GTSE1

General Information

Gene Name       : GTSE1
Gene ID             : ENSG00000075218.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GTSE1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GTSE1ENSG00000075218.1819.4325.2522.34ENCSR000AEF
HepG2GTSE1ENSG00000075218.1826.0223.3124.66ENCSR985KAT
K562GTSE1ENSG00000075218.1813.0111.5912.30ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GTSE1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GTSE1 RNA is bound by 11 proteins.  







eCLIP assay for GTSE1 is not avaliable on ENCORE database.





11 proteins are bound to GTSE1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr224669282146692935+5'-UTR,intron-Distal,intron-Proximal4.803689.10443HepG2PRPF8
chr224670457946704678+CDS3.462806.49817K562RBM15
chr224670985646709936+CDS,intron-Proximal3.008884.16939HepG2PPIG
chr224672532646725423+CDS3.619485.97027HepG2GRWD1
chr224670990246709974+CDS,intron-Proximal4.130256.79646HepG2PRPF8
chr224670479146704838+CDS4.223454.08604HepG2PPIG
chr224669504346695142+intron-Distal4.154033.72005K562MATR3
chr224671888646718953+intron-Distal3.941274.09469HepG2XPO5
chr224672483446724936+intron-Distal,intron-Proximal5.7803110.14519HepG2XPO5
chr224669285346692940+intron-Distal,intron-Proximal3.776266.39201HepG2RBM22
chr224671865946718744+intron-Distal3.902753.57432K562NONO
chr224671350446713564+intron-Distal3.832634.86210HepG2HNRNPM
chr224669289546692944+intron-Distal,intron-Proximal5.766236.75859HepG2DDX3X
chr224669283346692927+intron-Proximal4.168423.58858HepG2NCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GTSE1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GTSE1 is not available on ENCORE database.

  • 129 RBPs can affect the levels of GTSE1.  








The Knockdown/knockout RNA-Seq assay for GTSE1 is not available on ENCORE database.





129 RBPs can affect the gene expression of GTSE1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GTSE1ENSG00000075218.14209.56170337.71860-0.688404.296402.98710HepG2AATF
GTSE1ENSG00000075218.14435.38890645.56150-0.568206.829305.96040HepG2ACO1
GTSE1ENSG00000075218.14152.32460368.99110-1.276409.719808.78950HepG2AKAP1
GTSE1ENSG00000075218.1497.57490239.61700-1.296108.800707.05330HepG2AKAP8
GTSE1ENSG00000075218.14422.26120648.63960-0.619307.425606.23790HepG2AKAP8L
GTSE1ENSG00000075218.1429.90390305.29900-3.3518039.4569037.08350HepG2ASCC1
GTSE1ENSG00000075218.14504.16460734.46930-0.542804.186702.48350HepG2ATP5C1
GTSE1ENSG00000075218.14411.74920847.50700-1.0415021.2333019.65570HepG2AUH
GTSE1ENSG00000075218.14311.28520552.02620-0.826505.754804.38200HepG2BCCIP
GTSE1ENSG00000075218.14153.16830479.68840-1.6470018.1842016.21220HepG2BCLAF1
GTSE1ENSG00000075218.1415.58310525.24980-5.0750030.6096028.98700HepG2BOP1
GTSE1ENSG00000075218.14167.22760551.90630-1.7226028.2528026.31880HepG2CALR
GTSE1ENSG00000075218.14136.45700290.05830-1.087907.545806.31800HepG2CIRBP
GTSE1ENSG00000075218.14131.22400645.47540-2.2983066.5989064.37870HepG2CKAP4
GTSE1ENSG00000075218.1458.68560235.09280-2.002206.967505.75490HepG2CNOT7
GTSE1ENSG00000075218.14211.11500482.17950-1.191505.733504.77670HepG2CPSF6
GTSE1ENSG00000075218.14441.55290723.04200-0.711509.460708.40580HepG2CELF1
GTSE1ENSG00000075218.14441.30690777.46250-0.8170015.1199013.62480HepG2DAZAP1
GTSE1ENSG00000075218.14156.48280372.66450-1.2519012.5731011.25080HepG2DDX21
GTSE1ENSG00000075218.14196.79190364.63240-0.889807.286305.81430HepG2DDX24
GTSE1ENSG00000075218.1476.91370353.44380-2.2002025.1933023.49830HepG2DDX3X
GTSE1ENSG00000075218.14236.76320542.74560-1.1968010.846109.43550HepG2DDX55
GTSE1ENSG00000075218.14157.59710547.55960-1.796809.788708.02750HepG2DDX59
GTSE1ENSG00000075218.1464.40620303.66680-2.2372021.0302019.54070HepG2DDX6
GTSE1ENSG00000075218.14446.32590617.64150-0.468704.295103.48680HepG2DKC1
GTSE1ENSG00000075218.14243.97880461.58200-0.9198010.439409.14380HepG2DNAJC21
GTSE1ENSG00000075218.14216.83570457.50000-1.0772015.8850014.44770HepG2DNAJC2
GTSE1ENSG00000075218.14267.00660382.18090-0.517402.884201.75350HepG2EFTUD2
GTSE1ENSG00000075218.14113.21160343.12850-1.5997014.4233012.14610HepG2AGO1
GTSE1ENSG00000075218.1425.43780291.87140-3.5203038.5716036.53710HepG2EIF2S1
GTSE1ENSG00000075218.14127.08710372.17620-1.5502015.6149013.68140HepG2EIF3D
GTSE1ENSG00000075218.14217.88790322.52750-0.565802.712202.07940HepG2EIF4A3
GTSE1ENSG00000075218.14207.29050314.07280-0.599402.411501.76820HepG2EIF4B
GTSE1ENSG00000075218.14351.17850767.00170-1.1270021.7211019.84990HepG2EIF4G1
GTSE1ENSG00000075218.14419.87520734.74090-0.807308.562807.16110HepG2EIF4G2
GTSE1ENSG00000075218.14376.09420973.03880-1.3714035.5698033.85580HepG2ETF1
GTSE1ENSG00000075218.14422.35320630.87700-0.578905.189004.04660HepG2EWSR1
GTSE1ENSG00000075218.14185.96230355.11060-0.933307.818306.08110HepG2FASTKD2
GTSE1ENSG00000075218.14545.44920821.65580-0.591103.725302.84060HepG2FIP1L1
GTSE1ENSG00000075218.14248.29000451.76790-0.863606.223904.39570HepG2FKBP4
GTSE1ENSG00000075218.14142.23340483.06510-1.764009.177507.35890HepG2FTO
GTSE1ENSG00000075218.14729.75260325.491301.1647014.0852012.64510HepG2FXR1
GTSE1ENSG00000075218.14168.50350301.90170-0.841305.073804.18540HepG2G3BP1
GTSE1ENSG00000075218.14232.22810546.51020-1.234706.238305.30370HepG2GPKOW
GTSE1ENSG00000075218.14382.76940616.35930-0.687309.131807.49090HepG2HDGF
GTSE1ENSG00000075218.14247.73270421.50980-0.766803.618102.00950HepG2HLTF
GTSE1ENSG00000075218.14216.93130466.00400-1.1031010.711409.56550HepG2HNRNPA1
GTSE1ENSG00000075218.14448.31490714.50320-0.672408.774407.28850HepG2HNRNPA2B1
GTSE1ENSG00000075218.14253.78020518.34130-1.0303010.357009.08990HepG2HNRNPC
GTSE1ENSG00000075218.14429.15060568.80010-0.406403.409902.61990HepG2HNRNPF
GTSE1ENSG00000075218.14476.40500708.21330-0.572007.353006.30150HepG2HNRNPL
GTSE1ENSG00000075218.14100.12840521.55180-2.3810013.1547011.91900HepG2HNRNPLL
GTSE1ENSG00000075218.14336.29210514.91450-0.614606.451505.55770HepG2HNRNPU
GTSE1ENSG00000075218.1441.31900306.86250-2.8927032.6567030.65290HepG2IGF2BP2
GTSE1ENSG00000075218.14317.57140525.96840-0.7279010.157808.84200HepG2ILF2
GTSE1ENSG00000075218.14483.00130590.15790-0.289102.230101.31270HepG2KIF1C
GTSE1ENSG00000075218.14568.46340925.67110-0.703405.529304.34160HepG2LARP4
GTSE1ENSG00000075218.14316.37820459.99030-0.540003.603002.21560HepG2LIN28B
GTSE1ENSG00000075218.14492.71490325.605200.597503.724502.96310HepG2MAGOH
GTSE1ENSG00000075218.14512.76090327.415500.647103.984103.23960HepG2MATR3
GTSE1ENSG00000075218.14218.05030389.48990-0.836904.471603.15260HepG2METAP2
GTSE1ENSG00000075218.14459.16290665.11790-0.534604.211203.22440HepG2MSI2
GTSE1ENSG00000075218.14314.58590558.47250-0.828008.263206.21450HepG2NAA15
GTSE1ENSG00000075218.14318.06660498.32710-0.647802.812201.71130HepG2NONO
GTSE1ENSG00000075218.14265.14310462.51190-0.802703.284202.47040HepG2NSUN2
GTSE1ENSG00000075218.14131.30040230.05340-0.809104.526502.48900HepG2NUP35
GTSE1ENSG00000075218.14110.38090298.39930-1.4348011.9936010.51800HepG2PABPC4
GTSE1ENSG00000075218.14398.43410509.67970-0.355202.465701.66200HepG2PARN
GTSE1ENSG00000075218.14142.24090416.00320-1.5483014.0146011.94660HepG2PCBP2
GTSE1ENSG00000075218.14348.60950623.63190-0.839106.739405.59260HepG2PRPF4
GTSE1ENSG00000075218.1482.54340418.74370-2.3428030.1752027.96950HepG2PRPF8
GTSE1ENSG00000075218.14413.27340320.925500.364802.256001.75230HepG2PTBP1
GTSE1ENSG00000075218.14275.40830735.91550-1.4180024.0785022.55720HepG2PUF60
GTSE1ENSG00000075218.14516.66790781.20190-0.596509.012808.07320HepG2PUM1
GTSE1ENSG00000075218.14545.34190780.63430-0.517505.025704.13610HepG2PUM2
GTSE1ENSG00000075218.14470.93050657.55420-0.481604.398703.65550HepG2PUS1
GTSE1ENSG00000075218.14178.98500401.38180-1.165106.725605.65190HepG2RAVER1
GTSE1ENSG00000075218.14514.40430840.48200-0.708309.011707.58200HepG2RBM15
GTSE1ENSG00000075218.14103.57190813.28300-2.9731088.9147086.78900HepG2RBM22
GTSE1ENSG00000075218.14210.87610315.41830-0.580903.201302.48120HepG2RBM25
GTSE1ENSG00000075218.14390.97520528.36500-0.434502.679501.70180HepG2RBM27
GTSE1ENSG00000075218.14212.04780456.83570-1.107303.285701.50080HepG2RBM39
GTSE1ENSG00000075218.14392.08270227.147200.787404.149702.28980HepG2RBM47
GTSE1ENSG00000075218.14663.89440357.141600.8944012.5622011.56420HepG2NELFE
GTSE1ENSG00000075218.14743.35790332.660901.1599022.0526020.59890HepG2RECQL
GTSE1ENSG00000075218.1470.07480612.74800-3.1283066.2547064.03130HepG2RPLP0
GTSE1ENSG00000075218.14129.97090394.40880-1.6015013.7637011.83790HepG2RPS10
GTSE1ENSG00000075218.1481.06320362.18130-2.1596029.5278027.87770HepG2RPS19
GTSE1ENSG00000075218.14235.05660487.27560-1.0517010.536809.06190HepG2RPS2
GTSE1ENSG00000075218.1466.93470236.32830-1.820006.038904.86130HepG2RPS3A
GTSE1ENSG00000075218.1440.10700414.23000-3.3685046.4525044.04050HepG2RRP9
GTSE1ENSG00000075218.14247.60850363.44610-0.553703.100302.10230HepG2SERBP1
GTSE1ENSG00000075218.14302.35910582.37620-0.945707.776906.60720HepG2SF3A3
GTSE1ENSG00000075218.14226.10620516.18830-1.190905.988404.98360HepG2SF3B1
GTSE1ENSG00000075218.14437.50940705.61830-0.6896010.009008.80450HepG2SLBP
GTSE1ENSG00000075218.14352.26840534.75490-0.602206.861305.91820HepG2SMN1
GTSE1ENSG00000075218.14134.94070574.36610-2.0896011.355709.78700HepG2SNRNP70
GTSE1ENSG00000075218.14140.39000918.57790-2.7100099.2805097.37540HepG2SRFBP1
GTSE1ENSG00000075218.14574.38630348.729800.719808.251607.53440HepG2SRSF1
GTSE1ENSG00000075218.14295.68230555.54820-0.909902.586501.62220HepG2SRSF3
GTSE1ENSG00000075218.14369.44390726.60350-0.9758016.8180015.45960HepG2SRSF5
GTSE1ENSG00000075218.14258.79510558.82980-1.1106017.4295015.94830HepG2SRSF7
GTSE1ENSG00000075218.14116.30060283.72360-1.2866012.8399011.80700HepG2SRSF9
GTSE1ENSG00000075218.14548.93180797.55130-0.539006.753006.01920HepG2SSB
GTSE1ENSG00000075218.14350.57590548.92450-0.646903.871502.42930HepG2STAU1
GTSE1ENSG00000075218.14222.63360375.12030-0.752703.382002.04450HepG2SUB1
GTSE1ENSG00000075218.14109.74790263.14350-1.261708.103105.84800HepG2SUGP2
GTSE1ENSG00000075218.14287.38350554.92720-0.9493010.204908.50380HepG2SUPT6H
GTSE1ENSG00000075218.1439.67510540.31210-3.7675067.3787065.04320HepG2SUPV3L1
GTSE1ENSG00000075218.14215.24190313.49510-0.542503.086902.49900HepG2TAF15
GTSE1ENSG00000075218.14153.24130508.55790-1.730608.897607.70230HepG2TARDBP
GTSE1ENSG00000075218.1480.27830362.16270-2.1736023.0644020.85660HepG2TFIP11
GTSE1ENSG00000075218.1498.15740500.34310-2.3497045.0320043.46510HepG2TIAL1
GTSE1ENSG00000075218.14218.28910504.80780-1.2095019.9519018.61230HepG2TRIM56
GTSE1ENSG00000075218.14335.84330702.94340-1.0656011.6173010.30070HepG2U2AF1
GTSE1ENSG00000075218.1497.03210522.68460-2.4294011.833709.68130HepG2U2AF2
GTSE1ENSG00000075218.1491.63040319.19070-1.8005018.6188016.69200HepG2UCHL5
GTSE1ENSG00000075218.14111.99580516.47820-2.2053047.7060045.57590HepG2UPF1
GTSE1ENSG00000075218.14243.96510530.87110-1.1217016.5785014.34850HepG2UTP18
GTSE1ENSG00000075218.14210.61570498.64020-1.2434017.8180016.49610HepG2UTP3
GTSE1ENSG00000075218.1452.83670568.02780-3.4263098.8039096.80740HepG2ZNF622
GTSE1ENSG00000075218.141076.56520785.068400.455403.791603.12560K562AQR
GTSE1ENSG00000075218.14924.349501129.15280-0.288702.634001.68270K562CELF1
GTSE1ENSG00000075218.14492.98190755.74060-0.616407.937306.91070K562DDX47
GTSE1ENSG00000075218.14504.81090347.217200.539802.575501.34470K562EEF2
GTSE1ENSG00000075218.14683.21970550.242400.312202.387901.71170K562EIF2S2
GTSE1ENSG00000075218.14175.72130297.42760-0.759203.939103.05930K562G3BP2
GTSE1ENSG00000075218.14516.92690733.32390-0.504503.843302.95820K562GRSF1
GTSE1ENSG00000075218.14237.10760457.14280-0.947103.540502.87580K562HNRNPC
GTSE1ENSG00000075218.14482.32300640.25940-0.408703.259402.29300K562HNRNPU
GTSE1ENSG00000075218.14107.94170308.96380-1.5172010.908108.93270K562KRR1
GTSE1ENSG00000075218.14652.89490488.290800.419003.238601.77590K562PCBP1
GTSE1ENSG00000075218.14193.41790332.33630-0.780903.355502.45450K562RPS19
GTSE1ENSG00000075218.14501.43710663.01930-0.403003.479902.57130K562SF3A3
GTSE1ENSG00000075218.14215.34100297.69740-0.467202.465201.70610K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GTSE1 is not available on ENCORE database.





4 RBPs can affect the splicing of GTSE1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGTSE1ENSG00000075218.14chr22+4670404646704104466932764669337646704215467048400.345000.000050.00337includedK562PRPF8
SEGTSE1ENSG00000075218.14chr22+4670404646704104466932764669337646704215467048400.276000.000770.05973includedHepG2TBRG4
SEGTSE1ENSG00000075218.14chr22+467223324672255146719035467191594672458446725027-0.134000.001520.01740excludedK562AQR
SEGTSE1ENSG00000075218.14chr22+4670404646704104466932764669337646704215467048400.227000.000510.05976includedHepG2SSB
MXEGTSE1ENSG00000075218.14chr22+46719032467191594672233246722551467119334671230946724584467250270.125000.000070.000881includedK562AQR
MXEGTSE1ENSG00000075218.14chr22+46719035467191594672233246722551467119334671230946724584467250270.117000.000200.002181includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GTSE1 is not avaliable on ENCORE database.