CRAT

General Information

Gene Name       : CRAT
Gene ID             : ENSG00000095321.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CRAT)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CRATENSG00000095321.160.501.030.77ENCSR000AEF
HepG2CRATENSG00000095321.1631.4512.8922.17ENCSR985KAT
K562CRATENSG00000095321.168.424.996.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CRAT is not avaliable on ENCORE database.



Proteins bound to RNA
  • CRAT RNA is bound by 10 proteins.  







eCLIP assay for CRAT is not avaliable on ENCORE database.





10 proteins are bound to CRAT RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9131857355131857570-3'-UTR,intron-Distal,intron-Proximal5.0417416.10077HepG2UPF1
chr9131857272131857355-3'-UTR,intron-Distal4.644975.14974HepG2UPF1
chr9131857515131857601-3'-UTR,intron-Distal,intron-Proximal4.456935.18898HepG2LARP4
chr9131857470131857587-3'-UTR,intron-Distal,intron-Proximal4.621075.58306HepG2AKAP1
chr9131857525131857613-3'-UTR,intron-Distal,intron-Proximal4.668835.38389HepG2PCBP2
chr9131862811131862893-3'-UTR,CDS,intron-Distal3.517934.13746HepG2PPIG
chr9131864122131864179-3'-UTR,CDS,intron-Distal,intron-Proximal3.748635.13777HepG2PRPF8
chr9131860245131860314-3'-UTR,CDS,intron-Distal,intron-Proximal4.252467.79098HepG2PRPF8
chr9131860808131860918-3'-UTR,CDS,intron-Distal,intron-Proximal3.376633.22540HepG2G3BP1
chr9131872926131873020-5'-UTR,intron-Distal,intron-Proximal4.851196.05264HepG2DDX3X
chr9131872065131872159-intron-Distal4.381646.57521HepG2DDX59
chr9131872091131872236-intron-Distal3.055745.14461HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CRAT is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CRAT is not available on ENCORE database.

  • 112 RBPs can affect the levels of CRAT.  








The Knockdown/knockout RNA-Seq assay for CRAT is not available on ENCORE database.





112 RBPs can affect the gene expression of CRAT :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CRATENSG00000095321.12356.49520704.46090-0.982603.583802.37150HepG2AATF
CRATENSG00000095321.122421.414701740.313400.476403.988002.87020HepG2ABCF1
CRATENSG00000095321.12714.004501155.90740-0.695006.563405.70810HepG2ACO1
CRATENSG00000095321.12689.238301919.35050-1.4775016.7024015.50870HepG2AKAP1
CRATENSG00000095321.12896.58670463.744600.951006.938005.58960HepG2BCLAF1
CRATENSG00000095321.121442.25150751.970800.9395015.3169014.06750HepG2BOP1
CRATENSG00000095321.121131.42950690.328600.712708.074306.95010HepG2CPSF6
CRATENSG00000095321.12865.08170550.221000.652708.843907.05380HepG2YBX3
CRATENSG00000095321.121435.224001068.928200.425004.854503.79030HepG2DDX19B
CRATENSG00000095321.121144.84890775.930300.561104.458703.61900HepG2DDX21
CRATENSG00000095321.12938.75470491.009400.934905.048203.36850HepG2DDX27
CRATENSG00000095321.121526.837401105.822400.465306.304605.36110HepG2DKC1
CRATENSG00000095321.12809.70630540.237300.583706.045305.03780HepG2DNAJC21
CRATENSG00000095321.12992.30140535.522700.8897021.7173020.04640HepG2DNAJC2
CRATENSG00000095321.121596.57870912.470700.8070010.299408.66390HepG2EEF2
CRATENSG00000095321.12507.13510740.62400-0.546404.140303.04990HepG2EIF3D
CRATENSG00000095321.122398.567901677.409100.515804.255303.46690HepG2EIF4A3
CRATENSG00000095321.121180.21740955.994800.303903.216402.32800HepG2EIF4G1
CRATENSG00000095321.121546.93720915.782400.7562010.240608.72170HepG2EIF4G2
CRATENSG00000095321.121251.120101757.17960-0.490003.491902.63400HepG2FIP1L1
CRATENSG00000095321.121146.035201622.77160-0.501806.006504.87040HepG2FUBP3
CRATENSG00000095321.121275.589601693.23490-0.408602.042201.44450HepG2FXR1
CRATENSG00000095321.12896.958701570.30310-0.807907.764306.67930HepG2G3BP1
CRATENSG00000095321.122332.52270782.482301.5757034.0039032.05920HepG2GPKOW
CRATENSG00000095321.12980.83020545.413500.8466011.3909010.22070HepG2HNRNPA1
CRATENSG00000095321.121216.70450606.690301.003804.910704.00700HepG2HNRNPC
CRATENSG00000095321.121314.59450751.851500.8060017.9597016.33610HepG2HNRNPF
CRATENSG00000095321.12802.956401591.05600-0.986609.058507.85250HepG2HNRNPK
CRATENSG00000095321.121249.24380746.742600.742308.389607.35810HepG2HNRNPLL
CRATENSG00000095321.12868.238101212.04800-0.481305.391104.11180HepG2HNRNPM
CRATENSG00000095321.121713.01390740.356801.2101031.7435029.64280HepG2IGF2BP1
CRATENSG00000095321.12724.501401498.40700-1.048404.390303.15860HepG2IGF2BP3
CRATENSG00000095321.12825.30770615.612300.422805.538404.53170HepG2ILF2
CRATENSG00000095321.121464.245401056.481200.470806.437704.91370HepG2KIF1C
CRATENSG00000095321.121217.08440761.709300.676002.570601.64110HepG2MTPAP
CRATENSG00000095321.12840.97650609.334700.464703.320601.77490HepG2NIP7
CRATENSG00000095321.121299.33370773.561400.748105.503903.51680HepG2NOLC1
CRATENSG00000095321.121287.44920662.173000.9591014.2189012.66560HepG2NSUN2
CRATENSG00000095321.12862.340001724.60440-0.9999031.5802029.91400HepG2PCBP1
CRATENSG00000095321.12802.53790612.495500.389803.166101.84470HepG2PKM
CRATENSG00000095321.121021.07120537.537200.925505.847404.80740HepG2PPIL4
CRATENSG00000095321.121322.978301051.959900.330603.817202.92190HepG2PRPF4
CRATENSG00000095321.121133.900401754.83810-0.6300013.3068012.28640HepG2PTBP1
CRATENSG00000095321.121935.95830917.241301.0776023.8405022.32440HepG2PUF60
CRATENSG00000095321.12776.01870973.69100-0.327403.897803.21970HepG2PUM1
CRATENSG00000095321.121477.573401900.55730-0.363204.346103.58850HepG2QKI
CRATENSG00000095321.12399.18200719.55940-0.850102.865602.14950HepG2RAVER1
CRATENSG00000095321.121071.23520738.999900.535503.293101.40820HepG2RBM14
CRATENSG00000095321.12580.632201363.74280-1.2319012.7075011.75940HepG2RBM22
CRATENSG00000095321.12920.017401724.86870-0.9068011.8272010.49250HepG2RBM25
CRATENSG00000095321.121617.174501952.97580-0.272203.350302.76730HepG2NELFE
CRATENSG00000095321.121588.799401818.91440-0.195101.913901.38810HepG2RECQL
CRATENSG00000095321.121353.34810809.962700.740509.816808.66290HepG2RPLP0
CRATENSG00000095321.121113.79550707.404500.654803.447202.39270HepG2RPS10
CRATENSG00000095321.121000.00470749.460000.416002.620101.84010HepG2RPS2
CRATENSG00000095321.121096.17580646.003000.762803.364702.48310HepG2RPS3A
CRATENSG00000095321.12224.99380400.18900-0.830802.569101.80860HepG2RRP9
CRATENSG00000095321.121415.03870536.700301.3986055.0978052.79850HepG2SAFB2
CRATENSG00000095321.121168.301001718.75950-0.557003.977503.16210HepG2SF3A3
CRATENSG00000095321.121209.89470739.093700.711008.525607.35020HepG2SF3B1
CRATENSG00000095321.121219.313601827.03340-0.5834012.1128011.01300HepG2SF3B4
CRATENSG00000095321.121440.57300879.489000.7118017.9999016.50390HepG2SLBP
CRATENSG00000095321.12922.980501540.23020-0.738806.490905.81180HepG2SRFBP1
CRATENSG00000095321.12664.929201907.01900-1.5200067.3898065.76660HepG2SRSF1
CRATENSG00000095321.12493.62140795.36410-0.688203.086602.02150HepG2SRSF3
CRATENSG00000095321.121178.11020905.640800.379403.805403.09290HepG2SRSF5
CRATENSG00000095321.121198.24460738.677200.6978013.2217011.89590HepG2SRSF7
CRATENSG00000095321.121082.837301551.45430-0.518809.970209.03570HepG2SRSF9
CRATENSG00000095321.124310.770201337.167301.68870126.69780124.63380HepG2SSB
CRATENSG00000095321.121507.124301186.081700.345502.741101.80410HepG2SUPT6H
CRATENSG00000095321.12992.67220522.479700.925804.547403.71220HepG2SUPV3L1
CRATENSG00000095321.12740.725001714.07990-1.2104037.4466035.68830HepG2TAF15
CRATENSG00000095321.121442.86700727.999200.9868016.1148014.61320HepG2TARDBP
CRATENSG00000095321.121266.769401575.03050-0.314202.821801.97790HepG2TIA1
CRATENSG00000095321.121631.14970585.544501.4779045.9717044.39320HepG2TIAL1
CRATENSG00000095321.121120.97760590.853600.9238022.1158020.71500HepG2TRIM56
CRATENSG00000095321.12734.759701502.85400-1.0324013.1126011.70930HepG2U2AF1
CRATENSG00000095321.121643.19620948.510700.792702.431401.65030HepG2UBE2L3
CRATENSG00000095321.122316.767401524.278100.6039016.0928014.67920HepG2UPF1
CRATENSG00000095321.121083.704401471.62880-0.441406.700805.83740HepG2UTP3
CRATENSG00000095321.121309.92680514.327201.3486018.7972016.96870HepG2XRN2
CRATENSG00000095321.121337.342401038.126600.365305.344004.46070HepG2ZC3H8
CRATENSG00000095321.122336.988501676.412400.479207.744406.94940HepG2ZNF622
CRATENSG00000095321.12894.00840657.607400.443005.330304.58420K562AGGF1
CRATENSG00000095321.121116.07100722.671100.626905.465503.97320K562AKAP8
CRATENSG00000095321.12251.07030355.57200-0.502102.255601.71710K562AQR
CRATENSG00000095321.12309.86310166.507300.895907.302205.71790K562BCLAF1
CRATENSG00000095321.12246.75430161.248300.613702.707001.84310K562BOP1
CRATENSG00000095321.12312.64490225.141700.473602.397001.43030K562CCAR1
CRATENSG00000095321.121170.47690785.828900.574707.911305.90850K562CCDC124
CRATENSG00000095321.12487.41400334.895300.541302.964001.46560K562CKAP4
CRATENSG00000095321.12299.35640171.441900.804005.274904.19980K562CPSF6
CRATENSG00000095321.12199.51090126.320600.659302.793301.73000K562CSTF2
CRATENSG00000095321.12496.46060361.406600.458003.639402.24970K562DDX21
CRATENSG00000095321.12474.06570327.838300.532003.948402.67290K562DDX3X
CRATENSG00000095321.12462.63500360.108200.361302.515901.37460K562EIF2S1
CRATENSG00000095321.12401.12150189.789001.0795011.9744010.63290K562EIF2S2
CRATENSG00000095321.12410.27410254.908800.686505.518403.68930K562EXOSC5
CRATENSG00000095321.12324.85520197.448300.718204.556803.44710K562FIP1L1
CRATENSG00000095321.12271.68400174.460100.638903.114202.20120K562FMR1
CRATENSG00000095321.12158.09680356.19890-1.1719012.4277011.23780K562FXR1
CRATENSG00000095321.1237.63820131.77330-1.807808.927507.51070K562G3BP2
CRATENSG00000095321.12234.92490163.675700.521302.148401.44560K562GPKOW
CRATENSG00000095321.1273.44260219.33720-1.578504.870703.18830K562HNRNPK
CRATENSG00000095321.12322.11920219.926600.550502.400101.46380K562IGF2BP2
CRATENSG00000095321.12226.28120139.782500.694802.260801.42610K562KRR1
CRATENSG00000095321.12179.10600287.35700-0.682004.066702.32610K562LARP7
CRATENSG00000095321.12892.53750695.142100.360503.100101.94470K562MAK16
CRATENSG00000095321.12274.54280159.769600.780904.718903.55610K562METAP2
CRATENSG00000095321.12415.58690570.19080-0.456302.037101.30240K562NAA15
CRATENSG00000095321.12644.10580442.417000.541806.253305.19280K562NSUN2
CRATENSG00000095321.12561.62300333.306100.752702.872701.85810K562PABPN1
CRATENSG00000095321.1295.59750205.37580-1.103203.812602.66460K562PCBP2
CRATENSG00000095321.12333.86200224.138900.574803.274502.36870K562PPIG
CRATENSG00000095321.12156.59520328.93260-1.070805.529802.99740K562PRPF6
CRATENSG00000095321.12442.84650265.828500.736205.435104.11000K562PSIP1
CRATENSG00000095321.12354.10550537.25040-0.601403.894302.93230K562PUF60
CRATENSG00000095321.12344.48430230.021800.582603.157202.04460K562SRFBP1
CRATENSG00000095321.12121.57870219.94730-0.855302.667601.97190K562SRSF1
CRATENSG00000095321.12378.38530276.056200.454802.300001.35620K562SRSF4
CRATENSG00000095321.12395.21390207.795300.927404.551803.14650K562SRSF5
CRATENSG00000095321.12150.62160249.45950-0.727904.231303.21030K562SYNCRIP
CRATENSG00000095321.12337.03640222.538700.598703.074702.32740K562TARDBP
CRATENSG00000095321.12386.37350214.680100.847706.422105.09760K562TIA1
CRATENSG00000095321.12526.81080271.753600.954909.568507.54530K562TRIM56
CRATENSG00000095321.12345.13760230.989500.579203.033201.57100K562TRIP6
CRATENSG00000095321.1267.81070131.83340-0.959104.151903.16960K562U2AF2
CRATENSG00000095321.12769.93930469.102500.7147010.440309.15870K562UPF1
CRATENSG00000095321.12523.21510401.398900.382302.137301.36950K562WDR3
CRATENSG00000095321.12539.99260400.482200.431102.939102.04620K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CRAT is not available on ENCORE database.





11 RBPs can affect the splicing of CRAT :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECRATENSG00000095321.12chr9-1318714571318715561318700921318703561318727611318730610.442000.000000.00012includedHepG2U2AF1
SECRATENSG00000095321.12chr9-1318714571318715561318702121318703561318727611318730610.216000.000110.01332includedHepG2TBRG4
SECRATENSG00000095321.12chr9-1318714571318715561318700921318703561318727611318730610.612000.000880.01263includedHepG2U2AF2
SECRATENSG00000095321.12chr9-1318714571318715561318702121318703561318727611318730610.322000.000090.00930includedHepG2AKAP1
SECRATENSG00000095321.12chr9-1318714571318715561318702121318703561318727611318730480.203000.000320.03054includedHepG2DDX3X
SECRATENSG00000095321.12chr9-1318714571318715561318702121318703561318727611318730610.253000.000090.00960includedHepG2NCBP2
SECRATENSG00000095321.12chr9-1318714571318715561318700921318703561318727611318730610.328000.003360.06526includedHepG2SRSF1
SECRATENSG00000095321.12chr9-1318714571318715561318702121318703561318727611318730610.229000.000000.00013includedHepG2SSB
A3SSCRATENSG00000095321.12chr9-1318647201318648741318647201318648441318652911318653450.149000.008800.04735longerK562AQR
MXECRATENSG00000095321.12chr9-1318652911318653451318664661318665851318647201318648441318700921318703560.095000.000490.008951includedHepG2SFPQ
MXECRATENSG00000095321.12chr9-1318652911318653451318664661318665851318647201318648441318700921318703560.079000.000340.016921includedHepG2RBFOX2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CRAT is not avaliable on ENCORE database.