LARP1

General Information

Gene Name       : LARP1
Gene ID             : ENSG00000155506.16
Essential Gene : No

Functions

Localization(RBPImage: LARP1)

Domains (AlphaFold: LARP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LARP1ENSG00000155506.1688.1289.5088.81ENCSR000AEF
HepG2LARP1ENSG00000155506.1688.9683.0486.00ENCSR985KAT
K562LARP1ENSG00000155506.16133.24135.33134.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
LARP170180S1Submitted, ENCORE2BGHcLV43-27, Submitted, ENCORE2BGKcLV42-47, Submitted, ENCORE2


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
LARP1K562CRISPRLARP1-BGKcLV42-47,LARP1-BGKcLV42-48NT-BGKcLV42-1,NT-BGKcLV42-284.5,86.8SequencedENCORE2
LARP1HepG2CRISPRLARP1-BGHcLV43-27,LARP1-BGHcLV43-28NT-BGHcLV43-1,NT-BGHcLV43-288.1,88.0SequencedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    LARP1: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Cytoplasm
  • Cytosolic
  • Nuclear release mitosis












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    LARP1Product_ID: 70180S
    Lot_ID: 1
    Source: Cell Signaling Technology
    Target Name: LARP1-human    		 LARP1-HEPG2-CRISPR-70180S.png<br>Caption: Western blot following CRISPR against LARP1 in HepG2 whole cell lysate using LARP1 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against LARP1. LARP1 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.
    		 CST_70180S_1_LARP1.png<br>Caption: IP-WB analysis of 70180S whole cell lysate using the LARP1 specific antibody, 70180S. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the LARP1-specific antibody, 70180S. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
    		 LARP1-K562-CRISPR-70180S.png<br>Caption: Western blot following CRISPR against LARP1 in K562 whole cell lysate using LARP1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against LARP1. LARP1 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.








    RNA Targets

    • eCLIP assay for LARP1 is not avaliable on ENCORE database.



    Proteins bound to RNA
    • LARP1 RNA is bound by 83 proteins.  







    eCLIP assay for LARP1 is not avaliable on ENCORE database.





    83 proteins are bound to LARP1 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr5154173159154173250+3'-UTR,CDS3.7490823.65421HepG2FXR2
    chr5154169889154169924+3'-UTR,CDS3.271746.57746K562BUD13
    chr5154173490154173570+3'-UTR,CDS,intron-Distal,intron-Proximal3.688048.12027HepG2EFTUD2
    chr5154195052154195090+3'-UTR4.617855.51215K562RBM15
    chr5154195630154195670+3'-UTR3.626236.91717K562METAP2
    chr5154194027154194082+3'-UTR3.7460223.45541K562UPF1
    chr5154193973154194035+3'-UTR3.1534721.91765K562FAM120A
    chr5154195453154195474+3'-UTR3.883518.07578K562YBX3
    chr5154172230154172345+3'-UTR,CDS3.7015815.36600HepG2G3BP1
    chr5154194466154194534+3'-UTR3.6901235.18024K562PABPC4
    chr5154196635154196668+3'-UTR4.80341400.00000K562UPF1
    chr5154173192154173248+3'-UTR,CDS3.943763.36587K562FXR1
    chr5154195355154195401+3'-UTR5.2547326.64352K562LIN28B
    chr5154194606154194618+3'-UTR4.6520467.79596K562FAM120A
    chr5154173182154173253+3'-UTR,CDS3.1926620.56636K562PUM1
    chr5154196862154196910+3'-UTR4.487759.70176K562METAP2
    chr5154196902154196938+3'-UTR3.3735617.56078K562YBX3
    chr5154194082154194110+3'-UTR4.3683719.39009K562UPF1
    chr5154194694154194766+3'-UTR4.4945377.39627K562PUM2
    chr5154172316154172356+3'-UTR,CDS3.569804.80246K562FXR1
    chr5154193991154194038+3'-UTR3.134064.96529HepG2FAM120A
    chr5154194204154194248+3'-UTR3.867273.27788HepG2IGF2BP3
    chr5154194035154194060+3'-UTR3.2387410.98384K562FAM120A
    chr5154196314154196358+3'-UTR4.0668126.25273K562UPF1
    chr5154193976154194010+3'-UTR3.280294.29961K562METAP2
    chr5154194714154194742+3'-UTR4.0089123.09955K562UPF1
    chr5154194310154194350+3'-UTR4.4129512.69290K562IGF2BP2
    chr5154173355154173413+3'-UTR,CDS,intron-Distal,intron-Proximal4.641794.60331HepG2FTO
    chr5154194126154194165+3'-UTR3.934586.77715HepG2FAM120A
    chr5154173691154173729+3'-UTR,CDS3.585897.30935K562FMR1
    chr5154195200154195243+3'-UTR4.7642514.90877K562IGF2BP2
    chr5154196796154196836+3'-UTR3.415928.36853K562YBX3
    chr5154173753154173804+3'-UTR,CDS3.741068.23206K562FMR1
    chr5154194561154194592+3'-UTR4.3382874.58037K562UPF1
    chr5154173679154173743+3'-UTR,CDS4.682967.31777K562FXR1
    chr5154173362154173398+3'-UTR,CDS,intron-Distal,intron-Proximal3.8940610.13632K562UCHL5
    chr5154172311154172359+3'-UTR,CDS,intron-Proximal3.330595.07467HepG2TRA2A
    chr5154193658154193700+3'-UTR3.275505.18546HepG2UPF1
    chr5154195326154195416+3'-UTR4.175197.54016K562TARDBP
    chr5154194715154194780+3'-UTR3.9979715.72168K562IGF2BP2
    chr5154173702154173763+3'-UTR,CDS3.491854.77785K562RBFOX2
    chr5154172268154172357+3'-UTR,CDS,intron-Proximal3.684346.16964K562TRA2A
    chr5154172273154172355+3'-UTR,CDS3.6532113.63814HepG2BCLAF1
    chr5154173752154173798+3'-UTR,CDS5.1931115.17609K562FXR2
    chr5154194589154194606+3'-UTR4.38492400.00000K562FAM120A
    chr5154197049154197106+3'-UTR3.604264.89200K562ZC3H11A
    chr5154193696154193749+3'-UTR3.058723.16751HepG2NKRF
    chr5154193802154193869+3'-UTR4.367049.30447HepG2UPF1
    chr5154194558154194601+3'-UTR5.0486516.56794HepG2UPF1
    chr5154194974154195003+3'-UTR3.207509.30255K562YBX3
    chr5154173479154173625+3'-UTR,CDS,intron-Distal,intron-Proximal3.1492616.62004K562DDX24
    chr5154196867154196902+3'-UTR3.5141217.92819K562YBX3
    chr5154194838154194933+3'-UTR3.0944620.08737K562IGF2BP2
    chr5154173173154173264+3'-UTR,CDS3.298099.38788HepG2G3BP1
    chr5154197025154197084+3'-UTR4.2874311.00065K562DDX6
    chr5154194133154194184+3'-UTR3.292937.53199K562IGF2BP2
    chr5154173521154173559+3'-UTR,CDS,intron-Distal,intron-Proximal3.9878616.64180K562FXR2
    chr5154173153154173173+3'-UTR,CDS,intron-Proximal4.126906.53930HepG2G3BP1
    chr5154194258154194280+3'-UTR3.085127.19658K562IGF2BP2
    chr5154194694154194746+3'-UTR3.115796.56546K562RBM15
    chr5154194060154194090+3'-UTR3.7505723.71386K562FAM120A
    chr5154197019154197077+3'-UTR3.038283.16781HepG2FUBP3
    chr5154196166154196241+3'-UTR3.4634058.99460K562UPF1
    chr5154173600154173665+3'-UTR,CDS,intron-Proximal3.2462912.27081K562BUD13
    chr5154194621154194683+3'-UTR3.158075.31972HepG2EIF3H
    chr5154194196154194245+3'-UTR4.3896320.09143K562FAM120A
    chr5154173253154173285+3'-UTR,CDS,intron-Proximal3.0535314.03566K562PUM1
    chr5154195598154195615+3'-UTR3.7378510.32378K562YBX3
    chr5154172285154172353+3'-UTR,CDS3.480959.86835K562PUM1
    chr5154173468154173521+3'-UTR,CDS,intron-Distal,intron-Proximal3.6768317.87982K562FXR2
    chr5154194592154194714+3'-UTR4.14810400.00000K562UPF1
    chr5154172269154172358+3'-UTR,CDS,intron-Proximal4.1360918.71767HepG2FXR2
    chr5154173250154173283+3'-UTR,CDS3.9954513.09020HepG2FXR2
    chr5154195342154195409+3'-UTR4.3052412.20306HepG2LIN28B
    chr5154173154154173173+3'-UTR,CDS,intron-Proximal3.1808310.89712K562ZNF622
    chr5154195631154195687+3'-UTR4.0564731.96944K562UPF1
    chr5154173743154173803+3'-UTR,CDS4.001559.10058K562FXR1
    chr5154196590154196607+3'-UTR3.159027.02736K562PABPC4
    chr5154173476154173553+3'-UTR,CDS,intron-Distal,intron-Proximal3.171244.51101HepG2FTO
    chr5154194063154194077+3'-UTR3.002405.82898HepG2FAM120A
    chr5154196590154196624+3'-UTR5.2820476.94881K562UPF1
    chr5154195305154195320+3'-UTR3.421704.53300K562LIN28B
    chr5154197007154197113+3'-UTR3.896409.52846HepG2DDX55
    chr5154194618154194646+3'-UTR4.3974972.37452K562FAM120A
    chr5154173689154173741+3'-UTR,CDS3.2659010.18952K562UCHL5
    chr5154195838154195877+3'-UTR3.546703.08588HepG2IGF2BP3
    chr5154194304154194314+3'-UTR3.688333.17163HepG2FAM120A
    chr5154194038154194063+3'-UTR3.042944.98619HepG2FAM120A
    chr5154193685154193750+3'-UTR3.406479.41862HepG2FXR2
    chr5154169885154169924+3'-UTR,CDS4.1849210.19173K562FXR2
    chr5154194395154194425+3'-UTR4.652173.86169HepG2RBM15
    chr5154194206154194230+3'-UTR3.522454.58535K562AKAP1
    chr5154194258154194279+3'-UTR4.0498319.64645K562FAM120A
    chr5154194279154194308+3'-UTR3.5851020.45581K562FAM120A
    chr5154194090154194121+3'-UTR3.6789025.31715K562FAM120A
    chr5154196752154196768+3'-UTR3.2659618.33048K562YBX3
    chr5154196986154197080+3'-UTR3.0454820.23869K562PUM2
    chr5154195829154195876+3'-UTR3.7346610.00267HepG2PCBP2
    chr5154172302154172361+3'-UTR,CDS,intron-Proximal3.489304.57766HepG2SRSF1
    chr5154194116154194166+3'-UTR3.759844.41670HepG2AKAP1
    chr5154196768154196796+3'-UTR3.6435311.85001K562YBX3
    chr5154173406154173452+3'-UTR,CDS,intron-Distal3.819346.84754HepG2GRWD1
    chr5154173359154173416+3'-UTR,CDS,intron-Distal,intron-Proximal3.2911110.60861K562FMR1
    chr5154194134154194170+3'-UTR3.7978222.99611K562FAM120A
    chr5154194673154194694+3'-UTR3.6686426.20313K562PUM2
    chr5154173663154173744+3'-UTR,CDS3.2370512.93964HepG2FXR2
    chr5154172283154172316+3'-UTR,CDS4.265634.48916K562FXR1
    chr5154194261154194280+3'-UTR3.647093.84724HepG2IGF2BP1
    chr5154173688154173773+3'-UTR,CDS3.299087.62993HepG2GRWD1
    chr5154194260154194285+3'-UTR3.239444.36257HepG2IGF2BP3
    chr5154173249154173272+3'-UTR,CDS3.4106110.30572K562FXR2
    chr5154173272154173283+3'-UTR,CDS3.691838.10056K562FXR2
    chr5154173152154173184+3'-UTR,CDS,intron-Proximal4.5190520.41928K562UCHL5
    chr5154193804154193831+3'-UTR3.088635.48666K562METAP2
    chr5154194132154194170+3'-UTR3.743175.70424K562IGF2BP1
    chr5154194700154194777+3'-UTR4.0044553.29162K562FAM120A
    chr5154196717154196770+3'-UTR4.567036.59502HepG2DDX55
    chr5154173358154173423+3'-UTR,CDS,intron-Distal,intron-Proximal3.9156517.80371HepG2FXR2
    chr5154194506154194545+3'-UTR3.8834219.87478K562FAM120A
    chr5154194646154194700+3'-UTR4.3170765.42691K562FAM120A
    chr5154173361154173413+3'-UTR,CDS,intron-Distal,intron-Proximal3.7069515.28535K562FXR2
    chr5154194040154194077+3'-UTR3.1547013.03249K562IGF2BP2
    chr5154196120154196166+3'-UTR4.04582400.00000K562UPF1
    chr5154195308154195342+3'-UTR3.261744.48220HepG2LIN28B
    chr5154194568154194589+3'-UTR4.6644885.74771K562FAM120A
    chr5154194817154194892+3'-UTR3.331216.64216HepG2AKAP1
    chr5154193818154193859+3'-UTR3.113968.71435K562UPF1
    chr5154194843154194900+3'-UTR4.408654.41611HepG2IGF2BP3
    chr5154193704154193759+3'-UTR3.7965814.68801K562UCHL5
    chr5154193700154193754+3'-UTR4.1851910.93151HepG2UPF1
    chr5154193972154194106+3'-UTR4.2358524.80504HepG2UPF1
    chr5154173272154173283+3'-UTR,CDS3.586666.09767K562UCHL5
    chr5154194280154194310+3'-UTR3.7880812.95841K562IGF2BP2
    chr5154172311154172356+3'-UTR,CDS3.2174713.61409K562FXR2
    chr5154196130154196179+3'-UTR3.042143.90555K562TIA1
    chr5154195836154195857+3'-UTR3.5249316.59875K562UPF1
    chr5154194601154194713+3'-UTR4.5506121.99110HepG2UPF1
    chr5154194077154194126+3'-UTR3.173457.04368HepG2FAM120A
    chr5154194819154194898+3'-UTR3.367187.53739HepG2UPF1
    chr5154173681154173786+3'-UTR,CDS4.4908610.54430HepG2G3BP1
    chr5154194559154194568+3'-UTR4.8082136.33033K562FAM120A
    chr5154196124154196171+3'-UTR3.314084.74960HepG2UPF1
    chr5154195320154195355+3'-UTR5.2861627.05175K562LIN28B
    chr5154173691154173737+3'-UTR,CDS4.0688517.69860K562FXR2
    chr5154173207154173249+3'-UTR,CDS3.1986610.58912K562FXR2
    chr5154172300154172358+3'-UTR,CDS,intron-Proximal4.2523331.16350K562UCHL5
    chr5154196673154196709+3'-UTR5.3655245.23750K562UPF1
    chr5154195633154195684+3'-UTR3.781224.87412HepG2EIF3H
    chr5154193679154193761+3'-UTR3.176357.23016HepG2FAM120A
    chr5154170227154170298+3'-UTR,CDS,intron-Distal,intron-Proximal4.6826316.82955HepG2PRPF8
    chr5154196709154196777+3'-UTR4.4890351.61432K562UPF1
    chr5154172276154172355+3'-UTR,CDS3.6723626.79691K562ZNF622
    chr5154172181154172300+3'-UTR,CDS,intron-Proximal3.4173827.10778K562UCHL5
    chr5154193695154193759+3'-UTR5.2890734.57733K562UPF1
    chr5154193699154193753+3'-UTR4.1323533.22751K562FAM120A
    chr5154195809154195868+3'-UTR4.361696.54100K562PCBP1
    chr5154195003154195026+3'-UTR3.6920913.08486K562YBX3
    chr5154193691154193778+3'-UTR3.164188.14875K562DDX6
    chr5154194968154194997+3'-UTR5.027676.54449K562RBM15
    chr5154196610154196778+3'-UTR3.5779765.11306K562FAM120A
    chr5154194399154194412+3'-UTR3.4084210.00565K562FAM120A
    chr5154194283154194304+3'-UTR3.703684.98364HepG2FAM120A
    chr5154173359154173427+3'-UTR,CDS,intron-Distal,intron-Proximal3.515706.13998HepG2G3BP1
    chr5154196668154196673+3'-UTR4.2192624.28170K562UPF1
    chr5154196736154196776+3'-UTR3.184965.03652K562METAP2
    chr5154194641154194698+3'-UTR3.630696.02117HepG2FAM120A
    chr5154136697154136746+5'-UTR,intron-Distal3.351615.04671HepG2SFPQ
    chr5154135040154135138+5'-UTR,intron-Distal3.5352410.84631HepG2GTF2F1
    chr5154135152154135208+5'-UTR,intron-Distal3.2757012.80540HepG2CSTF2T
    chr5154136018154136086+5'-UTR,intron-Distal,intron-Proximal5.0208215.36134K562NONO
    chr5154135002154135157+5'-UTR,intron-Distal3.0483822.43108K562DDX52
    chr5154135148154135191+5'-UTR,intron-Distal3.661694.97312HepG2EFTUD2
    chr5154136763154136795+5'-UTR,intron-Distal5.067197.35452K562NONO
    chr5154136682154136739+5'-UTR,intron-Distal3.7372410.86799K562DHX30
    chr5154136627154136740+5'-UTR,intron-Distal3.095388.47603K562AKAP8L
    chr5154136838154136916+5'-UTR,intron-Distal,intron-Proximal4.2677918.39643K562NONO
    chr5154135266154135305+5'-UTR,intron-Distal3.599619.14481K562FXR2
    chr5154136839154136892+5'-UTR,intron-Distal,intron-Proximal5.5722324.26379K562CSTF2T
    chr5154135274154135317+5'-UTR,intron-Distal3.912378.02566K562EWSR1
    chr5154136670154136754+5'-UTR,intron-Distal3.9330615.94569K562CSTF2T
    chr5154135134154135210+5'-UTR,intron-Distal4.0015729.77435K562GEMIN5
    chr5154136640154136750+5'-UTR,intron-Distal4.2297638.73905K562DROSHA
    chr5154136039154136080+5'-UTR,intron-Distal4.800836.06709HepG2SFPQ
    chr5154136679154136768+5'-UTR,intron-Distal3.9106313.99564K562TIA1
    chr5154136686154136746+5'-UTR,intron-Distal4.154128.10313K562IGF2BP2
    chr5154135253154135365+5'-UTR,CDS,intron-Distal3.2203111.16376HepG2PRPF4
    chr5154136816154136908+5'-UTR,intron-Distal,intron-Proximal3.760293.21729HepG2TIA1
    chr5154135258154135356+5'-UTR,CDS,intron-Distal3.1044123.33253HepG2CSTF2T
    chr5154136841154136920+5'-UTR,intron-Distal,intron-Proximal5.0227932.45337HepG2CSTF2T
    chr5154136677154136752+5'-UTR,intron-Distal3.043303.92798K562DDX51
    chr5154135107154135150+5'-UTR,intron-Distal3.3644720.61441K562DROSHA
    chr5154135253154135356+5'-UTR,CDS,intron-Distal3.2157524.62008HepG2DDX3X
    chr5154135208154135248+5'-UTR,intron-Distal3.054657.85266HepG2CSTF2T
    chr5154135206154135250+5'-UTR,intron-Distal4.098128.73194K562FMR1
    chr5154135055154135149+5'-UTR,intron-Distal3.8252564.00220HepG2DDX3X
    chr5154136849154136898+5'-UTR,intron-Distal,intron-Proximal3.795677.87052K562GTF2F1
    chr5154135259154135312+5'-UTR,intron-Distal3.359705.10926HepG2GTF2F1
    chr5154135264154135289+5'-UTR,intron-Distal4.184498.83628K562DROSHA
    chr5154136843154136915+5'-UTR,intron-Distal,intron-Proximal4.3827115.98014K562EWSR1
    chr5154136839154136902+5'-UTR,intron-Distal,intron-Proximal4.071666.53752K562LSM11
    chr5154135149154135235+5'-UTR,intron-Distal3.9543010.52982K562FXR2
    chr5154135153154135213+5'-UTR,intron-Distal3.114508.59874K562DHX30
    chr5154136653154136760+5'-UTR,intron-Distal4.7793022.18196K562EWSR1
    chr5154135148154135206+5'-UTR,intron-Distal3.7003414.54073K562FMR1
    chr5154136678154136747+5'-UTR,intron-Distal3.726199.15991K562GEMIN5
    chr5154135306154135353+5'-UTR,CDS,intron-Distal3.9196111.67526K562GEMIN5
    chr5154136722154136762+5'-UTR,intron-Distal4.0556015.73554HepG2CSTF2T
    chr5154136015154136077+5'-UTR,intron-Distal4.3200111.87948K562EWSR1
    chr5154135314154135349+5'-UTR,CDS,intron-Distal3.187287.38874K562DGCR8
    chr5154135295154135369+5'-UTR,CDS,intron-Distal3.173647.01541K562NONO
    chr5154136683154136761+5'-UTR,intron-Distal3.858626.63093K562LSM11
    chr5154135250154135315+5'-UTR,intron-Distal3.432667.96174K562FMR1
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    chr5154136309154136374+intron-Distal4.3162815.14479K562EWSR1
    chr5154136892154136919+intron-Distal,intron-Proximal4.4117716.42365K562CSTF2T
    chr5154136515154136591+intron-Distal5.252909.31915HepG2GTF2F1
    chr5154137175154137231+intron-Distal3.344027.98910K562ILF3
    chr5154150879154150942+intron-Distal3.291815.82614HepG2HNRNPL
    chr5154137520154137562+intron-Distal4.593128.47057HepG2PCBP2
    chr5154135008154135107+intron-Distal3.7281049.78399K562DROSHA
    chr5154136666154136730+intron-Distal4.216646.16252K562PHF6
    chr5154136221154136223+intron-Distal4.848316.64314K562CSTF2T
    chr5154136673154136722+intron-Distal4.3920924.30459HepG2CSTF2T
    chr5154185337154185420+intron-Distal,intron-Proximal5.094818.74981HepG2SF3B4
    chr5154189147154189220+intron-Distal3.067873.46531K562KHSRP
    chr5154136521154136593+intron-Distal3.310584.57777HepG2XRN2
    chr5154136557154136626+intron-Distal4.447218.95172K562DDX51
    chr5154136108154136156+intron-Distal,intron-Proximal4.480776.30467K562FUS
    chr5154136296154136401+intron-Distal4.6711015.12208K562FUS
    chr5154136523154136601+intron-Distal3.7293511.53399K562AKAP8L
    chr5154135890154135938+intron-Distal3.206076.03599K562GEMIN5
    chr5154136524154136577+intron-Distal4.5995216.09093HepG2FAM120A
    chr5154136678154136732+intron-Distal3.958523.48768HepG2KHSRP
    chr5154137458154137528+intron-Distal3.759027.20478HepG2ILF3
    chr5154134940154134989+intron-Distal4.7963511.94390K562FMR1
    chr5154134995154135053+intron-Distal3.1853019.98184K562AKAP8L
    chr5154134901154134940+intron-Distal3.027005.16104K562FMR1
    chr5154134905154134936+intron-Distal3.600406.40119K562DHX30
    chr5154134993154135055+intron-Distal3.9558753.33200HepG2DDX3X
    chr5154137034154137076+intron-Distal3.216513.74203K562FUS
    chr5154136529154136586+intron-Distal4.235563.05559HepG2DGCR8
    chr5154137467154137515+intron-Distal4.2453613.26873K562CSTF2T
    chr5154182680154182718+intron-Distal3.839923.15719K562SMNDC1
    chr5154136513154136554+intron-Distal3.109328.75041K562TIA1
    chr5154136504154136589+intron-Distal3.9828717.59147K562FASTKD2
    chr5154136529154136572+intron-Distal5.5100111.98114K562NONO
    chr5154186547154186632+intron-Distal3.971626.41317HepG2QKI
    chr5154182616154182678+intron-Distal3.291886.87870K562EFTUD2
    chr5154135899154135957+intron-Distal3.383535.75174K562DROSHA
    chr5154137594154137682+intron-Distal4.8237014.55034K562ILF3
    chr5154138860154138903+intron-Distal3.998097.48999K562NONO
    chr5154136856154136895+intron-Distal,intron-Proximal4.4430312.84173K562DROSHA
    chr5154136314154136353+intron-Distal3.363858.09212K562DDX52
    chr5154137741154137869+intron-Distal3.8126013.67824K562CSTF2T
    chr5154135906154135935+intron-Distal4.570184.42259HepG2DDX59
    chr5154136512154136597+intron-Distal3.9370910.98705HepG2PRPF4
    chr5154134994154135053+intron-Distal4.3412716.90847HepG2PRPF4
    chr5154134940154134993+intron-Distal3.3896416.35514HepG2DDX3X
    chr5154136348154136352+intron-Distal3.056273.11443K562MTPAP
    chr5154137275154137319+intron-Distal4.111623.34627K562HNRNPK
    chr5154137277154137315+intron-Distal5.8156016.02019K562CSTF2T
    chr5154135798154135870+intron-Distal,intron-Proximal4.259559.38883K562EWSR1
    chr5154136534154136593+intron-Distal4.347875.37217HepG2FUS
    chr5154135901154135965+intron-Distal5.9866315.46130K562CSTF2T
    chr5154158565154158624+intron-Distal3.058793.37821K562ILF3
    chr5154137721154137789+intron-Distal5.203655.84413K562HNRNPM
    chr5154137202154137240+intron-Distal4.0325110.99589K562CSTF2T
    chr5154135881154135958+intron-Distal3.744008.81525K562EWSR1
    chr5154173863154173936+intron-Distal,intron-Proximal4.2935115.31355K562AQR
    chr5154177804154177872+intron-Distal5.436389.05715HepG2U2AF2
    chr5154137045154137077+intron-Distal4.810134.84986K562GTF2F1
    chr5154136625154136684+intron-Distal3.622964.14347HepG2XRN2
    chr5154137457154137522+intron-Distal4.1131511.10981K562HNRNPK
    chr5154136615154136673+intron-Distal3.5286218.86880HepG2CSTF2T
    chr5154144722154144869+intron-Distal3.467335.69530K562HNRNPK
    chr5154134975154135052+intron-Distal4.223219.87511HepG2PCBP2
    chr5154137622154137682+intron-Distal3.245033.35377HepG2QKI
    chr5154134909154134947+intron-Distal3.714685.82148K562DDX3X
    chr5154137522154137562+intron-Distal3.531394.79909K562HNRNPK
    chr5154134992154135049+intron-Distal3.1665712.77286K562FXR2
    chr5154146197154146275+intron-Distal3.838053.69388HepG2XPO5
    chr5154137064154137107+intron-Distal6.0802919.99815K562CSTF2T
    chr5154136317154136385+intron-Distal3.014693.05586HepG2RBM5
    chr5154135883154135968+intron-Distal5.4704713.80226K562FUS
    chr5154137921154137964+intron-Distal4.067298.23657K562CSTF2T
    chr5154136483154136588+intron-Distal3.569176.75879K562FUS
    chr5154136503154136587+intron-Distal3.336465.80922K562SLTM
    chr5154138033154138086+intron-Distal5.179978.51597K562NONO
    chr5154136517154136562+intron-Distal4.726944.19473HepG2FKBP4
    chr5154183358154183409+intron-Distal,intron-Proximal4.588337.21143HepG2EFTUD2
    chr5154162058154162154+intron-Distal3.572793.60408HepG2XPO5
    chr5154135087154135129+intron-Distal3.1912811.74669K562FXR2
    chr5154136288154136369+intron-Distal4.8743028.29553K562CSTF2T
    chr5154134986154135132+intron-Distal3.104015.88596HepG2FTO
    chr5154189055154189116+intron-Distal3.194064.08064K562KHSRP
    chr5154137787154137849+intron-Distal3.527526.15110K562EWSR1
    chr5154136505154136600+intron-Distal3.594289.67572HepG2NKRF
    chr5154138878154138977+intron-Distal3.727655.67571HepG2SFPQ
    chr5154136122154136167+intron-Distal,intron-Proximal3.2593010.23158HepG2CSTF2T
    chr5154137276154137317+intron-Distal3.980387.56833K562ILF3
    chr5154138180154138229+intron-Distal3.692156.58367HepG2HNRNPM
    chr5154137921154137961+intron-Distal3.810894.85046K562NONO
    chr5154138234154138278+intron-Distal3.389747.90279K562CSTF2T
    chr5154135895154135921+intron-Distal4.1872712.41022HepG2CSTF2T
    chr5154134994154135079+intron-Distal3.0713719.06437K562GEMIN5
    chr5154136514154136575+intron-Distal5.7176010.76825K562EWSR1
    chr5154183324154183351+intron-Proximal4.8957911.12698K562AQR
    chr5154173822154173835+intron-Proximal6.2218315.35700K562AQR
    chr5154173309154173356+intron-Proximal6.4138517.70754K562SF3B4
    chr5154173602154173649+intron-Proximal5.540489.00594HepG2SF3B4
    chr5154183305154183324+intron-Proximal4.060867.30031K562AQR
    chr5154173095154173133+intron-Proximal4.132764.32536HepG2SF3B4
    chr5154169980154170037+intron-Proximal5.213177.97468K562RBM22
    chr5154173611154173656+intron-Proximal5.0416312.52998K562SF3B4
    chr5154174881154174944+intron-Proximal4.9590213.40522HepG2PRPF8
    chr5154173605154173658+intron-Proximal3.504954.84179HepG2EFTUD2
    chr5154183337154183394+intron-Proximal4.843054.44893K562RBM22
    chr5154179608154179646+intron-Proximal6.2673614.09387K562AQR
    chr5154185612154185634+intron-Proximal4.757029.56266K562AQR
    chr5154183868154183916+intron-Proximal4.049857.64728K562AQR
    chr5154183926154183948+intron-Proximal3.469394.23459K562PRPF8
    chr5154183029154183078+intron-Proximal4.635775.89229K562EFTUD2
    chr5154174882154174918+intron-Proximal3.149863.59391K562AQR
    chr5154181540154181565+intron-Proximal5.082405.65342K562AQR
    chr5154179133154179140+intron-Proximal3.314204.11767K562U2AF2
    chr5154188209154188245+intron-Proximal4.082407.30031K562AQR
    chr5154183046154183090+intron-Proximal4.506437.39218K562SF3B4
    chr5154185390154185421+intron-Proximal4.923115.58150K562SF3B4
    chr5154179604154179641+intron-Proximal4.419624.58968K562PRPF8
    chr5154173611154173647+intron-Proximal3.392297.21479K562UCHL5
    chr5154182819154182841+intron-Proximal4.676914.96013K562PRPF8
    chr5154172356154172405+intron-Proximal4.136869.29543K562AQR
    chr5154169951154170003+intron-Proximal4.947969.56266K562AQR
    chr5154187959154188012+intron-Proximal5.7989110.47189K562SF3B4
    chr5154183027154183093+intron-Proximal4.163463.56713HepG2SF3B4
    chr5154173835154173863+intron-Proximal5.6650019.62251K562AQR
    chr5154173300154173354+intron-Proximal4.929216.66303HepG2SF3B4
    chr5154188180154188209+intron-Proximal4.1989115.98255K562AQR
    chr5154169958154170036+intron-Proximal4.071638.87031K562PRPF8
    chr5154187947154188004+intron-Proximal3.718553.05889HepG2SF3B4
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for LARP1 is not avaliable on ENCORE database.



    Diffrential Expression

    • The Knockdown/knockout assay for LARP1 is not available on ENCORE database.

    • 71 RBPs can affect the levels of LARP1.  








    The Knockdown/knockout RNA-Seq assay for LARP1 is not available on ENCORE database.





    71 RBPs can affect the gene expression of LARP1 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    LARP1ENSG00000155506.125738.681707075.56630-0.302101.981501.52180HepG2AKAP1
    LARP1ENSG00000155506.126706.817709548.31550-0.5096016.1109014.70010HepG2AUH
    LARP1ENSG00000155506.123934.968405040.93810-0.357302.819401.87220HepG2BCCIP
    LARP1ENSG00000155506.123446.057204379.93040-0.346002.842001.93110HepG2BCLAF1
    LARP1ENSG00000155506.123852.859005089.61400-0.401606.106405.01610HepG2CALR
    LARP1ENSG00000155506.125673.360908050.64650-0.504904.116302.91470HepG2CCAR1
    LARP1ENSG00000155506.123030.044104332.36000-0.515803.095302.28290HepG2CNOT7
    LARP1ENSG00000155506.125723.082706524.01080-0.189003.242502.45100HepG2DAZAP1
    LARP1ENSG00000155506.126347.748505459.573100.217403.914802.94350HepG2DDX19B
    LARP1ENSG00000155506.124166.311306777.59790-0.702009.773808.66160HepG2DDX3X
    LARP1ENSG00000155506.123647.540604956.41970-0.442404.041303.12590HepG2DDX55
    LARP1ENSG00000155506.123743.362105822.70750-0.637407.050606.10230HepG2DDX6
    LARP1ENSG00000155506.123434.058804229.36820-0.300504.370903.50370HepG2DNAJC21
    LARP1ENSG00000155506.127204.883005644.394600.352104.769903.25650HepG2EIF2S2
    LARP1ENSG00000155506.129523.9272010963.03880-0.203003.293702.64680HepG2ETF1
    LARP1ENSG00000155506.122431.748803183.59430-0.388705.246503.60710HepG2FAM120A
    LARP1ENSG00000155506.124418.599605789.19480-0.389803.213202.49930HepG2G3BP1
    LARP1ENSG00000155506.125179.296805996.01740-0.211202.776701.84130HepG2HNRNPA2B1
    LARP1ENSG00000155506.123428.633604749.49350-0.470106.246905.23720HepG2HNRNPC
    LARP1ENSG00000155506.126762.576807507.70690-0.150801.939701.33260HepG2HNRNPF
    LARP1ENSG00000155506.124557.539005942.70810-0.3829011.6918010.39070HepG2HNRNPL
    LARP1ENSG00000155506.125904.710707122.87620-0.270602.136501.57610HepG2HNRNPLL
    LARP1ENSG00000155506.127971.776506278.218200.344402.551401.94310HepG2MATR3
    LARP1ENSG00000155506.127877.483405981.923700.397007.255806.34870HepG2PCBP1
    LARP1ENSG00000155506.123684.668705194.38870-0.495403.202102.08720HepG2PCBP2
    LARP1ENSG00000155506.128767.595006555.842700.4193010.302009.30880HepG2PUM1
    LARP1ENSG00000155506.125728.791606591.97670-0.202502.119101.56020HepG2QKI
    LARP1ENSG00000155506.126348.256807799.34300-0.297003.834302.84350HepG2RBM15
    LARP1ENSG00000155506.127060.208409163.01030-0.376107.735106.96940HepG2RBM22
    LARP1ENSG00000155506.124439.057803465.942000.356904.240403.49400HepG2RPS19
    LARP1ENSG00000155506.122836.472403781.45510-0.414803.590802.71080HepG2RRP9
    LARP1ENSG00000155506.123027.802504201.64870-0.4727014.1708012.88130HepG2SAFB2
    LARP1ENSG00000155506.124222.479003478.446700.279502.194301.35270HepG2SERBP1
    LARP1ENSG00000155506.128396.4293010349.17420-0.301707.766207.04410HepG2SRFBP1
    LARP1ENSG00000155506.123698.599904720.50020-0.352003.008901.32030HepG2SRP68
    LARP1ENSG00000155506.127231.606906614.629800.128601.764901.36320HepG2SRSF1
    LARP1ENSG00000155506.126471.451507376.16420-0.188802.879902.17150HepG2SRSF7
    LARP1ENSG00000155506.128308.517206934.595900.260703.736703.03320HepG2SUCLG1
    LARP1ENSG00000155506.124040.907004933.83800-0.288002.174201.56440HepG2SUPV3L1
    LARP1ENSG00000155506.122671.028303306.85590-0.308102.345701.42180HepG2TFIP11
    LARP1ENSG00000155506.125459.449504584.383300.251902.898602.38900HepG2TIAL1
    LARP1ENSG00000155506.128215.675106033.583400.445307.327905.79850HepG2TUFM
    LARP1ENSG00000155506.129423.888306427.044900.552108.018406.95020HepG2U2AF1
    LARP1ENSG00000155506.126192.747106998.12430-0.176402.630601.94640HepG2UPF1
    LARP1ENSG00000155506.128575.353506756.414900.343808.784707.81550HepG2UTP3
    LARP1ENSG00000155506.122949.736003897.54170-0.402002.394601.38410HepG2XPO5
    LARP1ENSG00000155506.123907.979204856.82850-0.313602.758502.03410HepG2XRN2
    LARP1ENSG00000155506.126355.525606990.72380-0.137402.085701.48980HepG2ZC3H8
    LARP1ENSG00000155506.126001.734007696.59790-0.3588012.1724011.22860HepG2ZNF622
    LARP1ENSG00000155506.1210877.1385013569.17790-0.319003.414702.68740K562AKAP8L
    LARP1ENSG00000155506.1217119.2747014396.552200.249802.505901.33040K562APOBEC3C
    LARP1ENSG00000155506.1211928.4571014237.21920-0.255303.623702.56630K562ATP5C1
    LARP1ENSG00000155506.127345.016808564.69350-0.221602.546801.62910K562BCLAF1
    LARP1ENSG00000155506.1212162.4321014153.58250-0.218703.167101.97810K562CPEB4
    LARP1ENSG00000155506.125446.620206806.96980-0.321703.721602.49230K562DDX3X
    LARP1ENSG00000155506.1219198.0146014648.009000.3902010.065508.91360K562DDX47
    LARP1ENSG00000155506.129686.3945012659.40600-0.386208.269207.12590K562EIF2S2
    LARP1ENSG00000155506.127714.085205598.810000.462302.604501.63120K562EIF3A
    LARP1ENSG00000155506.1212752.166309087.923300.488604.629803.25100K562EIF3D
    LARP1ENSG00000155506.127335.704706351.090500.207802.575201.80650K562EIF3G
    LARP1ENSG00000155506.1219689.1805016315.208400.271105.069103.81530K562EIF4G2
    LARP1ENSG00000155506.129216.0350012184.59470-0.402804.477103.37930K562FIP1L1
    LARP1ENSG00000155506.1211317.235707395.833300.6136020.2340018.70970K562FXR1
    LARP1ENSG00000155506.124436.717005735.23700-0.370402.396401.74500K562G3BP2
    LARP1ENSG00000155506.1212179.6375016870.43450-0.470007.828406.54390K562GRSF1
    LARP1ENSG00000155506.125951.531606904.99590-0.214401.914401.40620K562HNRNPC
    LARP1ENSG00000155506.1212323.2180016520.36870-0.422905.359204.26880K562HSPD1
    LARP1ENSG00000155506.1213888.1602017390.72890-0.324503.146701.94010K562MSI2
    LARP1ENSG00000155506.129696.5261013831.26180-0.512407.079005.65340K562PPIG
    LARP1ENSG00000155506.1215995.6508018552.21880-0.213902.672001.72810K562PUM2
    LARP1ENSG00000155506.129520.9642013457.33700-0.499206.631705.83300K562PUS1
    LARP1ENSG00000155506.1212497.783508796.102000.506608.602706.75320K562SAFB
    LARP1ENSG00000155506.128901.2945012796.60390-0.5237025.0460022.70140K562SRPK2
    LARP1ENSG00000155506.126280.753707915.96730-0.333804.242003.37440K562SRSF1
    LARP1ENSG00000155506.1214471.543609901.661600.5474011.9079010.20510K562SYNCRIP
    LARP1ENSG00000155506.1212154.4165013421.80380-0.143102.147901.50860K562UPF1
    LARP1ENSG00000155506.1216368.1657011942.600100.4547017.4062015.54660K562WDR43
    LARP1ENSG00000155506.1213223.1050015533.20030-0.232302.053701.32230K562ZC3H8
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for LARP1 is not available on ENCORE database.





    19 RBPs can affect the splicing of LARP1 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SELARP1ENSG00000155506.12chr5+154173359154173560154173154154173283154173659154173822-0.074000.001980.03611excludedK562SRSF1
    SELARP1ENSG00000155506.12chr5+154173359154173560154173154154173283154173659154173822-0.217000.000000.00000excludedK562PRPF8
    SELARP1ENSG00000155506.12chr5+154173359154173560154173154154173283154173659154173822-0.230000.000000.00000excludedHepG2U2AF1
    SELARP1ENSG00000155506.12chr5+154173359154173560154173154154173283154173659154173822-0.058000.000240.00415excludedHepG2U2AF2
    SELARP1ENSG00000155506.12chr5+154173359154173560154173154154173283154173659154173822-0.052000.001290.04825excludedK562FXR1
    SELARP1ENSG00000155506.12chr5+1541733591541734611541731541541732831541736591541738220.060000.000320.06618includedK562GPKOW
    SELARP1ENSG00000155506.12chr5+154173359154173560154173154154173283154173659154173822-0.116000.002490.04753excludedK562U2AF1
    SELARP1ENSG00000155506.12chr5+154173359154173560154173154154173283154173659154173822-0.079000.002750.05607excludedHepG2SRSF1
    SELARP1ENSG00000155506.12chr5+154173359154173461154173154154173283154173659154173822-0.218000.006430.08766excludedK562U2AF2
    SELARP1ENSG00000155506.12chr5+154173359154173560154173154154173283154173659154173822-0.065000.000360.00806excludedK562HNRNPC
    A3SSLARP1ENSG00000155506.12chr5+154183760154183867154183774154183867154183059154183305-0.061000.000000.00001shorterK562SF3B4
    A5SSLARP1ENSG00000155506.12chr5+154173359154173560154173359154173461154173659154173822-0.169000.000070.05693shorterK562SAFB
    A5SSLARP1ENSG00000155506.12chr5+1541819091541820511541819091541819591541828491541829730.057000.000000.00000longerK562PUS1
    A5SSLARP1ENSG00000155506.12chr5+1541733591541735601541733591541734611541736591541738660.096000.000000.00006longerK562PUS1
    A5SSLARP1ENSG00000155506.12chr5+1541733591541735601541733591541734611541736591541738660.077000.002210.03667longerK562AQR
    A5SSLARP1ENSG00000155506.12chr5+1541733591541735601541733591541734821541736591541738220.071000.000030.02117longerK562MTPAP
    A5SSLARP1ENSG00000155506.12chr5+154173359154173560154173359154173461154173659154173822-0.194000.000050.01770shorterHepG2IGF2BP3
    A5SSLARP1ENSG00000155506.12chr5+154173359154173560154173359154173461154173659154173822-0.293000.000010.00209shorterHepG2HNRNPU
    A5SSLARP1ENSG00000155506.12chr5+154173359154173560154173359154173461154173659154173822-0.220000.000300.06780shorterHepG2PCBP2
    A5SSLARP1ENSG00000155506.12chr5+154173359154173560154173359154173461154173659154173822-0.151000.000000.00219shorterHepG2TBRG4
    A5SSLARP1ENSG00000155506.12chr5+154173359154173560154173359154173461154173659154173822-0.142000.000010.00197shorterK562FXR1
    A5SSLARP1ENSG00000155506.12chr5+1541733591541735601541733591541734611541736591541738660.076000.000150.02010longerK562UTP18
    A5SSLARP1ENSG00000155506.12chr5+1541733591541735601541733591541734611541736591541738660.080000.000040.00676longerK562AKAP8L
    A5SSLARP1ENSG00000155506.12chr5+154173359154173560154173359154173461154173659154173822-0.267000.000020.04798shorterHepG2FUS
    MXELARP1ENSG00000155506.12chr5+1541731871541732831541733591541735601541721811541723561541736591541738220.095000.001820.032381includedK562HNRNPC

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for LARP1 is not avaliable on ENCORE database.