TRANK1

General Information

Gene Name       : TRANK1
Gene ID             : ENSG00000168016.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRANK1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRANK1ENSG00000168016.141.991.621.81ENCSR000AEF
HepG2TRANK1ENSG00000168016.140.160.160.16ENCSR985KAT
K562TRANK1ENSG00000168016.141.511.381.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRANK1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRANK1 RNA is bound by 8 proteins.  







eCLIP assay for TRANK1 is not avaliable on ENCORE database.





8 proteins are bound to TRANK1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr33686946336869525-3'-UTR,intron-Distal4.434184.07810K562UPF1
chr33694473436944766-5'-UTR,CDS,intron-Distal3.019564.35865K562YBX3
chr33687422036874334-CDS,intron-Distal3.158064.26316K562FXR1
chr33689879436898885-CDS,intron-Distal3.598034.06757K562UCHL5
chr33687988936879975-CDS,intron-Distal3.012753.24816K562YBX3
chr33687310436873145-CDS,intron-Distal5.296037.36769K562FMR1
chr33689900936899092-CDS,intron-Distal4.507134.96063K562LIN28B
chr33689745336897618-CDS,intron-Distal5.056569.56355K562YBX3
chr33687248436872561-CDS,intron-Distal6.4681824.09512K562LIN28B
chr33687451336874591-CDS,intron-Distal3.849697.44026K562YBX3
chr33689795836898037-CDS,intron-Distal4.712155.24786K562FXR2
chr33689723236897285-CDS,intron-Distal3.241323.12941K562UCHL5
chr33689367236893795-CDS,intron-Distal3.136734.28738K562FXR1
chr33687303236873146-CDS,intron-Distal5.667378.89821K562FXR2
chr33687451136874586-CDS,intron-Distal3.924064.48707K562FXR1
chr33694981336949841-intron-Distal3.585605.57640K562YBX3
chr33691769036917740-intron-Distal4.503335.31505K562HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRANK1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRANK1 is not available on ENCORE database.

  • 132 RBPs can affect the levels of TRANK1.  








The Knockdown/knockout RNA-Seq assay for TRANK1 is not available on ENCORE database.





132 RBPs can affect the gene expression of TRANK1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRANK1ENSG00000168016.9101.5291035.687201.508304.553203.36670HepG2ABCF1
TRANK1ENSG00000168016.949.7610018.654801.415403.124602.06950HepG2ADAR
TRANK1ENSG00000168016.9146.9533079.892200.879102.856802.31640HepG2AKAP1
TRANK1ENSG00000168016.9180.3756081.561801.144905.495004.05010HepG2AKAP8
TRANK1ENSG00000168016.9137.3666028.441102.271907.432406.24440HepG2AKAP8L
TRANK1ENSG00000168016.9172.4747066.106901.383407.416206.15910HepG2ASCC1
TRANK1ENSG00000168016.998.0686040.933801.260403.074702.04410HepG2CCAR1
TRANK1ENSG00000168016.991.2897028.298001.689704.203703.41650HepG2CKAP4
TRANK1ENSG00000168016.959.2993026.187901.179003.280202.37930HepG2DDX19B
TRANK1ENSG00000168016.977.2807042.279800.870002.111001.50950HepG2DDX21
TRANK1ENSG00000168016.9131.7010076.536800.782901.980801.44280HepG2DDX3X
TRANK1ENSG00000168016.963.6189028.753701.145602.604801.85200HepG2DDX55
TRANK1ENSG00000168016.9116.5349027.095302.1045010.932809.77050HepG2DKC1
TRANK1ENSG00000168016.948.8854018.781401.380003.071702.33520HepG2DNAJC21
TRANK1ENSG00000168016.9193.0759063.204401.611008.972407.94270HepG2EIF2S1
TRANK1ENSG00000168016.9124.2753069.855200.831002.704202.07210HepG2EIF4A3
TRANK1ENSG00000168016.932.0088068.00060-1.087102.181001.56780HepG2EIF4B
TRANK1ENSG00000168016.9140.7288043.497501.693809.481608.11210HepG2EIF4G1
TRANK1ENSG00000168016.961.3180027.660301.148402.757101.92410HepG2EWSR1
TRANK1ENSG00000168016.9103.7657018.911102.455907.350105.70520HepG2FTO
TRANK1ENSG00000168016.915.6012037.88980-1.280202.201601.49310HepG2FUBP3
TRANK1ENSG00000168016.998.3669046.050001.094903.431902.18650HepG2FUS
TRANK1ENSG00000168016.989.9961021.395902.072407.314906.30470HepG2GPKOW
TRANK1ENSG00000168016.9121.5611067.327500.852302.625701.54520HepG2GRSF1
TRANK1ENSG00000168016.9117.8696044.249201.413404.956103.05170HepG2HLTF
TRANK1ENSG00000168016.997.0419018.961402.355409.578908.48370HepG2HNRNPA1
TRANK1ENSG00000168016.987.0226021.093402.044506.967805.90900HepG2HNRNPC
TRANK1ENSG00000168016.996.3853035.563001.438306.686005.63660HepG2HNRNPF
TRANK1ENSG00000168016.9106.1690040.193901.401205.801304.85580HepG2HNRNPL
TRANK1ENSG00000168016.990.4940020.953802.110509.620808.54450HepG2HNRNPU
TRANK1ENSG00000168016.9116.5081035.021001.734009.748108.46720HepG2IGF2BP1
TRANK1ENSG00000168016.9128.4338066.454200.950503.307702.57520HepG2IGF2BP2
TRANK1ENSG00000168016.969.0337025.880201.415404.320603.05650HepG2KIF1C
TRANK1ENSG00000168016.9183.4908088.722301.048203.789102.31580HepG2KRR1
TRANK1ENSG00000168016.930.9132070.48440-1.189102.971902.29350HepG2MAGOH
TRANK1ENSG00000168016.9148.5642070.882301.067504.080503.32880HepG2MATR3
TRANK1ENSG00000168016.984.8461043.584000.960902.651701.63480HepG2PCBP2
TRANK1ENSG00000168016.952.2494018.688701.483103.736402.89170HepG2PPIL4
TRANK1ENSG00000168016.9203.9009022.212303.1983024.8184022.77970HepG2PRPF8
TRANK1ENSG00000168016.9104.3060041.748401.320903.532802.87040HepG2PUF60
TRANK1ENSG00000168016.9133.6501044.281901.593607.682706.58870HepG2PUM2
TRANK1ENSG00000168016.968.7562028.849501.252803.681902.99270HepG2PUS1
TRANK1ENSG00000168016.9111.2060064.116800.794402.327101.74520HepG2QKI
TRANK1ENSG00000168016.9119.3735041.349201.529506.945905.67180HepG2RBM15
TRANK1ENSG00000168016.9105.9656058.184600.864802.627401.96790HepG2RBM25
TRANK1ENSG00000168016.9255.6126038.286202.7390023.6292022.04340HepG2RPLP0
TRANK1ENSG00000168016.9118.1837041.338001.515405.164803.89720HepG2RPS10
TRANK1ENSG00000168016.998.6444025.483401.952607.967606.98790HepG2RPS19
TRANK1ENSG00000168016.987.1843044.177600.980702.545101.77640HepG2RPS2
TRANK1ENSG00000168016.9174.1759073.066001.253204.326403.32550HepG2RPS3A
TRANK1ENSG00000168016.980.4746021.975601.872504.275703.32130HepG2RRP9
TRANK1ENSG00000168016.976.3667025.586001.577504.855503.62350HepG2SERBP1
TRANK1ENSG00000168016.988.7436022.486601.980506.041904.88080HepG2SNRNP70
TRANK1ENSG00000168016.9248.0394062.769401.9823019.6576018.64010HepG2SRFBP1
TRANK1ENSG00000168016.9104.1713021.749102.259808.721706.86120HepG2SRSF3
TRANK1ENSG00000168016.982.5980041.209401.003002.713902.09190HepG2SRSF5
TRANK1ENSG00000168016.997.9437034.933901.487207.142706.10720HepG2SRSF7
TRANK1ENSG00000168016.9100.1701054.485900.878402.149501.68290HepG2SSB
TRANK1ENSG00000168016.9201.9120088.486101.190106.735604.86790HepG2SSRP1
TRANK1ENSG00000168016.962.7474024.326401.366903.482402.43730HepG2SUPT6H
TRANK1ENSG00000168016.988.2110028.632901.623205.039104.16950HepG2SUPV3L1
TRANK1ENSG00000168016.9150.2226020.351602.8838020.9867019.84690HepG2TIAL1
TRANK1ENSG00000168016.988.6705038.658801.197604.282803.44420HepG2UPF1
TRANK1ENSG00000168016.9153.0022039.734301.9450013.3394011.27000HepG2UTP18
TRANK1ENSG00000168016.9102.2665042.516901.266105.402904.70260HepG2ZNF622
TRANK1ENSG00000168016.980.16950294.82860-1.8788015.7333013.05220K562AARS
TRANK1ENSG00000168016.9638.88890330.831900.949408.295806.20460K562ABCF1
TRANK1ENSG00000168016.9277.19470398.14880-0.522402.467001.92570K562AGGF1
TRANK1ENSG00000168016.9235.79390452.28820-0.9397011.540808.59350K562AKAP1
TRANK1ENSG00000168016.9297.27900414.29200-0.478802.726902.07860K562AKAP8L
TRANK1ENSG00000168016.9283.96140535.64270-0.915608.670706.40010K562APOBEC3C
TRANK1ENSG00000168016.9406.02710294.336800.464002.028701.51050K562AQR
TRANK1ENSG00000168016.9565.44340382.898900.562305.333903.39450K562BCCIP
TRANK1ENSG00000168016.9469.29190242.318700.953504.869903.69900K562BOP1
TRANK1ENSG00000168016.9438.00450230.487500.926207.547605.17670K562BUD13
TRANK1ENSG00000168016.9273.14220136.645400.999107.013505.15550K562CCAR1
TRANK1ENSG00000168016.9534.76660367.025900.542904.536002.58730K562CEBPZ
TRANK1ENSG00000168016.9650.73090346.238800.910205.659104.08360K562CNOT7
TRANK1ENSG00000168016.9593.33500447.406800.407202.899101.76250K562CPEB4
TRANK1ENSG00000168016.9758.89870257.605301.5586013.0473011.33540K562CPSF6
TRANK1ENSG00000168016.9132.73870320.96860-1.273806.690803.79500K562DAZAP1
TRANK1ENSG00000168016.9358.98010144.009301.317606.245003.57910K562DDX1
TRANK1ENSG00000168016.9608.98900421.845800.529604.791603.17390K562DDX21
TRANK1ENSG00000168016.9242.77090423.24930-0.801906.289603.30250K562DDX28
TRANK1ENSG00000168016.9220.33380458.29270-1.0566011.891209.54920K562DDX3X
TRANK1ENSG00000168016.9287.57550462.97530-0.687007.079506.10420K562DDX47
TRANK1ENSG00000168016.9283.54940152.980700.890104.737802.90560K562DHX30
TRANK1ENSG00000168016.9271.70070445.80700-0.714406.782405.31280K562DKC1
TRANK1ENSG00000168016.9411.50520146.937501.4856017.1192014.33350K562DNAJC21
TRANK1ENSG00000168016.9213.27500409.97510-0.942806.614004.62820K562EEF2
TRANK1ENSG00000168016.9229.97720396.06090-0.784205.872704.50920K562EFTUD2
TRANK1ENSG00000168016.9348.00420503.40780-0.532604.761303.15450K562EIF2S1
TRANK1ENSG00000168016.9722.92280293.786001.2990025.1437023.33530K562EIF2S2
TRANK1ENSG00000168016.9242.41660423.96760-0.806505.742504.17840K562EIF3D
TRANK1ENSG00000168016.9137.49350260.70810-0.923106.581205.36890K562EIF3G
TRANK1ENSG00000168016.9315.22560478.80750-0.603104.498203.45140K562EIF4A3
TRANK1ENSG00000168016.9376.99100149.157401.337607.771204.49790K562EIF4G1
TRANK1ENSG00000168016.9531.55390252.997501.071009.095206.13060K562ESF1
TRANK1ENSG00000168016.9243.39680417.95320-0.780006.836804.59690K562EWSR1
TRANK1ENSG00000168016.9424.80230211.827801.003806.273004.32900K562EXOSC5
TRANK1ENSG00000168016.9590.02550262.202101.170009.295807.67860K562FMR1
TRANK1ENSG00000168016.9579.68440222.281101.3828013.1325011.02250K562FTO
TRANK1ENSG00000168016.999.90310497.94050-2.3174046.1483043.85330K562FXR1
TRANK1ENSG00000168016.9599.34890245.910501.2852013.8728012.07240K562GPKOW
TRANK1ENSG00000168016.9638.22330322.358000.9853011.6435010.49230K562HNRNPC
TRANK1ENSG00000168016.9702.32260418.398500.747208.457606.53660K562HNRNPL
TRANK1ENSG00000168016.9253.39800479.80860-0.921107.130205.17870K562IGF2BP2
TRANK1ENSG00000168016.9760.59560316.399201.265309.694707.03670K562ILF2
TRANK1ENSG00000168016.9357.50010137.954901.3736011.780308.95060K562KHDRBS1
TRANK1ENSG00000168016.9140.02370504.25260-1.8485031.7948028.76200K562MAGOH
TRANK1ENSG00000168016.9300.66700420.86980-0.485202.958401.83620K562MAK16
TRANK1ENSG00000168016.9221.15450503.22850-1.1862015.6806013.39560K562MATR3
TRANK1ENSG00000168016.9854.17020240.052701.8311039.0402035.97390K562METAP2
TRANK1ENSG00000168016.9476.60160328.671500.536004.581903.56310K562MTPAP
TRANK1ENSG00000168016.9196.47260345.23350-0.813204.237503.07610K562NAA15
TRANK1ENSG00000168016.9336.39250478.11160-0.507203.584402.16520K562NCBP2
TRANK1ENSG00000168016.9857.49860390.478201.1348014.4527011.38760K562NONO
TRANK1ENSG00000168016.9674.92380365.187400.8860012.5240011.09650K562NSUN2
TRANK1ENSG00000168016.9846.99680332.636901.348304.862403.19000K562PABPC1
TRANK1ENSG00000168016.9286.92640136.995401.066505.582302.70890K562PARN
TRANK1ENSG00000168016.9235.32310492.90890-1.0667013.1927010.35090K562PCBP1
TRANK1ENSG00000168016.9243.14590448.65860-0.883807.707806.04570K562PCBP2
TRANK1ENSG00000168016.9143.56560206.66080-0.525602.186201.47440K562POLR2G
TRANK1ENSG00000168016.9686.34840308.219101.154909.992306.37630K562PPIL4
TRANK1ENSG00000168016.990.09110385.41520-2.0970025.3083023.03980K562PRPF8
TRANK1ENSG00000168016.9122.33660489.91350-2.0017036.4656034.15210K562PTBP1
TRANK1ENSG00000168016.9375.48010662.33390-0.818807.740806.37060K562PUF60
TRANK1ENSG00000168016.9948.82370704.585600.429302.563101.53850K562PUM1
TRANK1ENSG00000168016.91280.83930690.263000.8918017.5375015.21350K562PUM2
TRANK1ENSG00000168016.9167.95550410.86300-1.2906012.0297010.94460K562PUS1
TRANK1ENSG00000168016.9108.91180334.36820-1.6183011.426508.58910K562RAVER1
TRANK1ENSG00000168016.9238.74460400.32490-0.745706.064805.21280K562RBM15
TRANK1ENSG00000168016.9362.89180469.76450-0.372402.071601.34950K562RBM22
TRANK1ENSG00000168016.9328.82540457.93390-0.477802.796801.41140K562RBM34
TRANK1ENSG00000168016.9268.82540494.35300-0.878908.234406.27590K562NELFE
TRANK1ENSG00000168016.9124.47780392.52080-1.6569017.1777015.12860K562RPS19
TRANK1ENSG00000168016.9226.91500393.99720-0.796004.691202.95260K562RRP9
TRANK1ENSG00000168016.9111.35440184.17490-0.725903.085401.94120K562SAFB
TRANK1ENSG00000168016.9119.36780329.74620-1.4659011.145208.41920K562SERBP1
TRANK1ENSG00000168016.982.03740202.93220-1.306604.532402.87780K562SF1
TRANK1ENSG00000168016.9937.74380360.341101.3797033.4883031.05910K562SF3A3
TRANK1ENSG00000168016.9142.75800364.61600-1.3528010.105008.42310K562SF3B4
TRANK1ENSG00000168016.9527.40980247.404801.092005.368303.29720K562SFPQ
TRANK1ENSG00000168016.9330.66780150.489801.135609.791707.53840K562SLBP
TRANK1ENSG00000168016.9142.00200267.07960-0.911406.360703.71790K562SLTM
TRANK1ENSG00000168016.9285.22800480.27940-0.751806.596605.51410K562SRSF1
TRANK1ENSG00000168016.9405.70510268.921600.593104.315502.66880K562SSB
TRANK1ENSG00000168016.9471.06430312.061800.594003.253201.76040K562SSRP1
TRANK1ENSG00000168016.9415.89630285.384700.543202.794201.53660K562STAU1
TRANK1ENSG00000168016.9529.62620308.743400.778503.229601.45780K562STIP1
TRANK1ENSG00000168016.955.19280207.30160-1.9092016.1885014.23210K562SYNCRIP
TRANK1ENSG00000168016.9172.05500486.07230-1.4983019.6069017.39560K562TARDBP
TRANK1ENSG00000168016.9356.09850468.87210-0.396902.310401.56970K562TIA1
TRANK1ENSG00000168016.9285.25640460.10720-0.689705.229703.63230K562TRA2A
TRANK1ENSG00000168016.9602.84530278.064901.116306.625204.34350K562TRIP6
TRANK1ENSG00000168016.9269.77140431.50960-0.677703.691801.51310K562TUFM
TRANK1ENSG00000168016.9223.05470339.94940-0.607903.136501.95960K562U2AF1
TRANK1ENSG00000168016.9214.62640350.99040-0.709605.287004.18210K562U2AF2
TRANK1ENSG00000168016.91747.25730746.841501.2261028.1312024.81900K562UBE2L3
TRANK1ENSG00000168016.91737.53970387.215602.16570113.38650110.23410K562UPF1
TRANK1ENSG00000168016.9530.20340247.576101.0986011.179808.96890K562UTP3
TRANK1ENSG00000168016.9895.06150331.328701.4336029.7281027.09460K562WDR3
TRANK1ENSG00000168016.9146.64450293.29730-1.000004.607302.43160K562XRCC6
TRANK1ENSG00000168016.9977.89270331.495901.5606011.864109.92980K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRANK1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of TRANK1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TRANK1 is not avaliable on ENCORE database.