BBC3

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	BBC3	ENSG00000105327.17	0.15	1.47	0.81	ENCSR000AEF
HepG2	BBC3	ENSG00000105327.17	6.20	1.38	3.79	ENCSR985KAT
K562	BBC3	ENSG00000105327.17	8.43	1.35	4.89	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for BBC3 is not avaliable on ENCORE database.

Proteins bound to RNA

BBC3 RNA is bound by 42 proteins.

eCLIP assay for BBC3 is not avaliable on ENCORE database.

42 proteins are bound to BBC3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	47724902	47724948	-	3'-UTR,intron-Distal	3.04382	8.31407	K562	UPF1
chr19	47724284	47724338	-	3'-UTR,intron-Distal	4.19880	4.93550	K562	FAM120A
chr19	47724391	47724412	-	3'-UTR,intron-Distal	4.04346	8.99604	K562	UPF1
chr19	47724616	47724738	-	3'-UTR,intron-Distal	3.68706	5.71477	HepG2	UPF1
chr19	47724909	47724948	-	3'-UTR,intron-Distal	5.07862	4.89579	K562	DDX6
chr19	47724910	47724962	-	3'-UTR,CDS,intron-Distal	3.66609	4.90692	K562	PUM2
chr19	47724170	47724314	-	3'-UTR,intron-Distal	5.23631	20.25536	K562	DDX6
chr19	47724904	47724960	-	3'-UTR,intron-Distal	3.96387	5.01703	K562	PUM1
chr19	47724457	47724510	-	3'-UTR,intron-Distal	4.78376	4.92383	K562	FAM120A
chr19	47724174	47724248	-	3'-UTR,intron-Distal	3.58270	5.94926	K562	DDX55
chr19	47724904	47724960	-	3'-UTR,intron-Distal	3.08047	3.77966	K562	AKAP1
chr19	47724175	47724263	-	3'-UTR,intron-Distal	3.01851	4.27810	K562	AKAP8L
chr19	47724284	47724342	-	3'-UTR,intron-Distal	3.73053	4.00430	HepG2	UPF1
chr19	47724284	47724337	-	3'-UTR,intron-Distal	6.78773	24.25313	K562	UPF1
chr19	47724631	47724729	-	3'-UTR,intron-Distal	4.48328	6.25903	K562	DDX6
chr19	47724115	47724256	-	3'-UTR,intron-Distal	6.65259	400.00000	K562	PUM2
chr19	47724660	47724709	-	3'-UTR,intron-Distal	3.82612	4.04556	K562	AKAP1
chr19	47724835	47724971	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.93299	10.45182	HepG2	UPF1
chr19	47724158	47724253	-	3'-UTR,intron-Distal	3.25297	14.38555	K562	FAM120A
chr19	47724171	47724256	-	3'-UTR,intron-Distal	3.43409	4.48692	K562	GTF2F1
chr19	47724475	47724522	-	3'-UTR,intron-Distal	3.93803	4.11185	K562	TROVE2
chr19	47724170	47724259	-	3'-UTR,intron-Distal	3.81802	3.67121	HepG2	FAM120A
chr19	47724149	47724261	-	3'-UTR,intron-Distal	7.35349	103.77788	K562	UPF1
chr19	47724605	47724701	-	3'-UTR,intron-Distal	4.34480	3.98590	HepG2	AKAP1
chr19	47734139	47734188	-	5'-UTR,intron-Distal	4.09986	7.79506	K562	AQR
chr19	47731674	47731724	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.47048	5.94114	HepG2	BUD13
chr19	47734386	47734443	-	5'-UTR,intron-Distal	4.79312	4.74403	K562	PUM1
chr19	47731652	47731730	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.14836	3.08539	K562	EWSR1
chr19	47731593	47731721	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.32409	25.45623	HepG2	CSTF2T
chr19	47731434	47731477	-	CDS,intron-Distal	3.42146	4.54145	K562	DDX6
chr19	47729888	47729939	-	CDS,intron-Distal	3.87271	6.59266	K562	DROSHA
chr19	47731422	47731491	-	CDS,intron-Distal	3.35393	8.00310	HepG2	FAM120A
chr19	47729885	47729903	-	CDS,intron-Distal	3.11502	6.12336	HepG2	CSTF2T
chr19	47729840	47729896	-	CDS,intron-Distal	4.21119	3.35417	K562	METAP2
chr19	47731418	47731470	-	CDS,intron-Distal	4.34007	14.65414	HepG2	CSTF2T
chr19	47725128	47725222	-	CDS,intron-Distal	3.30055	6.16215	HepG2	BUD13
chr19	47725144	47725217	-	CDS,intron-Distal	4.20163	7.79506	K562	AQR
chr19	47725126	47725230	-	CDS,intron-Distal	3.98923	23.39715	K562	SF3B4
chr19	47725123	47725191	-	CDS,intron-Distal	3.22581	10.72969	K562	BUD13
chr19	47729987	47730072	-	CDS,intron-Distal,intron-Proximal	3.99564	3.39008	HepG2	AQR
chr19	47731497	47731516	-	CDS,intron-Distal	3.32039	5.82968	HepG2	CSTF2T
chr19	47733567	47733644	-	intron-Distal	4.68886	8.53428	HepG2	FAM120A
chr19	47730840	47730909	-	intron-Distal	5.24493	7.31214	K562	PHF6
chr19	47732085	47732172	-	intron-Distal	3.40001	7.71150	K562	TBRG4
chr19	47733731	47733828	-	intron-Distal	4.91215	5.63082	HepG2	FASTKD2
chr19	47729620	47729679	-	intron-Distal	4.34096	7.65187	K562	DROSHA
chr19	47732832	47732931	-	intron-Distal	5.89011	44.77841	K562	CSTF2T
chr19	47731912	47731953	-	intron-Distal	3.51937	11.67491	K562	AATF
chr19	47733392	47733426	-	intron-Distal	4.55892	4.29728	HepG2	FAM120A
chr19	47732306	47732340	-	intron-Distal	3.27676	3.77853	HepG2	IGF2BP1
chr19	47730514	47730566	-	intron-Distal,intron-Proximal	5.01185	15.08124	HepG2	CSTF2T
chr19	47731174	47731259	-	intron-Distal	5.84400	4.70436	K562	EWSR1
chr19	47730823	47730857	-	intron-Distal	6.03373	19.15147	K562	CSTF2T
chr19	47732440	47732491	-	intron-Distal	5.30194	25.55630	K562	CSTF2T
chr19	47732302	47732347	-	intron-Distal	5.33337	8.34301	K562	TARDBP
chr19	47731281	47731338	-	intron-Distal,intron-Proximal	3.12364	4.56358	HepG2	FAM120A
chr19	47730687	47730834	-	intron-Distal	3.45254	4.61945	HepG2	HNRNPK
chr19	47731977	47732031	-	intron-Distal	4.20561	3.57432	K562	NONO
chr19	47733026	47733073	-	intron-Distal	4.38531	3.98448	HepG2	IGF2BP1
chr19	47733395	47733428	-	intron-Distal	5.23810	10.73431	HepG2	CSTF2T
chr19	47732629	47732683	-	intron-Distal	4.49185	5.44484	K562	RBFOX2
chr19	47731730	47731784	-	intron-Distal,intron-Proximal	5.52220	4.42197	K562	EWSR1
chr19	47732992	47733071	-	intron-Distal	4.01300	5.50856	K562	EXOSC5
chr19	47732065	47732189	-	intron-Distal	4.89720	27.32509	K562	DDX52
chr19	47732080	47732215	-	intron-Distal	4.70116	12.29104	K562	FUS
chr19	47732144	47732201	-	intron-Distal	4.68301	24.01870	HepG2	CSTF2T
chr19	47732221	47732291	-	intron-Distal	5.32361	31.90311	K562	CSTF2T
chr19	47732144	47732202	-	intron-Distal	6.34505	22.28472	K562	EIF4G2
chr19	47730013	47730080	-	intron-Distal,intron-Proximal	5.18275	4.04631	HepG2	XRN2
chr19	47733562	47733641	-	intron-Distal	3.98593	5.05880	HepG2	NKRF
chr19	47732437	47732488	-	intron-Distal	4.93132	14.52639	K562	EIF4G2
chr19	47732091	47732152	-	intron-Distal	3.59663	3.96838	HepG2	TIAL1
chr19	47732449	47732544	-	intron-Distal	4.90148	9.11071	K562	FUS
chr19	47733748	47733855	-	intron-Distal	3.09059	3.99409	K562	MTPAP
chr19	47732659	47732701	-	intron-Distal	3.35461	3.13437	HepG2	IGF2BP1
chr19	47732116	47732189	-	intron-Distal	4.37272	10.32777	HepG2	DKC1
chr19	47733916	47733947	-	intron-Distal	4.44842	3.77743	K562	DDX52
chr19	47734090	47734123	-	intron-Distal	5.60169	5.59072	K562	EIF4G2
chr19	47733578	47733624	-	intron-Distal	5.92611	5.84224	K562	EWSR1
chr19	47730343	47730377	-	intron-Distal	5.92013	17.45094	K562	CSTF2T
chr19	47733176	47733211	-	intron-Distal	5.98869	10.64584	K562	EIF4G2
chr19	47733747	47733790	-	intron-Distal	6.33577	7.68107	K562	EIF4G2
chr19	47731342	47731366	-	intron-Distal,intron-Proximal	4.40427	9.91366	HepG2	CSTF2T
chr19	47733350	47733406	-	intron-Distal	5.49711	8.89278	K562	TARDBP
chr19	47732088	47732144	-	intron-Distal	4.80302	29.42985	HepG2	CSTF2T
chr19	47732084	47732167	-	intron-Distal	5.34153	41.46899	K562	DHX30
chr19	47733770	47733830	-	intron-Distal	3.59838	3.27165	HepG2	RBFOX2
chr19	47733591	47733640	-	intron-Distal	4.28805	5.11643	K562	FUS
chr19	47733287	47733345	-	intron-Distal	4.63889	10.02593	K562	TARDBP
chr19	47731905	47731983	-	intron-Distal	4.42740	22.68994	K562	CSTF2T
chr19	47732856	47732913	-	intron-Distal	6.26655	15.33952	K562	AATF
chr19	47733752	47733792	-	intron-Distal	4.67034	4.36811	K562	FAM120A
chr19	47733387	47733436	-	intron-Distal	5.20380	27.62706	K562	CSTF2T
chr19	47731728	47731783	-	intron-Distal,intron-Proximal	4.68682	18.08780	HepG2	CSTF2T
chr19	47733887	47733943	-	intron-Distal	4.96185	19.78731	HepG2	CSTF2T
chr19	47731172	47731263	-	intron-Distal	5.65954	56.04173	K562	CSTF2T
chr19	47729757	47729785	-	intron-Distal,intron-Proximal	3.70811	8.83513	HepG2	CSTF2T
chr19	47734055	47734156	-	intron-Distal	4.81973	8.14382	K562	FUS
chr19	47732381	47732392	-	intron-Distal	4.31817	4.84106	K562	EIF4G2
chr19	47729743	47729792	-	intron-Distal,intron-Proximal	4.40633	11.53211	K562	CSTF2T
chr19	47732100	47732141	-	intron-Distal	4.45366	3.34609	K562	TARDBP
chr19	47729628	47729643	-	intron-Distal	3.61834	12.21294	K562	CSTF2T
chr19	47732070	47732146	-	intron-Distal	4.55886	9.53653	K562	FAM120A
chr19	47732981	47733039	-	intron-Distal	5.67750	41.86042	K562	CSTF2T
chr19	47732579	47732685	-	intron-Distal	5.44957	44.09246	K562	CSTF2T
chr19	47733741	47733799	-	intron-Distal	3.52182	4.24460	HepG2	IGF2BP1
chr19	47732867	47732914	-	intron-Distal	5.82438	16.34590	K562	EIF4G2
chr19	47732303	47732353	-	intron-Distal	7.10213	37.34956	K562	CSTF2T
chr19	47733222	47733287	-	intron-Distal	6.08339	13.98914	K562	TARDBP
chr19	47733787	47733860	-	intron-Distal	4.86522	27.55074	HepG2	CSTF2T
chr19	47731999	47732070	-	intron-Distal	4.37376	4.54084	K562	FUS
chr19	47732742	47732773	-	intron-Distal	3.43697	4.17049	K562	TARDBP
chr19	47733582	47733647	-	intron-Distal	4.38102	4.77477	HepG2	RBFOX2
chr19	47733177	47733222	-	intron-Distal	5.62771	9.43874	K562	TARDBP
chr19	47732373	47732443	-	intron-Distal	5.07089	14.26278	K562	TARDBP
chr19	47732144	47732199	-	intron-Distal	5.35672	44.10933	K562	CSTF2T
chr19	47733756	47733786	-	intron-Distal	3.09503	7.36733	K562	DROSHA
chr19	47731927	47731977	-	intron-Distal	4.34093	4.08332	K562	NONO
chr19	47733400	47733436	-	intron-Distal	5.62900	11.01464	K562	AATF
chr19	47731286	47731344	-	intron-Distal,intron-Proximal	3.16762	3.18404	K562	FUS
chr19	47733591	47733646	-	intron-Distal	4.22476	10.28049	K562	FASTKD2
chr19	47733548	47733584	-	intron-Distal	5.75818	29.26691	K562	CSTF2T
chr19	47733593	47733645	-	intron-Distal	4.26002	4.37414	K562	RBFOX2
chr19	47733721	47733848	-	intron-Distal	3.71372	13.97245	HepG2	FAM120A
chr19	47733576	47733645	-	intron-Distal	4.61450	23.78260	HepG2	CSTF2T
chr19	47729643	47729673	-	intron-Distal	4.01056	13.70054	K562	CSTF2T
chr19	47729106	47729160	-	intron-Distal	3.81603	3.06084	HepG2	HNRNPK
chr19	47733518	47733556	-	intron-Distal	3.05637	3.10770	K562	RBFOX2
chr19	47733549	47733576	-	intron-Distal	3.46930	9.05327	HepG2	CSTF2T
chr19	47733736	47733772	-	intron-Distal	5.49890	21.20050	K562	CSTF2T
chr19	47730514	47730564	-	intron-Distal,intron-Proximal	3.44801	4.23643	HepG2	XRN2
chr19	47732298	47732358	-	intron-Distal	6.20547	6.69377	HepG2	DKC1
chr19	47732150	47732197	-	intron-Distal	3.54012	4.16875	HepG2	SRSF7
chr19	47731915	47731955	-	intron-Distal	3.64183	5.44645	K562	TBRG4
chr19	47733727	47733830	-	intron-Distal	3.37140	14.70876	K562	AKAP8L
chr19	47732363	47732420	-	intron-Distal	5.81409	31.25667	K562	CSTF2T
chr19	47730699	47730784	-	intron-Distal	3.90637	23.20167	K562	CSTF2T
chr19	47730352	47730402	-	intron-Distal	3.91472	3.35564	K562	FUS
chr19	47732880	47732915	-	intron-Distal	5.97968	5.91341	K562	PHF6
chr19	47732855	47732919	-	intron-Distal	4.69901	4.69957	HepG2	SRSF7
chr19	47732095	47732144	-	intron-Distal	3.06558	12.56782	K562	DROSHA
chr19	47731901	47731980	-	intron-Distal	5.40496	15.00295	K562	DDX52
chr19	47732310	47732339	-	intron-Distal	4.82173	7.62986	K562	EIF4G2
chr19	47732212	47732298	-	intron-Distal	6.00958	15.37751	K562	TARDBP
chr19	47729631	47729674	-	intron-Distal	4.63255	10.86370	HepG2	CSTF2T
chr19	47732871	47732925	-	intron-Distal	3.21835	4.30514	K562	FUS
chr19	47733578	47733623	-	intron-Distal	6.15368	13.81256	K562	DHX30
chr19	47733730	47733787	-	intron-Distal	5.29982	26.03619	HepG2	CSTF2T
chr19	47732074	47732160	-	intron-Distal	3.63647	6.01518	K562	RBFOX2
chr19	47733573	47733641	-	intron-Distal	3.71531	17.17822	K562	AATF
chr19	47732749	47732785	-	intron-Distal	3.21561	9.36349	K562	CSTF2T
chr19	47733518	47733545	-	intron-Distal	4.21898	7.82429	K562	DHX30
chr19	47732089	47732145	-	intron-Distal	3.17424	5.26596	HepG2	IGF2BP1
chr19	47732509	47732614	-	intron-Distal	6.07589	13.70780	K562	TARDBP
chr19	47733242	47733371	-	intron-Distal	4.37968	5.00403	K562	IGF2BP1
chr19	47732076	47732145	-	intron-Distal	5.21560	3.98311	K562	IGF2BP1
chr19	47732376	47732449	-	intron-Distal	3.25497	5.60791	K562	FUS
chr19	47733508	47733581	-	intron-Distal	4.09653	15.35352	K562	DROSHA
chr19	47733750	47733854	-	intron-Distal	3.01716	5.46345	K562	FUS
chr19	47731044	47731085	-	intron-Distal	4.40795	6.02411	K562	PHF6
chr19	47732992	47733081	-	intron-Distal	4.86193	8.34312	K562	FUS
chr19	47732612	47732688	-	intron-Distal	4.35924	6.09551	K562	FUS
chr19	47729528	47729573	-	intron-Distal	5.66124	6.64255	K562	DHX30
chr19	47731914	47731981	-	intron-Distal	4.54430	3.15535	K562	EWSR1
chr19	47732524	47732579	-	intron-Distal	4.88806	23.49059	K562	CSTF2T
chr19	47730252	47730283	-	intron-Distal	3.58710	6.96229	HepG2	CSTF2T
chr19	47732614	47732669	-	intron-Distal	4.62244	8.23540	K562	TARDBP
chr19	47732319	47732336	-	intron-Distal	4.64596	4.57196	K562	PHF6
chr19	47732877	47732931	-	intron-Distal	4.73482	7.60148	HepG2	DKC1
chr19	47731964	47732028	-	intron-Distal	5.80741	14.24310	K562	EIF4G2
chr19	47733039	47733068	-	intron-Distal	4.92534	22.78366	K562	CSTF2T
chr19	47732873	47732916	-	intron-Distal	3.83356	7.16619	K562	DHX30
chr19	47733472	47733548	-	intron-Distal	6.28386	45.73182	K562	CSTF2T
chr19	47733790	47733849	-	intron-Distal	4.89517	11.27268	K562	EIF4G2
chr19	47732145	47732204	-	intron-Distal	5.13197	3.98716	K562	IGF2BP1
chr19	47733032	47733102	-	intron-Distal	3.12826	3.09632	K562	XRCC6
chr19	47733385	47733446	-	intron-Distal	4.31753	4.50934	HepG2	RBFOX2
chr19	47732085	47732187	-	intron-Distal	4.12870	3.72287	K562	EIF3G
chr19	47733584	47733641	-	intron-Distal	4.58011	25.41604	K562	CSTF2T
chr19	47732869	47732914	-	intron-Distal	5.29899	6.14547	K562	TBRG4
chr19	47731035	47731083	-	intron-Distal	4.78662	11.63297	HepG2	CSTF2T
chr19	47732818	47732842	-	intron-Distal	3.68495	4.17049	K562	TARDBP
chr19	47731193	47731247	-	intron-Distal	4.28518	6.38441	HepG2	FAM120A
chr19	47733275	47733341	-	intron-Distal	4.76245	25.05473	K562	CSTF2T
chr19	47732078	47732150	-	intron-Distal	6.85128	10.18369	K562	EWSR1
chr19	47730866	47730912	-	intron-Distal	4.56251	10.15405	HepG2	CSTF2T
chr19	47732304	47732352	-	intron-Distal	5.20180	4.55417	K562	TBRG4
chr19	47732506	47732569	-	intron-Distal	6.25219	7.30436	HepG2	DKC1
chr19	47730029	47730098	-	intron-Distal,intron-Proximal	4.20185	17.38656	HepG2	CSTF2T
chr19	47732742	47732789	-	intron-Distal	5.12998	11.73806	K562	EIF4G2
chr19	47734066	47734152	-	intron-Distal	4.13566	16.76815	HepG2	CSTF2T
chr19	47734062	47734148	-	intron-Distal	5.11997	23.40170	K562	CSTF2T
chr19	47733899	47733938	-	intron-Distal	4.89417	6.02361	K562	EIF4G2
chr19	47732741	47732798	-	intron-Distal	4.15743	4.93241	K562	FUS
chr19	47732858	47732928	-	intron-Distal	5.13500	16.07949	K562	TARDBP
chr19	47731932	47731968	-	intron-Distal	3.98503	4.06897	HepG2	FAM120A
chr19	47731923	47731999	-	intron-Distal	3.78132	5.83933	K562	FUS
chr19	47732642	47732695	-	intron-Distal	5.15597	14.52639	K562	EIF4G2
chr19	47733966	47734044	-	intron-Distal	5.25298	18.34489	HepG2	CSTF2T
chr19	47729742	47729806	-	intron-Distal,intron-Proximal	4.20641	5.67935	K562	AATF
chr19	47733789	47733834	-	intron-Distal	5.83820	9.76558	HepG2	DKC1
chr19	47732014	47732071	-	intron-Distal	5.19881	26.11871	K562	CSTF2T
chr19	47733175	47733204	-	intron-Distal	4.88910	7.29293	K562	DDX52
chr19	47733794	47733851	-	intron-Distal	3.72175	4.23643	HepG2	XRN2
chr19	47731266	47731345	-	intron-Distal,intron-Proximal	5.17124	38.80400	K562	CSTF2T
chr19	47732084	47732176	-	intron-Distal	5.75647	66.13168	K562	AATF
chr19	47733759	47733846	-	intron-Distal	4.71776	18.09364	K562	DDX52
chr19	47733517	47733573	-	intron-Distal	4.90340	12.36140	K562	AATF
chr19	47733898	47733944	-	intron-Distal	3.73640	5.60571	HepG2	FAM120A
chr19	47733006	47733121	-	intron-Distal	6.04903	15.92460	K562	TARDBP
chr19	47731189	47731223	-	intron-Distal	4.58005	3.26739	K562	FAM120A
chr19	47732443	47732477	-	intron-Distal	5.12244	6.49093	K562	TARDBP
chr19	47733944	47733987	-	intron-Distal	4.08055	7.49772	K562	TIA1
chr19	47731282	47731342	-	intron-Distal,intron-Proximal	6.39694	24.83193	HepG2	CSTF2T
chr19	47732001	47732069	-	intron-Distal	6.00394	6.99055	K562	EWSR1
chr19	47731193	47731253	-	intron-Distal	3.88571	17.50746	HepG2	CSTF2T
chr19	47733772	47733839	-	intron-Distal	4.40297	25.44379	K562	CSTF2T
chr19	47733860	47733887	-	intron-Distal	4.38788	8.66215	HepG2	CSTF2T
chr19	47729622	47729675	-	intron-Distal	4.51351	10.04678	K562	DHX30
chr19	47731796	47731842	-	intron-Distal,intron-Proximal	5.92409	16.68942	HepG2	CSTF2T
chr19	47733226	47733275	-	intron-Distal	5.13246	28.08305	K562	CSTF2T
chr19	47730066	47730097	-	intron-Distal,intron-Proximal	3.31395	10.28834	K562	CSTF2T
chr19	47733390	47733427	-	intron-Distal	3.90180	7.71366	K562	DROSHA
chr19	47732012	47732065	-	intron-Distal	5.20524	7.29293	K562	DDX52
chr19	47730740	47730778	-	intron-Distal	4.43161	9.42344	HepG2	CSTF2T
chr19	47733176	47733226	-	intron-Distal	5.02960	26.92118	K562	CSTF2T
chr19	47733875	47733941	-	intron-Distal	4.55587	5.00766	K562	EWSR1
chr19	47732081	47732142	-	intron-Distal	4.34292	5.34749	HepG2	FAM120A
chr19	47731727	47731808	-	intron-Distal,intron-Proximal	4.20214	10.29996	K562	TIA1
chr19	47730857	47730919	-	intron-Distal	5.34782	32.45917	K562	CSTF2T
chr19	47730812	47730838	-	intron-Distal	3.48993	7.20706	HepG2	CSTF2T
chr19	47732150	47732200	-	intron-Distal	5.84605	4.98766	K562	EWSR1
chr19	47733799	47733852	-	intron-Distal	3.63967	3.77798	HepG2	IGF2BP1
chr19	47733578	47733604	-	intron-Distal	4.84816	5.24677	K562	PHF6
chr19	47733599	47733623	-	intron-Distal	3.04475	4.80614	K562	DDX52
chr19	47733510	47733549	-	intron-Distal	3.35371	7.92456	HepG2	CSTF2T
chr19	47732877	47732906	-	intron-Distal	3.17504	6.57490	HepG2	CSTF2T
chr19	47733746	47733846	-	intron-Distal	4.40039	14.45048	K562	AATF
chr19	47730866	47730908	-	intron-Distal	4.52076	6.15069	K562	DHX30
chr19	47732623	47732682	-	intron-Distal	5.42825	4.83371	K562	EFTUD2
chr19	47731857	47731904	-	intron-Distal	4.20761	11.49466	HepG2	CSTF2T
chr19	47732083	47732155	-	intron-Distal	4.13991	8.46624	K562	GEMIN5
chr19	47733460	47733499	-	intron-Distal	4.64171	8.22413	K562	GEMIN5
chr19	47733289	47733347	-	intron-Distal	3.33307	3.84724	HepG2	IGF2BP1
chr19	47731286	47731333	-	intron-Distal,intron-Proximal	5.96461	8.82406	K562	FASTKD2
chr19	47731285	47731330	-	intron-Distal,intron-Proximal	4.32802	4.88396	K562	DROSHA
chr19	47730824	47730895	-	intron-Distal	4.36160	6.13255	K562	FUS
chr19	47732089	47732149	-	intron-Distal	3.42721	5.81979	K562	DDX6
chr19	47733291	47733371	-	intron-Distal	3.63845	5.62613	K562	FUS
chr19	47733901	47733948	-	intron-Distal	4.32787	15.38753	K562	CSTF2T
chr19	47733588	47733645	-	intron-Distal	3.23375	7.18154	K562	GEMIN5
chr19	47733023	47733091	-	intron-Distal	3.29205	5.84375	K562	RBFOX2
chr19	47730846	47730895	-	intron-Distal	4.19935	8.45154	K562	FASTKD2
chr19	47729625	47729681	-	intron-Distal	4.07836	5.53827	K562	DDX52
chr19	47732113	47732178	-	intron-Distal	3.10079	7.02429	K562	FASTKD2
chr19	47733003	47733071	-	intron-Distal	5.65274	26.22746	K562	EIF4G2
chr19	47732081	47732144	-	intron-Distal	6.26615	66.75525	K562	CSTF2T
chr19	47733745	47733842	-	intron-Distal	5.52004	40.21694	K562	DHX30
chr19	47732734	47732789	-	intron-Distal	5.01475	8.29844	HepG2	DKC1
chr19	47730529	47730548	-	intron-Distal,intron-Proximal	3.48323	7.89276	K562	CSTF2T
chr19	47732853	47732893	-	intron-Distal	3.90622	3.52163	HepG2	IGF2BP1
chr19	47732059	47732148	-	intron-Distal	4.89471	20.84058	K562	PHF6
chr19	47733537	47733577	-	intron-Distal	3.03416	3.93430	K562	FUS
chr19	47733778	47733828	-	intron-Distal	3.51787	4.72439	K562	TBRG4
chr19	47733510	47733528	-	intron-Distal	3.94842	3.84192	K562	DDX52
chr19	47732148	47732202	-	intron-Distal	3.34016	5.26596	HepG2	IGF2BP1
chr19	47733396	47733430	-	intron-Distal	4.28323	7.79910	K562	DDX52
chr19	47733741	47733825	-	intron-Distal	5.64295	4.70436	K562	EWSR1
chr19	47730834	47730889	-	intron-Distal	3.97055	8.77838	K562	DROSHA
chr19	47732306	47732351	-	intron-Distal	4.46907	4.36861	HepG2	SRSF7
chr19	47732148	47732191	-	intron-Distal	3.99547	6.12422	HepG2	FAM120A
chr19	47731025	47731085	-	intron-Distal	4.05699	20.59007	K562	CSTF2T
chr19	47733003	47733055	-	intron-Distal	3.08055	5.94675	K562	TIA1
chr19	47733501	47733620	-	intron-Distal	4.42589	9.14423	K562	NONO
chr19	47733903	47733940	-	intron-Distal	3.62004	4.95734	K562	MTPAP
chr19	47732073	47732144	-	intron-Distal	5.44969	27.75830	K562	EIF4G2
chr19	47733589	47733652	-	intron-Distal	6.98020	21.39730	K562	EIF4G2
chr19	47732641	47732690	-	intron-Distal	4.07482	3.06243	HepG2	SRSF7
chr19	47731907	47731996	-	intron-Distal	3.80383	18.24982	HepG2	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for BBC3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for BBC3 is not available on ENCORE database.
119 RBPs can affect the levels of BBC3.

The Knockdown/knockout RNA-Seq assay for BBC3 is not available on ENCORE database.

119 RBPs can affect the gene expression of BBC3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
BBC3	ENSG00000105327.11	336.93440	218.09240	0.62740	2.18750	1.34550	HepG2	ABCF1
BBC3	ENSG00000105327.11	473.41270	280.35010	0.75580	4.52420	3.78320	HepG2	ACO1
BBC3	ENSG00000105327.11	365.63360	213.33830	0.77720	2.83650	1.78610	HepG2	AKAP8
BBC3	ENSG00000105327.11	496.01460	281.66240	0.81630	9.67920	8.35060	HepG2	AKAP8L
BBC3	ENSG00000105327.11	431.83370	182.83020	1.23990	11.67570	10.14680	HepG2	ASCC1
BBC3	ENSG00000105327.11	250.12170	89.57960	1.48130	7.41230	5.83740	HepG2	BCCIP
BBC3	ENSG00000105327.11	218.23860	84.85610	1.36270	9.11830	8.10940	HepG2	BOP1
BBC3	ENSG00000105327.11	342.36640	207.33730	0.72350	3.70820	2.56660	HepG2	CCAR1
BBC3	ENSG00000105327.11	467.59030	280.28330	0.73830	8.39730	7.36140	HepG2	CKAP4
BBC3	ENSG00000105327.11	143.84750	77.89780	0.88480	3.17070	2.43950	HepG2	CPSF6
BBC3	ENSG00000105327.11	290.32650	179.49540	0.69360	3.53470	2.28890	HepG2	CPSF7
BBC3	ENSG00000105327.11	171.22710	55.27950	1.63100	8.92860	7.18230	HepG2	CSTF2
BBC3	ENSG00000105327.11	197.53870	94.36840	1.06570	3.53450	2.00840	HepG2	DDX52
BBC3	ENSG00000105327.11	1145.45710	181.91460	2.65450	37.34330	35.46090	HepG2	DDX6
BBC3	ENSG00000105327.11	180.25030	56.24670	1.68010	5.24670	4.30670	HepG2	DNAJC21
BBC3	ENSG00000105327.11	136.71260	55.75860	1.29380	7.52010	6.51630	HepG2	DNAJC2
BBC3	ENSG00000105327.11	497.62750	188.10240	1.40340	2.46860	1.81700	HepG2	EIF4B
BBC3	ENSG00000105327.11	942.88070	360.42660	1.38730	33.85040	32.16290	HepG2	ETF1
BBC3	ENSG00000105327.11	508.52470	273.94690	0.89230	8.23950	6.81270	HepG2	EWSR1
BBC3	ENSG00000105327.11	84.12190	152.74810	-0.86060	2.75720	1.97310	HepG2	FUBP3
BBC3	ENSG00000105327.11	443.37290	194.97850	1.18510	6.10770	5.10460	HepG2	FXR1
BBC3	ENSG00000105327.11	173.07320	90.15120	0.94090	3.47790	2.32660	HepG2	GNB2L1
BBC3	ENSG00000105327.11	163.56430	88.29010	0.88940	2.06610	1.50830	HepG2	GPKOW
BBC3	ENSG00000105327.11	385.24970	176.31020	1.12760	3.44230	2.19830	HepG2	GRSF1
BBC3	ENSG00000105327.11	428.29030	161.40130	1.40780	4.93110	3.04800	HepG2	HNRNPA0
BBC3	ENSG00000105327.11	351.64370	157.56660	1.15810	3.70560	2.07800	HepG2	HNRNPAB
BBC3	ENSG00000105327.11	167.38780	63.16640	1.40590	3.77960	2.97950	HepG2	HNRNPC
BBC3	ENSG00000105327.11	258.03620	136.34080	0.92030	7.05830	5.98190	HepG2	HNRNPF
BBC3	ENSG00000105327.11	286.43080	183.25450	0.64420	3.14320	2.39990	HepG2	HNRNPK
BBC3	ENSG00000105327.11	203.38760	124.59600	0.70690	4.07610	3.27050	HepG2	HNRNPL
BBC3	ENSG00000105327.11	209.49430	62.74860	1.73920	16.01820	14.65760	HepG2	HNRNPU
BBC3	ENSG00000105327.11	279.98880	134.25670	1.06030	5.22130	4.25950	HepG2	IGF2BP1
BBC3	ENSG00000105327.11	406.77920	183.74140	1.14650	9.90720	8.71500	HepG2	IGF2BP2
BBC3	ENSG00000105327.11	376.21450	172.54840	1.12450	4.28170	3.06130	HepG2	IGF2BP3
BBC3	ENSG00000105327.11	121.23000	64.09510	0.91940	3.99760	3.13270	HepG2	ILF2
BBC3	ENSG00000105327.11	459.53530	181.82280	1.33750	5.68670	3.89240	HepG2	KHDRBS1
BBC3	ENSG00000105327.11	347.37280	256.27150	0.43870	2.91080	1.87090	HepG2	KIF1C
BBC3	ENSG00000105327.11	495.76220	219.10540	1.17790	10.31350	8.71620	HepG2	LARP4
BBC3	ENSG00000105327.11	166.83350	92.71710	0.84740	3.00720	1.74050	HepG2	LIN28B
BBC3	ENSG00000105327.11	355.82320	195.04720	0.86720	5.73490	4.80240	HepG2	MAGOH
BBC3	ENSG00000105327.11	361.49410	196.11410	0.88220	5.39270	4.53650	HepG2	MATR3
BBC3	ENSG00000105327.11	402.32920	135.63430	1.56860	5.84240	4.73790	HepG2	NOL12
BBC3	ENSG00000105327.11	170.11170	80.99150	1.07050	2.84690	1.73780	HepG2	NONO
BBC3	ENSG00000105327.11	605.76110	174.13460	1.79840	8.97220	7.33390	HepG2	PABPC1
BBC3	ENSG00000105327.11	106.49130	62.10680	0.77780	2.58210	1.76120	HepG2	PARN
BBC3	ENSG00000105327.11	334.91990	180.30120	0.89330	8.19880	7.24470	HepG2	PCBP1
BBC3	ENSG00000105327.11	185.55040	55.96620	1.72910	14.06990	12.47980	HepG2	PPIL4
BBC3	ENSG00000105327.11	279.09390	183.47130	0.60510	3.35350	2.76330	HepG2	PTBP1
BBC3	ENSG00000105327.11	236.78530	129.47750	0.87080	5.18630	4.40220	HepG2	PUF60
BBC3	ENSG00000105327.11	326.13030	137.44910	1.24650	14.93840	13.78780	HepG2	PUM1
BBC3	ENSG00000105327.11	323.89980	137.34680	1.23760	11.87160	10.53830	HepG2	PUM2
BBC3	ENSG00000105327.11	359.21820	249.16790	0.52760	2.81280	1.95020	HepG2	RBM15
BBC3	ENSG00000105327.11	1014.95550	301.24760	1.75230	49.74570	48.08100	HepG2	RBM22
BBC3	ENSG00000105327.11	358.58980	180.32750	0.99160	2.44270	1.80580	HepG2	RBM25
BBC3	ENSG00000105327.11	263.76520	106.57770	1.30720	7.15960	5.55570	HepG2	RBM27
BBC3	ENSG00000105327.11	383.75220	184.00630	1.06030	3.02430	1.41130	HepG2	RBM47
BBC3	ENSG00000105327.11	210.65280	86.54670	1.28320	5.84720	4.30000	HepG2	RCC2
BBC3	ENSG00000105327.11	383.94390	204.17930	0.91100	8.32560	7.47910	HepG2	NELFE
BBC3	ENSG00000105327.11	297.81680	190.17740	0.64700	4.15720	3.42240	HepG2	RECQL
BBC3	ENSG00000105327.11	300.29220	146.87400	1.03170	2.07340	1.47230	HepG2	RPLP0
BBC3	ENSG00000105327.11	160.28050	88.89320	0.85040	2.94990	2.31900	HepG2	RPS19
BBC3	ENSG00000105327.11	277.26960	98.27600	1.49630	10.69840	9.21100	HepG2	RPS2
BBC3	ENSG00000105327.11	238.30550	100.33670	1.24790	7.17480	5.46090	HepG2	RPS5
BBC3	ENSG00000105327.11	161.56070	67.11110	1.26740	2.30840	1.58310	HepG2	RRP9
BBC3	ENSG00000105327.11	127.11250	55.87870	1.18560	5.76590	4.88900	HepG2	SAFB2
BBC3	ENSG00000105327.11	363.92900	180.38590	1.01250	2.65800	1.37240	HepG2	SART3
BBC3	ENSG00000105327.11	434.37930	201.96790	1.10470	3.18320	2.45850	HepG2	SF3A3
BBC3	ENSG00000105327.11	197.36800	83.39130	1.24280	7.11560	6.02950	HepG2	SF3B1
BBC3	ENSG00000105327.11	362.25850	191.00290	0.92330	8.50410	7.55600	HepG2	SF3B4
BBC3	ENSG00000105327.11	166.92750	37.95650	2.13670	3.45870	1.79140	HepG2	SFPQ
BBC3	ENSG00000105327.11	162.04130	65.16120	1.31420	8.33290	7.31150	HepG2	SMN1
BBC3	ENSG00000105327.11	200.97400	102.29790	0.97410	3.12240	2.09780	HepG2	SMNDC1
BBC3	ENSG00000105327.11	1087.08190	340.24400	1.67570	55.77790	54.27270	HepG2	SRFBP1
BBC3	ENSG00000105327.11	120.00340	199.37150	-0.73240	3.35510	2.84730	HepG2	SRSF1
BBC3	ENSG00000105327.11	194.08500	89.75080	1.11260	4.96140	3.58340	HepG2	SRSF3
BBC3	ENSG00000105327.11	354.72160	127.84380	1.47220	19.09160	17.65280	HepG2	SRSF5
BBC3	ENSG00000105327.11	287.74050	133.95070	1.10300	10.49700	9.29160	HepG2	SRSF7
BBC3	ENSG00000105327.11	327.00300	162.20450	1.01140	10.35140	9.40260	HepG2	SRSF9
BBC3	ENSG00000105327.11	467.52360	231.45820	1.01420	6.27460	4.44740	HepG2	SSRP1
BBC3	ENSG00000105327.11	494.09500	166.78450	1.56670	10.80040	8.49630	HepG2	STIP1
BBC3	ENSG00000105327.11	249.43840	145.39050	0.77870	3.96220	3.24170	HepG2	SUCLG1
BBC3	ENSG00000105327.11	254.68770	148.60360	0.77720	4.34720	3.18260	HepG2	SUPT6H
BBC3	ENSG00000105327.11	283.03260	87.66670	1.69080	8.44550	7.36850	HepG2	SUPV3L1
BBC3	ENSG00000105327.11	167.75680	58.74150	1.51380	7.18680	5.71030	HepG2	TFIP11
BBC3	ENSG00000105327.11	224.63570	60.96130	1.88150	6.80750	6.08650	HepG2	TIAL1
BBC3	ENSG00000105327.11	193.82960	61.51770	1.65560	5.58960	4.83990	HepG2	TRIM56
BBC3	ENSG00000105327.11	275.35060	126.49910	1.12200	3.96950	2.90050	HepG2	TUFM
BBC3	ENSG00000105327.11	363.62470	188.30910	0.94920	5.59470	4.71750	HepG2	U2AF1
BBC3	ENSG00000105327.11	196.48230	40.49420	2.27850	6.42210	4.83920	HepG2	U2AF2
BBC3	ENSG00000105327.11	289.94750	133.90060	1.11450	2.91840	2.06000	HepG2	UBE2L3
BBC3	ENSG00000105327.11	268.87540	179.11430	0.58600	3.70490	2.91590	HepG2	UPF1
BBC3	ENSG00000105327.11	334.74890	171.61290	0.96380	2.42360	1.40770	HepG2	XPO5
BBC3	ENSG00000105327.11	200.37580	86.29920	1.21520	4.67800	3.74410	HepG2	XRN2
BBC3	ENSG00000105327.11	256.01340	106.65120	1.26320	11.66780	10.44780	HepG2	ZC3H8
BBC3	ENSG00000105327.11	1152.27270	606.83740	0.92500	9.65430	8.67620	K562	AGGF1
BBC3	ENSG00000105327.11	1155.43370	666.93080	0.79270	4.63000	3.27790	K562	AKAP8
BBC3	ENSG00000105327.11	1168.81040	631.46850	0.88820	5.16700	4.26190	K562	AKAP8L
BBC3	ENSG00000105327.11	909.79410	662.61280	0.45730	2.62860	1.73970	K562	ATP5C1
BBC3	ENSG00000105327.11	213.94630	136.39500	0.64940	2.84080	1.50850	K562	BCCIP
BBC3	ENSG00000105327.11	230.56790	131.82160	0.80650	4.78610	3.50530	K562	BCLAF1
BBC3	ENSG00000105327.11	221.88070	100.00640	1.14960	7.11220	5.30370	K562	CSTF2
BBC3	ENSG00000105327.11	101.00680	244.98210	-1.27820	3.23580	2.53930	K562	DDX47
BBC3	ENSG00000105327.11	468.12450	329.19450	0.50790	4.11180	2.42470	K562	DDX6
BBC3	ENSG00000105327.11	291.49160	168.67830	0.78910	2.32980	1.66130	K562	EIF2S2
BBC3	ENSG00000105327.11	52.46720	110.77990	-1.07820	2.87590	1.84880	K562	EIF3A
BBC3	ENSG00000105327.11	447.68330	296.11480	0.59620	3.48330	2.00360	K562	EWSR1
BBC3	ENSG00000105327.11	176.41960	80.21710	1.13690	6.38170	5.05700	K562	FIP1L1
BBC3	ENSG00000105327.11	88.20740	352.78190	-1.99980	27.79960	26.01100	K562	FXR1
BBC3	ENSG00000105327.11	230.32710	141.33590	0.70450	3.78130	2.07600	K562	G3BP1
BBC3	ENSG00000105327.11	26.08430	68.58030	-1.39460	3.75260	2.90050	K562	G3BP2
BBC3	ENSG00000105327.11	666.73920	396.51860	0.74960	3.49870	2.07650	K562	HNRNPA2B1
BBC3	ENSG00000105327.11	194.35480	115.56310	0.74990	3.16750	2.53400	K562	HNRNPC
BBC3	ENSG00000105327.11	570.24320	439.03840	0.37710	2.70880	1.82570	K562	HNRNPU
BBC3	ENSG00000105327.11	253.86130	108.74470	1.22300	8.56850	7.18560	K562	HSPD1
BBC3	ENSG00000105327.11	447.41810	147.93420	1.59660	9.27840	6.99430	K562	IGF2BP2
BBC3	ENSG00000105327.11	291.24580	150.42330	0.95310	7.49820	5.41930	K562	IGF2BP3
BBC3	ENSG00000105327.11	247.53870	155.35970	0.67190	3.04990	2.16710	K562	MAGOH
BBC3	ENSG00000105327.11	911.81490	641.48090	0.50720	3.21740	2.03280	K562	MAK16
BBC3	ENSG00000105327.11	93.30830	159.16540	-0.77040	2.88040	1.61890	K562	PABPC1
BBC3	ENSG00000105327.11	592.50370	347.01790	0.77170	3.48660	2.33870	K562	PABPN1
BBC3	ENSG00000105327.11	285.45710	151.91710	0.90990	6.94520	4.75380	K562	PCBP1
BBC3	ENSG00000105327.11	94.37160	176.35540	-0.90210	3.74710	2.77810	K562	PCBP3
BBC3	ENSG00000105327.11	70.14110	135.26120	-0.94740	3.84450	2.89290	K562	POLR2G
BBC3	ENSG00000105327.11	219.83040	91.07540	1.27120	4.72630	3.61200	K562	PPIG
BBC3	ENSG00000105327.11	666.18700	412.73910	0.69060	2.81860	1.36180	K562	PPP1R8
BBC3	ENSG00000105327.11	123.51380	237.02380	-0.94040	3.91100	1.69510	K562	PRPF6
BBC3	ENSG00000105327.11	172.21940	103.63450	0.73260	2.27440	1.46250	K562	PSIP1
BBC3	ENSG00000105327.11	186.19360	415.74030	-1.15890	2.40580	1.64670	K562	PUF60
BBC3	ENSG00000105327.11	242.04510	144.68130	0.74230	4.25880	3.18800	K562	RBM22
BBC3	ENSG00000105327.11	166.84220	310.62880	-0.89670	2.19120	1.45820	K562	SF3A3
BBC3	ENSG00000105327.11	148.52890	71.25980	1.05950	5.44590	4.21930	K562	SF3B4
BBC3	ENSG00000105327.11	350.38130	139.80080	1.32550	13.63090	11.13830	K562	SRSF5
BBC3	ENSG00000105327.11	45.11720	135.68350	-1.58850	8.79460	7.33070	K562	SYNCRIP
BBC3	ENSG00000105327.11	303.09730	149.75240	1.01710	7.76570	6.50640	K562	TARDBP
BBC3	ENSG00000105327.11	443.79130	144.46030	1.61910	17.32090	15.12020	K562	TIA1
BBC3	ENSG00000105327.11	379.41760	141.82340	1.41960	15.07920	11.91500	K562	TRA2A
BBC3	ENSG00000105327.11	182.83610	105.99130	0.78650	3.34300	2.28400	K562	TRIM56
BBC3	ENSG00000105327.11	157.07480	296.95990	-0.91880	2.64320	1.81470	K562	WDR43
BBC3	ENSG00000105327.11	115.31450	223.28020	-0.95330	3.92230	1.96050	K562	XRCC6
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for BBC3 is not available on ENCORE database.

1 RBPs can affect the splicing of BBC3 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	BBC3	ENSG00000105327.11	chr19	-	47729820	47730011			47724080	47725175	47734185	47734451	-0.11400	0.00324	0.06616	excluded	K562	RBM15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

BBC3

General Information

Functions

Localization

Domains (AlphaFold: BBC3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for BBC3 is not avaliable on ENCORE database.

42 proteins are bound to BBC3 RNA:

eCLIP assay for BBC3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for BBC3 is not available on ENCORE database.

119 RBPs can affect the gene expression of BBC3 :

The Knockdown/knockout RNA-Seq assay for BBC3 is not available on ENCORE database.

1 RBPs can affect the splicing of BBC3 :

The Knockdown/knockout RNA-Seq assay for BBC3 is not avaliable on ENCORE database.