18600	0.56340	4.18210	2.89040	HepG2	CSTF2
LIG1	ENSG00000105486.9	505.10780	744.23690	-0.55920	3.34920	1.80430	HepG2	CSTF2T
LIG1	ENSG00000105486.9	733.13270	1185.46330	-0.69330	11.97080	10.81290	HepG2	CELF1
LIG1	ENSG00000105486.9	993.40790	1274.56240	-0.35950	4.93130	3.98250	HepG2	DAZAP1
LIG1	ENSG00000105486.9	531.92090	784.73010	-0.56100	5.42200	4.13750	HepG2	DDX24
LIG1	ENSG00000105486.9	346.98600	637.55380	-0.87770	8.03010	7.01360	HepG2	DDX3X
LIG1	ENSG00000105486.9	234.98940	336.81590	-0.51940	2.85010	1.54010	HepG2	DDX47
LIG1	ENSG00000105486.9	538.17200	868.20250	-0.69000	3.28650	2.45400	HepG2	DDX55
LIG1	ENSG00000105486.9	386.66790	878.72080	-1.18430	9.17810	7.46300	HepG2	DDX59
LIG1	ENSG00000105486.9	250.19610	547.76700	-1.13050	10.45020	9.33300	HepG2	DDX6
LIG1	ENSG00000105486.9	439.57260	573.24200	-0.38300	2.37650	1.46800	HepG2	DHX30
LIG1	ENSG00000105486.9	411.00350	594.33480	-0.53210	5.02010	4.09760	HepG2	DNAJC21
LIG1	ENSG00000105486.9	441.53220	589.11460	-0.41600	4.07850	3.31780	HepG2	DNAJC2
LIG1	ENSG00000105486.9	284.64020	738.43380	-1.37530	16.44560	14.00110	HepG2	AGO1
LIG1	ENSG00000105486.9	301.62650	526.48730	-0.80360	6.30470	5.42840	HepG2	EIF2S1
LIG1	ENSG00000105486.9	292.34770	648.12420	-1.14860	12.90810	11.11310	HepG2	EIF3D
LIG1	ENSG00000105486.9	225.60500	375.20930	-0.73390	4.22060	1.98220	HepG2	EIF3H
LIG1	ENSG00000105486.9	988.41320	581.78470	0.76450	7.02810	6.00980	HepG2	EIF4A3
LIG1	ENSG00000105486.9	827.84860	1257.52170	-0.60310	9.83730	8.44800	HepG2	EIF4G1
LIG1	ENSG00000105486.9	815.03770	1204.60960	-0.56360	5.50660	4.37900	HepG2	EIF4G2
LIG1	ENSG00000105486.9	1111.76790	1661.43190	-0.57960	11.69240	10.59650	HepG2	ETF1
LIG1	ENSG00000105486.9	457.38190	764.15730	-0.74050	8.47580	6.68260	HepG2	FASTKD2
LIG1	ENSG00000105486.9	728.41840	1188.59970	-0.70640	6.38150	5.25910	HepG2	FIP1L1
LIG1	ENSG00000105486.9	458.29880	775.19030	-0.75830	2.95130	1.90060	HepG2	FTO
LIG1	ENSG00000105486.9	1235.77890	587.13460	1.07360	15.36600	13.87570	HepG2	FXR1
LIG1	ENSG00000105486.9	853.56140	578.23720	0.56170	4.46890	3.32450	HepG2	G3BP2
LIG1	ENSG00000105486.9	643.66690	877.08810	-0.44640	2.90130	2.24690	HepG2	GPKOW
LIG1	ENSG00000105486.9	794.63760	1079.47090	-0.44200	4.41720	3.20220	HepG2	HDGF
LIG1	ENSG00000105486.9	436.52180	835.20780	-0.93610	5.80940	3.72440	HepG2	HLTF
LIG1	ENSG00000105486.9	653.22760	1171.40850	-0.84260	17.19350	15.26290	HepG2	HNRNPA2B1
LIG1	ENSG00000105486.9	927.80900	667.43060	0.47510	3.92290	3.10780	HepG2	HNRNPC
LIG1	ENSG00000105486.9	789.62180	1000.19110	-0.34100	2.32380	1.66250	HepG2	HNRNPF
LIG1	ENSG00000105486.9	1049.26180	551.60700	0.92760	12.22330	10.85670	HepG2	HNRNPK
LIG1	ENSG00000105486.9	800.60380	1160.99800	-0.53620	9.27830	8.11220	HepG2	HNRNPL
LIG1	ENSG00000105486.9	516.05490	837.02840	-0.69780	6.56010	5.63600	HepG2	HNRNPLL
LIG1	ENSG00000105486.9	1117.19260	587.34020	0.92750	11.20260	9.91250	HepG2	MAGOH
LIG1	ENSG00000105486.9	855.83200	590.60500	0.53500	3.59890	2.88760	HepG2	MATR3
LIG1	ENSG00000105486.9	382.69580	678.28380	-0.82570	4.45640	3.13980	HepG2	METAP2
LIG1	ENSG00000105486.9	592.36800	961.92770	-0.69940	8.53000	7.17920	HepG2	MSI2
LIG1	ENSG00000105486.9	822.03550	604.49870	0.44340	2.79470	2.15870	HepG2	NCBP2
LIG1	ENSG00000105486.9	365.32060	538.26160	-0.55910	3.56430	2.75080	HepG2	PABPC4
LIG1	ENSG00000105486.9	480.03070	656.26200	-0.45110	4.30810	3.27990	HepG2	PARN
LIG1	ENSG00000105486.9	529.82820	823.94720	-0.63700	3.92350	2.69450	HepG2	PCBP2
LIG1	ENSG00000105486.9	742.72710	591.35680	0.32870	2.63630	1.91580	HepG2	PPIL4
LIG1	ENSG00000105486.9	748.44380	890.06890	-0.25000	1.98080	1.31850	HepG2	PRPF4
LIG1	ENSG00000105486.9	337.05050	669.34090	-0.98980	6.87540	5.66730	HepG2	PRPF8
LIG1	ENSG00000105486.9	667.51280	1206.49210	-0.85400	12.90180	11.74270	HepG2	PUF60
LIG1	ENSG00000105486.9	999.34800	1280.77760	-0.35800	4.99850	4.24890	HepG2	PUM1
LIG1	ENSG00000105486.9	942.89040	1279.82160	-0.44080	4.68940	3.82750	HepG2	PUM2
LIG1	ENSG00000105486.9	558.99290	686.39010	-0.29620	1.83530	1.31060	HepG2	QKI
LIG1	ENSG00000105486.9	252.72380	794.90970	-1.65320	15.65160	14.11040	HepG2	RAVER1
LIG1	ENSG00000105486.9	629.20860	1298.46440	-1.04520	11.14120	9.59910	HepG2	RBM15
LIG1	ENSG00000105486.9	557.31270	1388.64670	-1.31710	38.25870	36.76820	HepG2	RBM22
LIG1	ENSG00000105486.9	1420.76110	705.36640	1.01010	26.35130	25.02910	HepG2	NELFE
LIG1	ENSG00000105486.9	1164.58490	656.99700	0.82580	6.69690	5.79790	HepG2	RECQL
LIG1	ENSG00000105486.9	556.91610	1077.62280	-0.95230	14.57020	13.23640	HepG2	RPLP0
LIG1	ENSG00000105486.9	456.06280	781.24240	-0.77650	5.25050	3.97270	HepG2	RPS10
LIG1	ENSG00000105486.9	341.50750	221.17930	0.62660	2.52980	1.76390	HepG2	RPS3A
LIG1	ENSG00000105486.9	241.67920	662.07670	-1.45390	11.84110	10.39420	HepG2	RRP9
LIG1	ENSG00000105486.9	370.68020	828.44720	-1.16020	10.73380	9.42820	HepG2	SF3B1
LIG1	ENSG00000105486.9	433.69990	921.80910	-1.08780	8.48380	7.11850	HepG2	SNRNP70
LIG1	ENSG00000105486.9	463.83130	1568.42020	-1.75760	79.96450	78.23340	HepG2	SRFBP1
LIG1	ENSG00000105486.9	1230.37910	688.75700	0.83690	18.26590	17.27610	HepG2	SRSF1
LIG1	ENSG00000105486.9	748.87980	982.69440	-0.39200	4.84820	3.96680	HepG2	SRSF7
LIG1	ENSG00000105486.9	188.39740	560.35900	-1.57260	31.06580	29.60240	HepG2	SRSF9
LIG1	ENSG00000105486.9	537.16410	793.86250	-0.56350	4.07830	2.60160	HepG2	STAU1
LIG1	ENSG00000105486.9	298.81120	742.92170	-1.31400	12.25830	9.90210	HepG2	SUB1
LIG1	ENSG00000105486.9	257.37470	392.34770	-0.60830	3.12020	1.70740	HepG2	SUGP2
LIG1	ENSG00000105486.9	598.38410	802.55900	-0.42350	3.28540	2.26660	HepG2	SUPT6H
LIG1	ENSG00000105486.9	489.85680	864.16420	-0.81890	4.40050	3.57660	HepG2	SUPV3L1
LIG1	ENSG00000105486.9	834.55040	619.14100	0.43060	4.44690	3.76170	HepG2	TAF15
LIG1	ENSG00000105486.9	396.08260	816.05310	-1.04290	10.22960	8.96360	HepG2	TARDBP
LIG1	ENSG00000105486.9	858.81720	380.74740	1.17340	7.00840	5.39500	HepG2	TBRG4
LIG1	ENSG00000105486.9	284.25170	579.14700	-1.02680	6.72610	5.29110	HepG2	TFIP11
LIG1	ENSG00000105486.9	1057.88550	644.21040	0.71550	10.54550	9.67880	HepG2	TIAL1
LIG1	ENSG00000105486.9	424.07840	650.00650	-0.61610	7.61090	6.75240	HepG2	TRIM56
LIG1	ENSG00000105486.9	705.13970	1016.74300	-0.52800	4.34830	3.56980	HepG2	U2AF1
LIG1	ENSG00000105486.9	837.15870	1247.71900	-0.57570	4.31010	3.25220	HepG2	UBE2L3
LIG1	ENSG00000105486.9	653.73990	1172.13040	-0.84230	19.35320	17.82990	HepG2	UPF1
LIG1	ENSG00000105486.9	789.55790	1204.79230	-0.60970	9.92790	8.09400	HepG2	UTP18
LIG1	ENSG00000105486.9	607.94920	1131.64710	-0.89640	19.79340	18.40840	HepG2	UTP3
LIG1	ENSG00000105486.9	1268.81080	850.67840	0.57670	4.16040	3.27920	HepG2	XRN2
LIG1	ENSG00000105486.9	304.45190	1289.12030	-2.08210	104.01190	101.98790	HepG2	ZNF622
LIG1	ENSG00000105486.9	3910.90950	2650.14550	0.56130	9.04070	8.09120	K562	AGGF1
LIG1	ENSG00000105486.9	3505.03800	2757.65960	0.34590	3.00180	2.32040	K562	AKAP8L
LIG1	ENSG00000105486.9	1178.77940	2762.74630	-1.22880	27.62990	25.97610	K562	AQR
LIG1	ENSG00000105486.9	1475.58230	2507.92370	-0.76520	5.39990	3.85550	K562	CNOT7
LIG1	ENSG00000105486.9	874.10160	1138.08610	-0.38070	3.27710	2.42120	K562	CPSF6
LIG1	ENSG00000105486.9	3313.01010	4328.50910	-0.38570	6.04740	4.61300	K562	CELF1
LIG1	ENSG00000105486.9	1712.85130	2527.08090	-0.56110	12.95940	11.65890	K562	DDX47
LIG1	ENSG00000105486.9	807.63730	1247.00370	-0.62670	6.93410	5.43550	K562	EFTUD2
LIG1	ENSG00000105486.9	983.55260	1334.96850	-0.44070	3.02970	1.94610	K562	EIF3D
LIG1	ENSG00000105486.9	1375.64400	1743.97170	-0.34230	2.89030	2.05160	K562	EIF4A3
LIG1	ENSG00000105486.9	820.97780	1250.81230	-0.60750	5.80520	4.06280	K562	FKBP4
LIG1	ENSG00000105486.9	892.66430	1157.99000	-0.37540	2.85910	1.98980	K562	FMR1
LIG1	ENSG00000105486.9	719.25460	981.50720	-0.44850	3.12460	2.14780	K562	FTO
LIG1	ENSG00000105486.9	1389.21460	1813.65920	-0.38460	5.24090	4.44580	K562	FXR1
LIG1	ENSG00000105486.9	416.40040	942.06520	-1.17790	8.38960	7.01860	K562	G3BP2
LIG1	ENSG00000105486.9	835.59970	1086.58620	-0.37890	2.97750	2.15410	K562	GPKOW
LIG1	ENSG00000105486.9	1525.42630	2665.97530	-0.80550	16.15050	14.27560	K562	GRSF1
LIG1	ENSG00000105486.9	1780.38230	2241.34510	-0.33220	3.35040	2.16540	K562	HNRNPA1
LIG1	ENSG00000105486.9	1599.65280	2346.72810	-0.55290	3.45210	1.67280	K562	HNRNPAB
LIG1	ENSG00000105486.9	1210.52080	1439.81100	-0.25030	1.82860	1.33100	K562	HNRNPC
LIG1	ENSG00000105486.9	1821.07380	2283.89680	-0.32670	3.14990	2.01620	K562	HNRNPL
LIG1	ENSG00000105486.9	1672.66650	2482.19680	-0.56950	10.85640	9.11390	K562	HNRNPU
LIG1	ENSG00000105486.9	1559.68680	2288.28860	-0.55300	2.92560	1.46340	K562	ILF2
LIG1	ENSG00000105486.9	426.32140	927.82470	-1.12190	11.73640	9.68890	K562	KRR1
LIG1	ENSG00000105486.9	752.74950	1060.63190	-0.49470	4.74690	3.58140	K562	METAP2
LIG1	ENSG00000105486.9	3035.45610	3751.71090	-0.30560	2.94770	1.77730	K562	MSI2
LIG1	ENSG00000105486.9	1647.97290	2157.22170	-0.38850	6.91410	5.68230	K562	MTPAP
LIG1	ENSG00000105486.9	1956.46000	2396.84330	-0.29290	5.74340	4.72260	K562	NSUN2
LIG1	ENSG00000105486.9	1317.51690	1572.87710	-0.25560	2.05300	1.36370	K562	POLR2G
LIG1	ENSG00000105486.9	755.33280	1213.48310	-0.68400	7.60550	6.35690	K562	PRPF8
LIG1	ENSG00000105486.9	1990.66440	3840.34150	-0.94800	20.56120	18.24460	K562	PUF60
LIG1	ENSG00000105486.9	3238.54300	4085.35790	-0.33510	4.62560	3.21840	K562	PUM1
LIG1	ENSG00000105486.9	3480.36270	4002.27830	-0.20160	2.50430	1.58940	K562	PUM2
LIG1	ENSG00000105486.9	3372.42470	2734.39110	0.30250	2.31870	1.81240	K562	PUS1
LIG1	ENSG00000105486.9	3449.50000	2664.62550	0.37240	4.10660	3.40140	K562	RBM15
LIG1	ENSG00000105486.9	742.36890	1235.92790	-0.73540	7.59980	6.23230	K562	RPS19
LIG1	ENSG00000105486.9	1566.78830	2236.45450	-0.51340	2.99770	1.34370	K562	RPS3A
LIG1	ENSG00000105486.9	1723.44370	2365.10800	-0.45660	7.86430	6.54690	K562	SF3A3
LIG1	ENSG00000105486.9	674.67530	1033.40370	-0.61510	5.14220	3.79330	K562	SF3B1
LIG1	ENSG00000105486.9	717.01590	978.82780	-0.44900	3.02630	2.13140	K562	SF3B4
LIG1	ENSG00000105486.9	661.00450	866.90590	-0.39120	3.04410	1.37000	K562	SND1
LIG1	ENSG00000105486.9	1776.67630	1285.59580	0.46660	2.92470	1.84210	K562	SRSF5
LIG1	ENSG00000105486.9	875.71350	1174.66140	-0.42370	3.00850	1.94650	K562	SUPV3L1
LIG1	ENSG00000105486.9	1816.93430	1328.34040	0.45180	2.76540	1.94800	K562	TIA1
LIG1	ENSG00000105486.9	1917.28940	1304.22280	0.55580	2.46890	1.44960	K562	TRA2A
LIG1	ENSG00000105486.9	1690.92740	2174.61460	-0.36290	3.89060	2.84580	K562	WDR3
LIG1	ENSG00000105486.9	1897.15690	2261.36800	-0.25340	3.58680	2.63120	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LIG1 is not available on ENCORE database.

8 RBPs can affect the splicing of LIG1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	LIG1	ENSG00000105486.9	chr19	-	48630533	48630605			48626430	48626575	48631166	48631277	-0.06600	0.00015	0.00714	excluded	K562	AKAP8L
SE	LIG1	ENSG00000105486.9	chr19	-	48639290	48639382			48638936	48639036	48640264	48640341	-0.08400	0.00151	0.01727	excluded	K562	AQR
SE	LIG1	ENSG00000105486.9	chr19	-	48637237	48637323			48636238	48636354	48638936	48639036	-0.10700	0.00004	0.00076	excluded	K562	AQR
SE	LIG1	ENSG00000105486.9	chr19	-	48665518	48665608			48664430	48664764	48668806	48668880	-0.08500	0.00319	0.09010	excluded	K562	HNRNPU
SE	LIG1	ENSG00000105486.9	chr19	-	48655113	48655151			48654488	48654596	48657128	48657224	0.14700	0.00000	0.00000	included	K562	HNRNPC
SE	LIG1	ENSG00000105486.9	chr19	-	48639290	48639382			48638936	48639036	48640264	48640341	-0.22200	0.00231	0.03827	excluded	K562	HNRNPC
SE	LIG1	ENSG00000105486.9	chr19	-	48637237	48637323			48636238	48636354	48638936	48639036	-0.29600	0.00000	0.00000	excluded	K562	HNRNPC
A3SS	LIG1	ENSG00000105486.9	chr19	-	48639300	48639511			48639300	48639382	48640264	48640341	0.33400	0.00004	0.03332	longer	K562	PPIL4
A3SS	LIG1	ENSG00000105486.9	chr19	-	48640778	48641016			48640778	48640945	48643227	48643400	-0.08700	0.00002	0.02553	shorter	K562	EIF4G2
A3SS	LIG1	ENSG00000105486.9	chr19	-	48637237	48637367			48637237	48637323	48638936	48639083	0.07500	0.00047	0.00355	longer	K562	AQR
A3SS	LIG1	ENSG00000105486.9	chr19	-	48631166	48631305			48631166	48631277	48634332	48634428	0.14100	0.00000	0.00000	longer	K562	AQR
A3SS	LIG1	ENSG00000105486.9	chr19	-	48640778	48641016			48640778	48640945	48643227	48643400	0.11400	0.00454	0.02654	longer	K562	AQR
A3SS	LIG1	ENSG00000105486.9	chr19	-	48638936	48639083			48638936	48639036	48639290	48639382	0.07600	0.00029	0.00227	longer	K562	AQR
A3SS	LIG1	ENSG00000105486.9	chr19	-	48620894	48621079			48620894	48621038	48622393	48622447	0.07900	0.00007	0.00064	longer	K562	AQR
MXE	LIG1	ENSG00000105486.9	chr19	-	48654488	48654596	48657128	48657224	48653344	48653467	48660270	48660397	0.11900	0.00023	0.02570	1included	K562	LARP4
MXE	LIG1	ENSG00000105486.9	chr19	-	48654488	48654596	48657128	48657224	48653344	48653467	48660270	48660397	0.19900	0.00283	0.07949	1included	HepG2	TAF15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LIG1

General Information

Functions

Localization

Domains (AlphaFold: LIG1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LIG1 is not avaliable on ENCORE database.

27 proteins are bound to LIG1 RNA:

eCLIP assay for LIG1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LIG1 is not available on ENCORE database.

122 RBPs can affect the gene expression of LIG1 :

The Knockdown/knockout RNA-Seq assay for LIG1 is not available on ENCORE database.

8 RBPs can affect the splicing of LIG1 :

The Knockdown/knockout RNA-Seq assay for LIG1 is not avaliable on ENCORE database.