C9orf16

General Information

Gene Name       : C9orf16
Gene ID             : ENSG00000171159.4
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C9orf16)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C9orf16ENSG00000171159.41.807.664.73ENCSR000AEF
HepG2C9orf16ENSG00000171159.412.731.447.08ENCSR985KAT
K562C9orf16ENSG00000171159.4130.8220.2575.53ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C9orf16 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C9orf16 RNA is bound by 10 proteins.  







eCLIP assay for C9orf16 is not avaliable on ENCORE database.





10 proteins are bound to C9orf16 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9130926140130926180+3'-UTR4.3759120.78725K562YBX3
chr9130925887130926020+3'-UTR,CDS4.214227.16588HepG2LARP4
chr9130925976130926023+3'-UTR5.1908516.24756K562PCBP1
chr9130925905130925980+3'-UTR4.364206.29269K562DDX6
chr9130925870130925918+3'-UTR,CDS3.276815.00580K562METAP2
chr9130926032130926158+3'-UTR3.044489.02329K562METAP2
chr9130926076130926140+3'-UTR4.5071241.69919K562YBX3
chr9130925892130925967+3'-UTR3.5391716.36702K562DDX55
chr9130925976130926023+3'-UTR5.4040954.05471K562PABPC4
chr9130925879130925901+3'-UTR,CDS3.282998.20394K562YBX3
chr9130926084130926174+3'-UTR6.5867125.67841K562PCBP1
chr9130926026130926052+3'-UTR3.9914318.14647K562YBX3
chr9130926023130926121+3'-UTR4.8218460.64834K562PABPC4
chr9130926023130926084+3'-UTR6.0429832.08051K562PCBP1
chr9130925913130925976+3'-UTR5.40938400.00000K562PABPC4
chr9130925902130925976+3'-UTR4.514529.31157K562PCBP1
chr9130926052130926075+3'-UTR3.5195621.78521K562YBX3
chr9130925834130925913+3'-UTR,CDS5.6893662.12515K562PABPC4
chr9130925918130926010+3'-UTR4.4272410.54996K562METAP2
chr9130922656130922706+5'-UTR,CDS4.1293221.71699K562YBX3
chr9130922615130922707+5'-UTR,CDS4.279557.60655K562DDX3X
chr9130922587130922637+5'-UTR4.2211218.36590K562YBX3
chr9130922637130922645+5'-UTR4.8946415.35662K562YBX3
chr9130922645130922656+5'-UTR4.5495921.68013K562YBX3
chr9130922629130922696+5'-UTR,CDS5.216464.57565HepG2DDX3X
chr9130922639130922758+5'-UTR,CDS3.320757.84829K562METAP2
chr9130922706130922728+CDS3.7166211.50271K562YBX3
chr9130925789130925828+CDS3.009989.17096K562YBX3
chr9130922707130922763+CDS3.500635.67913K562DDX3X
chr9130922711130922764+CDS5.5382649.24062K562PABPC4
chr9130925649130925759+CDS,intron-Proximal4.6626312.46803K562AQR
chr9130922759130922845+CDS,intron-Proximal5.638507.63570K562AQR
chr9130925728130925788+CDS4.7352615.08701K562PABPC4
chr9130925788130925834+CDS4.5552318.10591K562PABPC4
chr9130922696130922745+CDS3.681274.17587HepG2DDX3X
chr9130925787130925845+CDS3.601224.08867HepG2LARP4
chr9130922890130922956+intron-Distal4.154767.05950K562XRN2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C9orf16 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C9orf16 is not available on ENCORE database.

  • 128 RBPs can affect the levels of C9orf16.  








The Knockdown/knockout RNA-Seq assay for C9orf16 is not available on ENCORE database.





128 RBPs can affect the gene expression of C9orf16 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C9orf16ENSG00000171159.4288.85030195.796900.560902.374201.50060HepG2ABCF1
C9orf16ENSG00000171159.4383.90610115.501701.7327015.5329014.37660HepG2AKAP1
C9orf16ENSG00000171159.4205.2549081.630301.330107.475905.82330HepG2AKAP8
C9orf16ENSG00000171159.4250.9108095.560401.392608.832207.48230HepG2ASCC1
C9orf16ENSG00000171159.4148.9417056.532201.397502.282901.43590HepG2BCCIP
C9orf16ENSG00000171159.4206.61370109.186500.920004.065002.87060HepG2CCAR1
C9orf16ENSG00000171159.4166.8989044.227501.915908.838507.49790HepG2CNOT7
C9orf16ENSG00000171159.4267.23530161.254000.728704.097002.76470HepG2CPSF7
C9orf16ENSG00000171159.4138.0070055.311201.319007.135406.19390HepG2CELF1
C9orf16ENSG00000171159.427.3960059.75030-1.125002.171301.37280HepG2DDX24
C9orf16ENSG00000171159.4411.35870110.625801.8946021.2974019.73030HepG2DDX3X
C9orf16ENSG00000171159.4178.0601055.595701.679207.100105.93100HepG2DDX55
C9orf16ENSG00000171159.4336.1735095.067701.822108.314107.29790HepG2DDX6
C9orf16ENSG00000171159.4101.8584031.878001.675807.668806.54520HepG2DNAJC21
C9orf16ENSG00000171159.4168.8796031.602002.417808.915507.82510HepG2DNAJC2
C9orf16ENSG00000171159.4213.7172091.353301.226107.117606.19850HepG2EIF2S1
C9orf16ENSG00000171159.4110.2860056.205000.972403.342702.45320HepG2EIF4G2
C9orf16ENSG00000171159.4221.09780155.857000.504402.160601.42270HepG2EWSR1
C9orf16ENSG00000171159.4136.3454071.084400.939604.019702.58290HepG2FAM120A
C9orf16ENSG00000171159.4101.31010192.36160-0.925004.073403.12760HepG2FUBP3
C9orf16ENSG00000171159.4187.7282094.495600.990204.812903.94680HepG2G3BP1
C9orf16ENSG00000171159.4154.4369070.781401.125505.345704.09680HepG2GEMIN5
C9orf16ENSG00000171159.4223.39260152.276700.552802.989301.97720HepG2HDGF
C9orf16ENSG00000171159.493.5130037.454201.319904.463302.68560HepG2HNRNPA0
C9orf16ENSG00000171159.4107.3210036.568701.553106.478604.23240HepG2HNRNPAB
C9orf16ENSG00000171159.4142.2098087.986000.692602.928202.19190HepG2HNRNPF
C9orf16ENSG00000171159.4221.0483095.753001.206907.071005.99080HepG2HNRNPK
C9orf16ENSG00000171159.4164.5199054.171901.6025011.5922010.29630HepG2HNRNPL
C9orf16ENSG00000171159.4138.0601035.563201.956703.387502.72260HepG2HNRNPU
C9orf16ENSG00000171159.4104.1106042.198201.302804.789903.16900HepG2KHDRBS1
C9orf16ENSG00000171159.4228.51800115.432200.985203.111202.22750HepG2LARP4
C9orf16ENSG00000171159.4113.5199041.519601.451006.111304.44850HepG2LARP7
C9orf16ENSG00000171159.4285.07090102.494601.4757010.574109.39980HepG2MATR3
C9orf16ENSG00000171159.4321.81220104.901601.6171013.9837012.62940HepG2NCBP2
C9orf16ENSG00000171159.479.4206037.544001.080803.216501.69330HepG2NIP7
C9orf16ENSG00000171159.4156.6768084.189300.896003.349201.76750HepG2NKRF
C9orf16ENSG00000171159.4156.6467058.970701.409308.665807.34020HepG2NOL12
C9orf16ENSG00000171159.4129.5613051.115701.341703.491302.25510HepG2NONO
C9orf16ENSG00000171159.4104.9194040.441401.375304.570003.40930HepG2PABPC1
C9orf16ENSG00000171159.484.8028035.199201.268503.692302.72890HepG2PARN
C9orf16ENSG00000171159.4188.31300109.097700.787403.972103.27180HepG2PCBP1
C9orf16ENSG00000171159.4128.5023031.719202.0183010.407209.02390HepG2PPIL4
C9orf16ENSG00000171159.457.17420125.24520-1.131305.254604.22390HepG2PRPF4
C9orf16ENSG00000171159.4242.79340110.997601.129108.289807.44810HepG2PTBP1
C9orf16ENSG00000171159.4194.8919056.293501.7915013.5142012.33070HepG2PUF60
C9orf16ENSG00000171159.4342.4882059.759002.5187043.5494041.77340HepG2PUM1
C9orf16ENSG00000171159.4157.1216059.714701.395607.901706.79530HepG2PUM2
C9orf16ENSG00000171159.4263.44200189.495200.475202.226601.74810HepG2RBM22
C9orf16ENSG00000171159.4183.7151050.064401.8755011.841609.76700HepG2RBM27
C9orf16ENSG00000171159.482.8632040.654301.027202.795101.72960HepG2RCC2
C9orf16ENSG00000171159.4286.64110123.540801.214209.881908.97530HepG2NELFE
C9orf16ENSG00000171159.4141.4404077.373500.870203.358702.68940HepG2RPS19
C9orf16ENSG00000171159.4165.5207046.175301.8417010.751909.25880HepG2RPS2
C9orf16ENSG00000171159.4113.2572047.132101.264704.773903.34890HepG2RPS5
C9orf16ENSG00000171159.4160.3667031.669502.3401012.9223011.68190HepG2SAFB2
C9orf16ENSG00000171159.4101.1587041.869601.272503.665202.16580HepG2SART3
C9orf16ENSG00000171159.4248.85160115.586801.106206.217205.39050HepG2SF3B4
C9orf16ENSG00000171159.4123.2503053.978601.191005.671204.72730HepG2SLBP
C9orf16ENSG00000171159.4130.5261036.930201.8214010.724909.59120HepG2SMN1
C9orf16ENSG00000171159.4130.5015040.871301.674804.941203.62780HepG2SMNDC1
C9orf16ENSG00000171159.494.8981039.003501.282703.661701.80230HepG2SND1
C9orf16ENSG00000171159.4322.43270214.027500.591104.216003.63610HepG2SRFBP1
C9orf16ENSG00000171159.462.41500120.63780-0.950702.228001.79140HepG2SRSF1
C9orf16ENSG00000171159.4155.2365055.582701.481709.439408.37650HepG2SRSF5
C9orf16ENSG00000171159.4136.9331086.440400.663602.691502.00520HepG2SRSF7
C9orf16ENSG00000171159.477.73470185.82600-1.257308.546107.74200HepG2SSB
C9orf16ENSG00000171159.496.2662038.697601.314704.983003.45960HepG2STIP1
C9orf16ENSG00000171159.4251.9397063.211901.9947022.3088020.81640HepG2SUCLG1
C9orf16ENSG00000171159.4196.59450133.511500.558202.236801.38740HepG2SUPT6H
C9orf16ENSG00000171159.4137.4802055.324701.313103.793303.02000HepG2SUPV3L1
C9orf16ENSG00000171159.4114.5219037.070001.627206.027304.64840HepG2TFIP11
C9orf16ENSG00000171159.4143.1695034.549402.0509012.9360011.99130HepG2TIAL1
C9orf16ENSG00000171159.4252.5571034.865602.8566026.5828025.05910HepG2TRIM56
C9orf16ENSG00000171159.4243.1654054.997902.144406.463705.04200HepG2TUFM
C9orf16ENSG00000171159.495.75190169.13360-0.820802.814602.18090HepG2U2AF1
C9orf16ENSG00000171159.4231.2031058.215401.9896012.9086011.06160HepG2UBE2L3
C9orf16ENSG00000171159.493.3225032.668401.514205.086504.04930HepG2UCHL5
C9orf16ENSG00000171159.4266.98170134.943100.984303.866703.06160HepG2UPF1
C9orf16ENSG00000171159.4239.93870130.282400.880903.056602.43260HepG2UTP3
C9orf16ENSG00000171159.4110.7545039.830001.475303.573102.31980HepG2XPO5
C9orf16ENSG00000171159.4107.2108054.461700.977001.983401.36190HepG2XRN2
C9orf16ENSG00000171159.42008.683801263.023300.669305.931305.14990K562AGGF1
C9orf16ENSG00000171159.4908.20540703.610700.368103.572101.83820K562AKAP1
C9orf16ENSG00000171159.42264.922801387.964100.706407.588505.74540K562AKAP8
C9orf16ENSG00000171159.42519.969301314.255700.939102.633101.99460K562AKAP8L
C9orf16ENSG00000171159.42144.781901379.013600.637106.708305.20320K562ATP5C1
C9orf16ENSG00000171159.4730.92030342.529201.0934012.2680010.23100K562BCLAF1
C9orf16ENSG00000171159.41880.124001509.308300.316803.503902.15530K562CCDC124
C9orf16ENSG00000171159.4476.36670289.363400.719103.825502.31040K562CIRBP
C9orf16ENSG00000171159.41117.32650816.688300.452102.553301.49060K562CPEB4
C9orf16ENSG00000171159.4602.31610259.859701.212702.818201.75100K562CSTF2
C9orf16ENSG00000171159.41121.089201648.01940-0.555802.597501.65300K562CELF1
C9orf16ENSG00000171159.41173.07910712.869900.718506.369504.70970K562DDX3X
C9orf16ENSG00000171159.4987.79370722.733200.450604.944903.01730K562DDX6
C9orf16ENSG00000171159.41694.795401414.090800.261102.921302.01870K562DKC1
C9orf16ENSG00000171159.4434.78320312.612300.475802.558301.68370K562EFTUD2
C9orf16ENSG00000171159.41007.22410621.516700.696405.759904.77860K562EIF2S2
C9orf16ENSG00000171159.4648.72260362.109100.841104.356201.88430K562EIF3H
C9orf16ENSG00000171159.4969.10510670.641600.531006.507304.60500K562EIF4B
C9orf16ENSG00000171159.4998.74340467.767001.094205.848004.58430K562FIP1L1
C9orf16ENSG00000171159.4176.58090405.90280-1.200809.047206.84000K562FKBP4
C9orf16ENSG00000171159.4612.24100774.48890-0.339102.889602.27370K562FXR1
C9orf16ENSG00000171159.459.75310128.90940-1.109304.281403.35930K562G3BP2
C9orf16ENSG00000171159.41135.95940828.160500.455802.777102.01980K562GRSF1
C9orf16ENSG00000171159.4668.16010466.948600.516803.691703.01520K562HNRNPC
C9orf16ENSG00000171159.4740.03230417.130000.827004.140902.71160K562HNRNPF
C9orf16ENSG00000171159.4842.43680270.225601.640303.877702.57970K562IGF2BP2
C9orf16ENSG00000171159.4508.32430274.758100.887509.424607.07870K562IGF2BP3
C9orf16ENSG00000171159.4537.75930283.754400.922206.954505.59590K562MAGOH
C9orf16ENSG00000171159.42087.017601335.111000.644409.746007.33530K562MAK16
C9orf16ENSG00000171159.4482.36530283.141900.768507.429405.82550K562MATR3
C9orf16ENSG00000171159.42093.227301562.398500.421905.495904.12350K562MBNL1
C9orf16ENSG00000171159.4783.063201004.99380-0.360003.756002.82550K562MTPAP
C9orf16ENSG00000171159.4553.62980308.260600.844703.013401.64630K562NONO
C9orf16ENSG00000171159.41062.29840459.977401.207505.961903.59600K562NUSAP1
C9orf16ENSG00000171159.41681.51820586.794901.5187012.7307010.07730K562PABPN1
C9orf16ENSG00000171159.4662.44430455.997800.538704.171602.36630K562PHF6
C9orf16ENSG00000171159.41254.94370531.172801.240304.445403.37030K562PPIG
C9orf16ENSG00000171159.41766.61160697.591801.340409.156506.02590K562PPP1R8
C9orf16ENSG00000171159.4453.99420304.210200.577501.980001.33910K562PRPF8
C9orf16ENSG00000171159.4912.30140418.708501.123508.480106.71180K562PSIP1
C9orf16ENSG00000171159.4452.12340275.703200.713506.469205.48870K562PTBP1
C9orf16ENSG00000171159.4998.110101555.36400-0.640003.318702.14520K562PUM1
C9orf16ENSG00000171159.42309.531001303.218700.825407.077606.25500K562PUS1
C9orf16ENSG00000171159.42260.589001269.924800.8319021.3366019.63420K562RBM15
C9orf16ENSG00000171159.4515.39360264.234300.963807.240005.80200K562RBM22
C9orf16ENSG00000171159.4498.11910257.679200.950802.780001.39980K562RBM34
C9orf16ENSG00000171159.4810.39970382.210701.0842017.1818014.72500K562RCC2
C9orf16ENSG00000171159.4444.44170278.095200.676302.967101.83160K562NELFE
C9orf16ENSG00000171159.4289.00470489.87700-0.761304.246802.25400K562RPS3A
C9orf16ENSG00000171159.4496.48370355.485700.481902.526101.57500K562RPS3
C9orf16ENSG00000171159.41001.73580536.614200.900403.963202.44710K562SF1
C9orf16ENSG00000171159.4786.371101101.85860-0.486706.215405.03120K562SF3A3
C9orf16ENSG00000171159.4246.73690133.983800.880806.123604.81370K562SF3B4
C9orf16ENSG00000171159.41240.40620654.156400.923004.574702.72480K562SFPQ
C9orf16ENSG00000171159.41025.03090362.305501.5003030.2319026.18430K562SRFBP1
C9orf16ENSG00000171159.4498.22430303.867000.713305.400603.04190K562SRP68
C9orf16ENSG00000171159.4423.69880270.308300.648303.194702.43950K562SRSF1
C9orf16ENSG00000171159.4675.46240343.133400.9770011.487409.21500K562SRSF4
C9orf16ENSG00000171159.4607.53540255.353101.2504017.2789014.52400K562SRSF5
C9orf16ENSG00000171159.4688.13110273.511101.3310019.5675017.36210K562TARDBP
C9orf16ENSG00000171159.4673.66060263.847701.3522022.8867020.38500K562TIA1
C9orf16ENSG00000171159.4585.16410259.051701.175504.471503.02120K562TRA2A
C9orf16ENSG00000171159.4927.29520428.036901.115209.470407.47590K562TRIM56
C9orf16ENSG00000171159.41814.676801479.569800.294403.377401.96480K562TROVE2
C9orf16ENSG00000171159.4717.269401053.50900-0.554609.271107.82120K562WDR43
C9orf16ENSG00000171159.4576.28450317.461600.860106.660604.52940K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C9orf16 is not available on ENCORE database.





18 RBPs can affect the splicing of C9orf16 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC9orf16ENSG00000171159.4chr9+130924282130925231130922592130922765130925721130926169-0.099000.000320.00836excludedK562SRSF1
SEC9orf16ENSG00000171159.4chr9+1309242821309252311309225921309227651309257211309261690.160000.006840.09380includedK562SF3B4
SEC9orf16ENSG00000171159.4chr9+130924282130925231130922592130922765130925721130926169-0.089000.000000.00002excludedK562AKAP8L
SEC9orf16ENSG00000171159.4chr9+1309242821309252311309225921309227651309257211309261690.115000.000400.03941includedK562XRCC6
SEC9orf16ENSG00000171159.4chr9+130924282130925231130922592130922765130925721130926169-0.124000.000560.06314excludedK562FMR1
SEC9orf16ENSG00000171159.4chr9+1309242821309243941309227381309227651309257211309260160.298000.000070.00282includedHepG2HNRNPK
SEC9orf16ENSG00000171159.4chr9+130924282130925231130922592130922765130925721130926169-0.077000.000070.00181excludedK562PUS1
SEC9orf16ENSG00000171159.4chr9+130924282130924623130922637130922765130925721130925825-0.105000.000490.08130excludedK562GPKOW
SEC9orf16ENSG00000171159.4chr9+1309242821309252311309225921309227651309257211309261690.612000.000000.00006includedK562U2AF1
SEC9orf16ENSG00000171159.4chr9+130924282130924394130922738130922765130925721130926016-0.082000.000320.06531excludedK562SBDS
SEC9orf16ENSG00000171159.4chr9+1309242821309252311309225921309227651309257211309261690.225000.000000.00362includedK562LARP7
SEC9orf16ENSG00000171159.4chr9+130924282130925231130922592130922765130925721130926169-0.095000.000000.00002excludedK562UTP18
SEC9orf16ENSG00000171159.4chr9+1309242821309246231309226371309227651309257211309258250.154000.006890.09247includedK562U2AF2
SEC9orf16ENSG00000171159.4chr9+130924282130925231130922592130922765130925721130926169-0.061000.000020.00132excludedK562HNRNPU
SEC9orf16ENSG00000171159.4chr9+130924282130925231130922592130922765130925721130926169-0.096000.000000.00001excludedK562RBM15
SEC9orf16ENSG00000171159.4chr9+130924282130925231130922592130922765130925721130926169-0.079000.000030.00139excludedK562AGGF1
SEC9orf16ENSG00000171159.4chr9+1309242821309243941309227381309227651309257211309260160.199000.000250.01580includedK562HNRNPK
SEC9orf16ENSG00000171159.4chr9+130924282130924623130922637130922765130925721130925825-0.088000.000040.01339excludedK562NPM1
SEC9orf16ENSG00000171159.4chr9+1309242821309252311309225921309227651309257211309261690.224000.000000.00008includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C9orf16 is not avaliable on ENCORE database.