SSR1

General Information

Gene Name       : SSR1
Gene ID             : ENSG00000124783.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SSR1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SSR1ENSG00000124783.1379.0281.6580.34ENCSR000AEF
HepG2SSR1ENSG00000124783.13120.11190.35155.23ENCSR985KAT
K562SSR1ENSG00000124783.13103.91112.23108.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
SSR1A304-978A1BGKcLV44-73, Submitting, ENCORE2


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
Ssr1K562CRISPRBGKcLV37-47,BGKcLV37-48BGKcLV37-1,BGKcLV37-223.7,22.5NotSatisfiedENCORE2
SSR1K562CRISPRBGKcLV44-71,BGKcLV44-72BGKcLV44-1,BGKcLV44-247.3,60.1NotSatisfiedENCORE2
SSR1K562CRISPRSSR1-BGKcLV44-73,SSR1-BGKcLV44-74NT-BGKcLV44-1,NT-BGKcLV44-249.8,58.3SequencedENCORE2
Ssr1HepG2CRISPRBGHcLV36-45,BGHcLV36-46BGHcLV36-1,BGHcLV36-20.0,0.0NotSatisfiedENCORE2
SSR1HepG2CRISPRBGHcLV45-67,BGHcLV45-68BGHcLV45-1,BGHcLV45-257.0,60.9SequencingENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
SSR1Product_ID: A304-978A
Lot_ID: 1
Source: Bethyl Labs
Target Name: SSR1-human		 SSR1-K562-CRISPR-A304-978A.png<br>Caption: Western blot following CRISPR against SSR1 in K562 whole cell lysate using SSR1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against SSR1. SSR1 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.








RNA Targets

  • eCLIP assay for SSR1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SSR1 RNA is bound by 45 proteins.  







eCLIP assay for SSR1 is not avaliable on ENCORE database.





45 proteins are bound to SSR1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr672899507290002-3'-UTR,intron-Distal,intron-Proximal3.9994715.24456K562LIN28B
chr672887627288798-3'-UTR,intron-Distal3.1585713.96509K562FAM120A
chr672899447289995-3'-UTR,intron-Distal3.8794221.06101K562FAM120A
chr672891517289239-3'-UTR,intron-Distal3.9314933.96654K562FAM120A
chr672890207289102-3'-UTR,intron-Distal3.6360110.42519HepG2UPF1
chr672829537283019-3'-UTR,intron-Distal3.125833.01207K562IGF2BP2
chr672887307288806-3'-UTR,intron-Distal3.238596.68042HepG2UPF1
chr672895597289580-3'-UTR,intron-Distal3.774945.77257HepG2STAU2
chr672882627288355-3'-UTR,intron-Distal3.243178.84912K562YBX3
chr672895577289583-3'-UTR,intron-Distal7.7922254.45553HepG2LIN28B
chr672886977288776-3'-UTR,intron-Distal3.965387.21028HepG2IGF2BP3
chr672856557285746-3'-UTR,intron-Distal3.811576.18627HepG2HNRNPC
chr672898357289877-3'-UTR,intron-Distal,intron-Proximal4.1901454.53376K562UPF1
chr672888477288899-3'-UTR,intron-Distal,intron-Proximal3.7274413.20208HepG2FAM120A
chr672895727289625-3'-UTR,intron-Distal5.0999924.34907K562RPS3
chr672860617286122-3'-UTR,intron-Distal4.258464.24698K562IGF2BP1
chr672871347287156-3'-UTR,intron-Distal4.1154817.53248HepG2UPF1
chr672820587282094-3'-UTR,intron-Distal3.951983.25872K562IGF2BP1
chr672890637289106-3'-UTR,intron-Distal3.6380028.98531K562UPF1
chr672894747289539-3'-UTR,intron-Distal4.026699.00665HepG2UPF1
chr672877617287812-3'-UTR,intron-Distal,intron-Proximal5.5177913.89399K562PUM2
chr672897067289734-3'-UTR,intron-Distal3.9828939.97114K562UPF1
chr672883147288361-3'-UTR,intron-Distal4.2808319.47840K562PUM2
chr672889617288978-3'-UTR,intron-Distal5.2528917.33080K562UPF1
chr672821417282225-3'-UTR,intron-Distal4.644465.66908HepG2IGF2BP3
chr672894827289542-3'-UTR,intron-Distal4.3616221.69043HepG2LIN28B
chr672882337288288-3'-UTR,intron-Distal,intron-Proximal3.763498.46525K562IGF2BP2
chr672894667289542-3'-UTR,intron-Distal3.9670534.04906K562FAM120A
chr672894787289553-3'-UTR,intron-Distal5.0533857.30676K562UPF1
chr672894977289525-3'-UTR,intron-Distal3.7754011.42410HepG2FAM120A
chr672884417288468-3'-UTR,intron-Distal3.4742610.61538K562FAM120A
chr672895747289671-3'-UTR,intron-Distal5.5596321.45701HepG2UPF1
chr672896787289706-3'-UTR,intron-Distal3.6776418.69626K562UPF1
chr672895787289610-3'-UTR,intron-Distal3.713374.53184K562IGF2BP1
chr672889077288959-3'-UTR,intron-Distal,intron-Proximal3.0452915.11979K562PUM2
chr672823937282494-3'-UTR,intron-Distal5.7433018.09814K562PTBP1
chr672897827289859-3'-UTR,intron-Distal,intron-Proximal5.6355616.83940HepG2UPF1
chr672895747289607-3'-UTR,intron-Distal5.3366056.50826K562UPF1
chr672882887288315-3'-UTR,intron-Distal4.699614.78334K562IGF2BP2
chr672822237282274-3'-UTR,intron-Distal3.441403.10639HepG2PTBP1
chr672878897287957-3'-UTR,intron-Distal3.3551213.37195HepG2FUBP3
chr672898207289874-3'-UTR,intron-Distal,intron-Proximal3.1490323.16274K562FAM120A
chr672880877288160-3'-UTR,intron-Distal,intron-Proximal3.795947.92952HepG2TIA1
chr672881047288130-3'-UTR,intron-Distal4.028047.02548HepG2IGF2BP3
chr672901007290163-3'-UTR,CDS,intron-Distal,intron-Proximal4.1131521.22852HepG2SND1
chr672878247287913-3'-UTR,intron-Distal3.9028821.97774K562PUM2
chr672878937287974-3'-UTR,intron-Distal3.560585.44955HepG2TIAL1
chr672891827289230-3'-UTR,intron-Distal3.623448.26926HepG2FAM120A
chr672888997288937-3'-UTR,intron-Distal,intron-Proximal3.569675.55555HepG2FAM120A
chr672899597290055-3'-UTR,intron-Distal,intron-Proximal4.1596116.72234HepG2UPF1
chr672893087289374-3'-UTR,intron-Distal5.2871914.66416HepG2SUB1
chr672895557289571-3'-UTR,intron-Distal4.6196120.65960K562LIN28B
chr672878957287947-3'-UTR,intron-Distal4.629515.73042K562TIA1
chr672895537289574-3'-UTR,intron-Distal5.0358937.71413K562UPF1
chr672880877288161-3'-UTR,intron-Distal,intron-Proximal4.164829.44809HepG2TIAL1
chr672824937282618-3'-UTR,intron-Distal4.005925.58751HepG2MATR3
chr672891837289251-3'-UTR,intron-Distal4.0792811.85744HepG2UPF1
chr672886587288697-3'-UTR,intron-Distal3.679005.23915K562IGF2BP1
chr672896107289677-3'-UTR,intron-Distal3.267568.96786K562IGF2BP1
chr672885097288576-3'-UTR,intron-Distal4.5208112.53767K562LIN28B
chr672896077289629-3'-UTR,intron-Distal4.1425343.96770K562UPF1
chr672823587282501-3'-UTR,intron-Distal3.765237.56487K562MATR3
chr672893887289428-3'-UTR,intron-Distal4.3914310.36909HepG2FAM120A
chr672897057289730-3'-UTR,intron-Distal3.903383.71735K562TIA1
chr672890297289104-3'-UTR,intron-Distal4.722435.89618HepG2TIA1
chr672896077289631-3'-UTR,intron-Distal5.0502018.79555K562FAM120A
chr672897927289843-3'-UTR,intron-Distal,intron-Proximal4.3579419.06554HepG2LIN28B
chr672824407282487-3'-UTR,intron-Distal3.520078.88673HepG2PTBP1
chr672894667289532-3'-UTR,intron-Distal3.937694.29472K562IGF2BP1
chr672834297283465-3'-UTR,intron-Distal3.852493.19668HepG2UPF1
chr672887077288762-3'-UTR,intron-Distal3.1013710.59062K562FAM120A
chr672878277287880-3'-UTR,intron-Distal4.2715710.94121HepG2FUBP3
chr672896817289752-3'-UTR,intron-Distal5.9493813.33130HepG2UPF1
chr672871107287157-3'-UTR,intron-Distal3.920004.48902K562HNRNPC
chr672823687282440-3'-UTR,intron-Distal4.4620114.25525HepG2PTBP1
chr672884357288469-3'-UTR,intron-Distal4.4202621.94596K562PUM2
chr672889947289039-3'-UTR,intron-Distal3.4690627.56479K562UPF1
chr672896297289678-3'-UTR,intron-Distal3.9718445.39486K562UPF1
chr672826637282742-3'-UTR,intron-Distal4.161603.97134HepG2IGF2BP3
chr672895617289607-3'-UTR,intron-Distal3.3748220.58543K562FAM120A
chr672870967287134-3'-UTR,intron-Distal4.2248218.99208HepG2UPF1
chr672899957290049-3'-UTR,intron-Distal,intron-Proximal3.6142323.65117K562FAM120A
chr672825297282611-3'-UTR,intron-Distal3.419295.15820K562MATR3
chr672896317289664-3'-UTR,intron-Distal5.7912425.03643K562FAM120A
chr672887177288796-3'-UTR,intron-Distal3.0947910.62138HepG2FAM120A
chr672893097289382-3'-UTR,intron-Distal6.0470479.61404K562FAM120A
chr672893827289438-3'-UTR,intron-Distal5.5504540.51869K562FAM120A
chr672889877289035-3'-UTR,intron-Distal3.9698634.43156K562FAM120A
chr672895867289619-3'-UTR,intron-Distal3.9985410.44375K562LIN28B
chr672895717289586-3'-UTR,intron-Distal4.3914118.05220K562LIN28B
chr672897677289835-3'-UTR,intron-Distal,intron-Proximal4.5543684.34324K562UPF1
chr672896647289774-3'-UTR,intron-Distal4.6174443.51339K562FAM120A
chr672832827283309-3'-UTR,intron-Distal4.004004.10879K562KHDRBS1
chr672893107289410-3'-UTR,intron-Distal4.1479310.42519HepG2UPF1
chr672900887290164-3'-UTR,CDS,intron-Distal,intron-Proximal3.204545.61197K562GRWD1
chr672893187289384-3'-UTR,intron-Distal3.8425645.09960K562UPF1
chr672870117287095-3'-UTR,intron-Distal6.2027111.00768HepG2UPF1
chr672880857288104-3'-UTR,intron-Distal,intron-Proximal3.986586.61213HepG2IGF2BP3
chr672894967289555-3'-UTR,intron-Distal4.7916826.60520K562LIN28B
chr672879577287983-3'-UTR,intron-Distal3.310073.98039HepG2FUBP3
chr672823757282493-3'-UTR,intron-Distal3.180773.72088HepG2MATR3
chr672894677289497-3'-UTR,intron-Distal4.0364313.18626HepG2FAM120A
chr672899947290035-3'-UTR,intron-Distal,intron-Proximal3.033657.74333HepG2FAM120A
chr672895837289603-3'-UTR,intron-Distal7.0271428.66741HepG2LIN28B
chr672892367289274-3'-UTR,intron-Distal4.4906820.58173K562UPF1
chr672899507289991-3'-UTR,intron-Distal3.285196.96867HepG2LIN28B
chr672821457282268-3'-UTR,intron-Distal3.562736.98354K562IGF2BP2
chr672887167288777-3'-UTR,intron-Distal3.093795.41090K562IGF2BP1
chr672895427289557-3'-UTR,intron-Distal5.4682735.07603HepG2LIN28B
chr672897347289758-3'-UTR,intron-Distal4.0547633.40167K562UPF1
chr672824877282607-3'-UTR,intron-Distal3.233337.84909HepG2PTBP1
chr672883547288404-3'-UTR,intron-Distal3.6613514.40547K562FAM120A
chr672890667289109-3'-UTR,intron-Distal4.5490221.45951K562FAM120A
chr672878247287883-3'-UTR,intron-Distal4.6171711.75175K562IGF2BP1
chr672821457282271-3'-UTR,intron-Distal3.527357.80355HepG2IGF2BP1
chr672880067288067-3'-UTR,intron-Distal,intron-Proximal4.076288.45745K562IGF2BP1
chr672890277289102-3'-UTR,intron-Distal3.6237710.13283HepG2FUBP3
chr672893847289422-3'-UTR,intron-Distal4.0288622.52606K562UPF1
chr672889447288987-3'-UTR,intron-Distal4.8911326.45250K562FAM120A
chr672899487289994-3'-UTR,intron-Distal3.739368.51681HepG2FAM120A
chr672893047289373-3'-UTR,intron-Distal4.2048825.73672HepG2FAM120A
chr672885017288540-3'-UTR,intron-Distal4.9547518.20263K562FAM120A
chr672897977289874-3'-UTR,intron-Distal,intron-Proximal3.5189814.60192K562TARDBP
chr672883617288404-3'-UTR,intron-Distal3.9111414.79105K562PUM2
chr673133757313418-5'-UTR,intron-Distal,intron-Proximal3.525724.34275K562RPS3
chr673133277313420-5'-UTR,CDS,intron-Distal,intron-Proximal3.5636413.84542K562DDX3X
chr673133267313429-5'-UTR,CDS,intron-Distal,intron-Proximal3.011786.35565K562GRWD1
chr673017917301806-CDS,intron-Distal,intron-Proximal3.073064.87903HepG2GRWD1
chr673101467310215-CDS,intron-Distal,intron-Proximal3.1605219.53754K562ZNF800
chr673017547301806-CDS,intron-Distal,intron-Proximal4.132658.60722K562PUM1
chr673014857301553-CDS,intron-Distal,intron-Proximal3.645057.05055K562PRPF8
chr673101607310219-CDS,intron-Distal,intron-Proximal3.3002819.36588HepG2GRWD1
chr673132737313292-CDS,intron-Distal4.4477323.97869HepG2GRWD1
chr673016757301741-CDS,intron-Distal,intron-Proximal3.586499.80793K562SND1
chr673017627301808-CDS,intron-Distal,intron-Proximal4.131105.54422HepG2FXR2
chr673037817303795-CDS,intron-Distal,intron-Proximal3.8149111.46750HepG2BCLAF1
chr673015807301684-CDS,intron-Distal,intron-Proximal4.0051010.58522K562PUM1
chr673037797303856-CDS,intron-Distal,intron-Proximal3.3199914.34722K562PUM1
chr673017577301791-CDS,intron-Distal3.383459.58230HepG2GRWD1
chr673015617301642-CDS,intron-Distal,intron-Proximal3.127883.83396HepG2IGF2BP3
chr673101687310263-CDS,intron-Distal,intron-Proximal3.3137533.87877HepG2BCLAF1
chr673037797303849-CDS,intron-Distal,intron-Proximal3.329498.29695HepG2UCHL5
chr673038327303863-CDS,intron-Distal3.7337222.26086HepG2GRWD1
chr673038507303871-CDS,intron-Distal,intron-Proximal5.5153920.41195HepG2TRA2A
chr673101547310207-CDS,intron-Distal,intron-Proximal3.480488.65656K562CPSF6
chr672981657298223-CDS,intron-Distal4.7112516.30436HepG2SND1
chr673017527301806-CDS,intron-Distal,intron-Proximal3.899933.01017K562CPSF6
chr673037817303808-CDS,intron-Distal,intron-Proximal3.355287.35442K562SND1
chr673101537310168-CDS,intron-Distal,intron-Proximal4.0648429.07822HepG2BCLAF1
chr673101487310155-CDS,intron-Distal,intron-Proximal5.1312613.17308HepG2TRA2A
chr673102197310238-CDS,intron-Distal,intron-Proximal3.489389.16268HepG2GRWD1
chr673016147301666-CDS,intron-Distal,intron-Proximal3.8365215.11994HepG2SND1
chr673101517310171-CDS,intron-Distal,intron-Proximal3.8041735.08877K562ZNF622
chr673017357301801-CDS,intron-Distal4.735264.69573HepG2TRA2A
chr673037777303874-CDS,intron-Distal,intron-Proximal3.218657.79126K562CPSF6
chr673037537303877-CDS,intron-Distal,intron-Proximal3.0955322.32848K562GPKOW
chr673017457301814-CDS,intron-Distal,intron-Proximal3.003998.15295HepG2U2AF2
chr673017307301808-CDS,intron-Distal,intron-Proximal4.190885.54704HepG2UCHL5
chr673017357301806-CDS,intron-Distal,intron-Proximal3.2085615.46618K562UCHL5
chr673037887303872-CDS,intron-Distal,intron-Proximal3.1703150.09503HepG2PPIG
chr673101557310242-CDS,intron-Distal,intron-Proximal4.0293717.12502HepG2TRA2A
chr673038267303849-CDS,intron-Distal3.5775021.02092HepG2AQR
chr673132927313344-CDS,intron-Distal4.1126825.38083HepG2GRWD1
chr673038547303873-CDS,intron-Distal,intron-Proximal3.466804.39088K562SRSF1
chr673101717310193-CDS,intron-Distal,intron-Proximal4.4232636.12712K562ZNF622
chr673101467310154-CDS,intron-Distal,intron-Proximal3.982256.18399K562CPSF6
chr673101487310217-CDS,intron-Distal,intron-Proximal3.5880528.10242K562UCHL5
chr673037827303832-CDS,intron-Distal,intron-Proximal4.1808215.01047HepG2GRWD1
chr673037907303871-CDS,intron-Distal,intron-Proximal3.4758410.68649HepG2SND1
chr673037957303859-CDS,intron-Distal4.4150661.54648HepG2BCLAF1
chr673015527301626-CDS,intron-Distal,intron-Proximal3.9349830.00290K562SND1
chr673037937303854-CDS,intron-Distal3.4137318.55259HepG2ZNF800
chr672956237295696-CDS,intron-Distal,intron-Proximal3.021268.62102HepG2LIN28B
chr673037927303875-CDS,intron-Distal,intron-Proximal3.4182050.94989HepG2BUD13
chr673037987303873-CDS,intron-Distal,intron-Proximal3.144675.59989K562SRSF7
chr673038617303872-CDS,intron-Distal,intron-Proximal3.4980612.90295K562GRWD1
chr672990177299080-CDS,intron-Distal,intron-Proximal3.3421110.24099K562SF3B4
chr673101467310225-CDS,intron-Distal,intron-Proximal3.049719.14798K562PUM1
chr673016847301724-CDS,intron-Distal,intron-Proximal3.564894.14939K562PUM1
chr672956237295698-CDS,intron-Distal,intron-Proximal3.187578.14373K562ZNF622
chr672981547298234-CDS,intron-Distal,intron-Proximal3.5449618.46935K562SND1
chr673017407301806-CDS,intron-Distal,intron-Proximal3.412559.24180K562GRWD1
chr673101497310199-CDS,intron-Distal,intron-Proximal3.850833.30425K562LIN28B
chr673038547303872-CDS,intron-Distal,intron-Proximal3.318978.26405HepG2ZNF800
chr673037787303853-CDS,intron-Distal,intron-Proximal3.6982430.98318K562ZNF800
chr673102517310263-CDS,intron-Distal,intron-Proximal4.9248117.42846HepG2GRWD1
chr673038597303871-CDS,intron-Distal,intron-Proximal3.7953035.36459K562ZNF622
chr673017617301806-CDS,intron-Distal,intron-Proximal4.706488.02508K562ZNF800
chr673017547301785-CDS,intron-Distal4.6662220.26093HepG2BCLAF1
chr673015537301621-CDS,intron-Distal,intron-Proximal3.515483.85107K562IGF2BP1
chr673016267301675-CDS,intron-Distal,intron-Proximal4.1247610.27696K562SND1
chr673037817303798-CDS,intron-Distal,intron-Proximal4.6443616.19084K562ZNF622
chr673017417301805-CDS,intron-Distal4.5689415.28938K562SND1
chr673038597303871-CDS,intron-Distal,intron-Proximal4.259594.97430HepG2SRSF1
chr672956247295717-CDS,intron-Distal,intron-Proximal3.145895.80244K562LIN28B
chr673101487310253-CDS,intron-Distal,intron-Proximal3.063638.92562HepG2FXR2
chr673037987303859-CDS,intron-Distal4.3248548.86059K562ZNF622
chr673037827303814-CDS,intron-Distal,intron-Proximal4.370124.49016HepG2FXR2
chr672989747299056-CDS,intron-Distal,intron-Proximal3.1165112.35960HepG2BCLAF1
chr673015567301614-CDS,intron-Distal,intron-Proximal4.5761544.63223HepG2SND1
chr673102177310243-CDS,intron-Distal,intron-Proximal3.041617.74050K562UCHL5
chr673102387310251-CDS,intron-Distal,intron-Proximal4.2057114.27470HepG2GRWD1
chr673038637303872-CDS,intron-Distal,intron-Proximal3.5168315.39979HepG2GRWD1
chr673017367301810-CDS,intron-Distal,intron-Proximal3.705367.41781HepG2AQR
chr673016917301736-CDS,intron-Distal,intron-Proximal3.494428.21916K562YBX3
chr673015557301614-CDS,intron-Distal,intron-Proximal3.466945.75289K562IGF2BP2
chr673038597303871-CDS,intron-Distal,intron-Proximal3.936857.14011HepG2FXR2
chr673017347301807-CDS,intron-Distal,intron-Proximal3.5211011.91421HepG2ZNF800
chr673015427301565-CDS,intron-Distal,intron-Proximal3.367453.00939K562ZNF800
chr673101487310156-CDS,intron-Distal,intron-Proximal3.296115.11480HepG2UCHL5
chr672989797299056-CDS,intron-Distal,intron-Proximal3.3623412.05871K562SND1
chr673101477310153-CDS,intron-Distal,intron-Proximal3.282934.08845K562SRSF1
chr673038597303872-CDS,intron-Distal,intron-Proximal4.3547834.27562HepG2BCLAF1
chr673038327303845-CDS,intron-Distal4.2192316.90340K562GRWD1
chr673038577303886-CDS,intron-Distal,intron-Proximal3.5219621.03638HepG2AQR
chr673017447301788-CDS,intron-Distal3.460153.98500HepG2SND1
chr673038577303873-CDS,intron-Distal,intron-Proximal3.4484220.96301K562UCHL5
chr673038537303872-CDS,intron-Distal,intron-Proximal3.3851117.32666K562ZNF800
chr673016757301734-CDS,intron-Distal,intron-Proximal3.393458.32536HepG2ZNF800
chr673017477301806-CDS,intron-Distal,intron-Proximal3.5445213.09055K562ZNF622
chr673102387310263-CDS,intron-Distal,intron-Proximal3.263314.86114K562SND1
chr673037827303857-CDS,intron-Distal,intron-Proximal3.8867348.68924K562UCHL5
chr673101937310212-CDS,intron-Distal,intron-Proximal3.5154620.52178K562ZNF622
chr673101457310263-CDS,intron-Distal,intron-Proximal4.021638.45511K562SRSF7
chr673101497310151-CDS,intron-Distal,intron-Proximal3.8015825.92944K562ZNF622
chr673016817301736-CDS,intron-Distal,intron-Proximal4.008129.06911HepG2GRWD1
chr673017857301807-CDS,intron-Distal,intron-Proximal4.3830516.95425HepG2BCLAF1
chr672989797299016-CDS,intron-Distal,intron-Proximal3.100214.90834HepG2SND1
chr673101667310226-CDS,intron-Distal,intron-Proximal3.335816.97201HepG2UCHL5
chr673037897303850-CDS,intron-Distal4.8596923.09261HepG2TRA2A
chr673101487310153-CDS,intron-Distal,intron-Proximal3.7397717.68336HepG2BCLAF1
chr673016667301729-CDS,intron-Distal,intron-Proximal3.432037.85262K562UCHL5
chr673101477310207-CDS,intron-Distal,intron-Proximal4.741897.62568HepG2SRSF1
chr672968427296939-intron-Distal4.776877.20012K562ILF3
chr672965947296626-intron-Distal3.625204.52210K562KHSRP
chr673132207313257-intron-Distal5.721839.95272K562AQR
chr672988757298951-intron-Distal,intron-Proximal3.601554.70224K562KHSRP
chr672720017272089-intron-Distal3.058033.00129HepG2SUGP2
chr673014637301509-intron-Distal,intron-Proximal4.192244.16174HepG2PRPF8
chr672968567296930-intron-Distal3.199813.59783HepG2HNRNPK
chr672966267296651-intron-Distal3.346073.46531K562KHSRP
chr672982757298327-intron-Distal,intron-Proximal3.958523.48768HepG2KHSRP
chr672789657279174-intron-Distal3.761994.59945HepG2HNRNPK
chr673022787302332-intron-Distal3.468447.15738HepG2U2AF2
chr672741197274263-intron-Distal4.207253.84389HepG2SUGP2
chr672968497296915-intron-Distal5.524529.77283HepG2QKI
chr672969387296994-intron-Distal4.5081513.53114HepG2PCBP2
chr672752037275352-intron-Distal3.296254.08528HepG2SUGP2
chr672968517296938-intron-Distal6.0389838.34299HepG2PCBP2
chr673022327302271-intron-Distal3.885093.30440HepG2QKI
chr673021067302193-intron-Distal3.317594.40834HepG2QKI
chr673018127301858-intron-Distal,intron-Proximal3.680395.47851K562SF3B4
chr673052537305315-intron-Distal3.811143.03891HepG2PTBP1
chr673019127301950-intron-Distal3.610344.21358HepG2U2AF2
chr673021147302188-intron-Distal3.924717.15738HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SSR1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SSR1 is not available on ENCORE database.

  • 112 RBPs can affect the levels of SSR1.  








The Knockdown/knockout RNA-Seq assay for SSR1 is not available on ENCORE database.





112 RBPs can affect the gene expression of SSR1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SSR1ENSG00000124783.83547.050704453.87410-0.328403.287302.12600HepG2AATF
SSR1ENSG00000124783.85271.198306129.40260-0.217603.783003.09290HepG2ACO1
SSR1ENSG00000124783.83632.629005543.82390-0.609908.489306.86010HepG2ADAR
SSR1ENSG00000124783.85034.485706158.27440-0.290705.236604.21190HepG2AKAP8L
SSR1ENSG00000124783.85478.529908029.44700-0.551506.640405.44950HepG2ASCC1
SSR1ENSG00000124783.85327.997207185.81500-0.431605.372304.57230HepG2BOP1
SSR1ENSG00000124783.84832.091507387.29100-0.6124014.0995012.58900HepG2CALR
SSR1ENSG00000124783.86581.168008822.09090-0.422802.409901.50670HepG2CCAR1
SSR1ENSG00000124783.84034.241606128.15970-0.6032027.4822025.88140HepG2CKAP4
SSR1ENSG00000124783.86851.471508107.08460-0.242805.978904.94700HepG2DAZAP1
SSR1ENSG00000124783.83961.792005668.86020-0.5169018.2310016.52700HepG2DDX19B
SSR1ENSG00000124783.84581.351905693.12700-0.313405.028803.50260HepG2DDX1
SSR1ENSG00000124783.82352.425204916.80590-1.0636015.0234013.59010HepG2DDX21
SSR1ENSG00000124783.84110.563909296.05310-1.1773026.1258024.40850HepG2DDX3X
SSR1ENSG00000124783.83171.410904148.82210-0.387603.633802.08420HepG2DDX52
SSR1ENSG00000124783.84223.608406012.03280-0.509403.143602.32720HepG2DDX55
SSR1ENSG00000124783.86125.299407984.87990-0.382502.990102.35030HepG2DDX6
SSR1ENSG00000124783.84098.911105384.24480-0.393502.692801.72230HepG2DHX30
SSR1ENSG00000124783.84492.857205864.20040-0.384308.765307.69480HepG2DKC1
SSR1ENSG00000124783.84683.849805582.50330-0.253203.491902.70880HepG2DNAJC21
SSR1ENSG00000124783.84264.228405532.88520-0.3757011.2672010.04920HepG2DNAJC2
SSR1ENSG00000124783.85440.949407676.67610-0.496605.422004.60950HepG2EIF2S1
SSR1ENSG00000124783.85390.694404018.933500.423604.480203.35310HepG2EIF3D
SSR1ENSG00000124783.86873.690908483.92810-0.303601.989301.44440HepG2EIF4A3
SSR1ENSG00000124783.85549.266808259.72470-0.573804.744603.85860HepG2EIF4B
SSR1ENSG00000124783.85160.002606567.21890-0.347903.483302.26310HepG2ESF1
SSR1ENSG00000124783.86292.717209599.59460-0.6093022.7042021.26300HepG2ETF1
SSR1ENSG00000124783.84733.455105989.60070-0.339603.221402.32130HepG2EWSR1
SSR1ENSG00000124783.86017.901704684.308400.361303.787102.47910HepG2FASTKD2
SSR1ENSG00000124783.86136.323207655.03290-0.319002.315301.60750HepG2FIP1L1
SSR1ENSG00000124783.86166.984005004.531500.301202.760401.49290HepG2FKBP4
SSR1ENSG00000124783.85240.101004261.855000.298003.014602.19750HepG2FUBP3
SSR1ENSG00000124783.84566.041906591.06450-0.529603.908602.58780HepG2FUS
SSR1ENSG00000124783.85709.381008559.02430-0.584107.474206.37780HepG2FXR1
SSR1ENSG00000124783.85958.878007940.22540-0.414103.582602.82980HepG2G3BP1
SSR1ENSG00000124783.84422.754807478.31260-0.7578010.803109.59450HepG2GPKOW
SSR1ENSG00000124783.82884.920104685.92120-0.699804.614003.18580HepG2GRSF1
SSR1ENSG00000124783.84539.519705851.87890-0.366407.789606.25280HepG2HDGF
SSR1ENSG00000124783.81551.005105635.98160-1.8615082.5291080.08070HepG2HNRNPA1
SSR1ENSG00000124783.82929.207504177.46980-0.512103.365801.82000HepG2HNRNPAB
SSR1ENSG00000124783.82751.790206268.88040-1.1878035.7564033.59790HepG2HNRNPC
SSR1ENSG00000124783.85367.771406785.89430-0.338206.924305.85870HepG2HNRNPF
SSR1ENSG00000124783.85684.110607385.10610-0.3777013.3493011.97100HepG2HNRNPL
SSR1ENSG00000124783.82659.673106227.44230-1.2274080.1254077.41770HepG2HNRNPU
SSR1ENSG00000124783.85214.960706682.17650-0.357705.028804.08060HepG2IGF2BP1
SSR1ENSG00000124783.86385.581108071.23470-0.338002.849902.16610HepG2IGF2BP2
SSR1ENSG00000124783.82591.373307573.82440-1.5473011.836009.93160HepG2IGF2BP3
SSR1ENSG00000124783.85593.902006361.14450-0.185403.407802.60010HepG2ILF2
SSR1ENSG00000124783.82975.856704820.56510-0.695905.037903.36600HepG2KHDRBS1
SSR1ENSG00000124783.84555.755505603.09800-0.298507.490905.87170HepG2KIF1C
SSR1ENSG00000124783.84368.314605929.61330-0.440903.049301.73520HepG2KRR1
SSR1ENSG00000124783.84929.185706195.70150-0.329903.800202.85530HepG2MSI2
SSR1ENSG00000124783.85431.580507278.28260-0.422202.610701.67310HepG2MTPAP
SSR1ENSG00000124783.84637.281108813.01090-0.9264015.9225014.48780HepG2NCBP2
SSR1ENSG00000124783.85775.903208038.93800-0.477008.292406.99510HepG2NOL12
SSR1ENSG00000124783.86975.266504626.206600.592303.561502.54460HepG2PABPC1
SSR1ENSG00000124783.84963.604206164.23570-0.312506.010804.83740HepG2PARN
SSR1ENSG00000124783.83937.348105554.39960-0.4964011.039809.62060HepG2PPIL4
SSR1ENSG00000124783.83040.546604639.63050-0.609704.179703.21120HepG2PRPF8
SSR1ENSG00000124783.85353.956507633.96610-0.5118014.7892013.71960HepG2PTBP1
SSR1ENSG00000124783.86147.612407673.71180-0.319903.736103.05470HepG2PUF60
SSR1ENSG00000124783.89392.673108145.798700.205402.351701.79640HepG2PUM1
SSR1ENSG00000124783.84073.216606243.20720-0.6161025.0625023.55260HepG2PUS1
SSR1ENSG00000124783.85896.864007798.43300-0.403202.820001.95590HepG2RBM15
SSR1ENSG00000124783.85773.893508023.49250-0.4747011.7346010.82170HepG2RBM22
SSR1ENSG00000124783.84273.412306087.09350-0.510405.765504.31980HepG2RBM27
SSR1ENSG00000124783.85132.065908495.67900-0.7272030.7793029.38720HepG2NELFE
SSR1ENSG00000124783.85866.116107912.91930-0.4318011.8702010.72900HepG2RECQL
SSR1ENSG00000124783.84395.899707309.95370-0.7337014.7740013.43180HepG2RPLP0
SSR1ENSG00000124783.82874.985203910.37550-0.443804.553203.78540HepG2RPS19
SSR1ENSG00000124783.84603.640105614.12420-0.286302.126701.42020HepG2RPS2
SSR1ENSG00000124783.88080.285105545.875800.5429022.3818020.79860HepG2SAFB2
SSR1ENSG00000124783.86844.680807947.52890-0.215503.052302.43490HepG2SF3B4
SSR1ENSG00000124783.85378.710307357.51320-0.4520017.4831016.00320HepG2SLBP
SSR1ENSG00000124783.81871.822705874.31180-1.6500013.7094010.62030HepG2SLTM
SSR1ENSG00000124783.84557.999006467.53480-0.5048022.7590021.19580HepG2SMN1
SSR1ENSG00000124783.84623.017309062.25320-0.9710064.1042062.51860HepG2SRFBP1
SSR1ENSG00000124783.86033.535607576.45070-0.328507.441806.48240HepG2SRSF5
SSR1ENSG00000124783.85056.116506666.88990-0.399009.605108.44180HepG2SRSF7
SSR1ENSG00000124783.86090.259206749.11460-0.148201.912901.43830HepG2SRSF9
SSR1ENSG00000124783.89319.430307868.205300.244104.699004.06620HepG2SSB
SSR1ENSG00000124783.84277.439005911.48360-0.466804.021702.49930HepG2SSRP1
SSR1ENSG00000124783.83304.307604418.23750-0.419102.505701.46790HepG2STIP1
SSR1ENSG00000124783.84853.046708616.70170-0.8282053.1191051.02070HepG2SUCLG1
SSR1ENSG00000124783.83665.068005985.41760-0.707604.680603.83620HepG2SUPV3L1
SSR1ENSG00000124783.83418.228807456.94100-1.1253053.5354051.47080HepG2TAF15
SSR1ENSG00000124783.88469.840306955.805900.284002.553901.85320HepG2TARDBP
SSR1ENSG00000124783.85855.987906851.41400-0.226502.121401.38780HepG2TIA1
SSR1ENSG00000124783.82839.697306051.52550-1.0916040.6786039.17580HepG2TIAL1
SSR1ENSG00000124783.82849.186206105.19050-1.0995056.9763054.86380HepG2TRIM56
SSR1ENSG00000124783.81985.171403536.13360-0.832907.479306.22540HepG2UCHL5
SSR1ENSG00000124783.82176.051406955.13400-1.67640150.82920147.52250HepG2UTP3
SSR1ENSG00000124783.83619.259005891.97110-0.703105.217804.23040HepG2XRN2
SSR1ENSG00000124783.88789.698007922.969800.149702.693302.15190HepG2ZNF622
SSR1ENSG00000124783.86052.394407639.90870-0.336007.700506.82120K562AGGF1
SSR1ENSG00000124783.83068.566603631.19190-0.242903.480702.39880K562BCLAF1
SSR1ENSG00000124783.83565.482504484.79220-0.330903.944303.00870K562CPSF6
SSR1ENSG00000124783.83422.999604054.23580-0.244203.155401.85650K562DDX21
SSR1ENSG00000124783.83348.472304447.51350-0.409505.345103.83080K562DDX3X
SSR1ENSG00000124783.811864.183408554.798900.4717011.360009.34800K562DKC1
SSR1ENSG00000124783.84248.686604885.40610-0.201502.501401.36500K562EIF2S1
SSR1ENSG00000124783.86446.536404348.689000.5678015.5914014.09460K562EIF2S2
SSR1ENSG00000124783.86495.863807687.55840-0.243003.290302.26870K562EIF4G2
SSR1ENSG00000124783.82672.027504563.38130-0.7722013.5828011.62710K562FMR1
SSR1ENSG00000124783.83047.152303867.96910-0.344102.766401.85200K562FTO
SSR1ENSG00000124783.83785.948104832.30920-0.352106.080805.23610K562FXR1
SSR1ENSG00000124783.87337.288405069.908600.533202.414001.75970K562G3BP2
SSR1ENSG00000124783.83597.598305795.26390-0.6878014.1665012.43370K562GRSF1
SSR1ENSG00000124783.82550.866604251.70950-0.7371016.1010013.81420K562HNRNPA1
SSR1ENSG00000124783.81659.451503721.88780-1.1653033.0369031.03680K562HNRNPC
SSR1ENSG00000124783.82755.692903323.32510-0.270202.337701.30300K562HNRNPF
SSR1ENSG00000124783.83615.586404708.19190-0.380906.340904.97670K562HNRNPU
SSR1ENSG00000124783.88564.272506852.141600.321703.075102.23830K562HSPD1
SSR1ENSG00000124783.83974.196405827.75610-0.552306.652904.68310K562IGF2BP3
SSR1ENSG00000124783.81414.799402015.32610-0.510405.131203.11750K562KHDRBS1
SSR1ENSG00000124783.82298.587804179.53730-0.8626019.6953017.28910K562METAP2
SSR1ENSG00000124783.86367.287708194.23080-0.363903.699302.39140K562MSI2
SSR1ENSG00000124783.83404.189304332.67170-0.347907.560606.28150K562MTPAP
SSR1ENSG00000124783.83999.105604813.95690-0.267507.102505.98740K562NSUN2
SSR1ENSG00000124783.83340.470004303.43630-0.365403.033302.16270K562PCBP3
SSR1ENSG00000124783.82547.684203300.84900-0.373704.758303.70690K562POLR2G
SSR1ENSG00000124783.84335.554405737.30810-0.404204.346903.28750K562PPIG
SSR1ENSG00000124783.83622.943005851.44700-0.6916010.639009.39550K562PTBP1
SSR1ENSG00000124783.811274.749808921.358600.337705.038203.56470K562PUM1
SSR1ENSG00000124783.85970.462207884.34760-0.401104.239003.58890K562PUS1
SSR1ENSG00000124783.84450.316905612.08940-0.334602.656301.83400K562RBM22
SSR1ENSG00000124783.83590.976105905.53400-0.717708.567606.57650K562NELFE
SSR1ENSG00000124783.84140.426205150.59320-0.315003.168801.34700K562RECQL
SSR1ENSG00000124783.84410.026403141.892500.489104.914903.82360K562RPS19
SSR1ENSG00000124783.83303.077804558.98250-0.464904.939603.55200K562RPS3
SSR1ENSG00000124783.85374.413304750.192200.178002.006001.30420K562SF3A3
SSR1ENSG00000124783.81590.057302198.42650-0.467404.260802.66630K562SLBP
SSR1ENSG00000124783.81698.495204236.15600-1.3185024.0682020.00210K562SLTM
SSR1ENSG00000124783.84332.028004866.67850-0.167902.491501.59780K562SRPK2
SSR1ENSG00000124783.83264.994604401.30970-0.430905.998204.34170K562SRSF4
SSR1ENSG00000124783.83440.800004265.40050-0.309902.858801.55690K562SSB
SSR1ENSG00000124783.85577.867807318.42240-0.391806.065203.95270K562SUCLG1
SSR1ENSG00000124783.82381.941303409.36360-0.517406.775505.14550K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SSR1 is not available on ENCORE database.





9 RBPs can affect the splicing of SSR1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESSR1ENSG00000124783.8chr6-729815572982347287803729016472989797299056-0.123000.000020.00045excludedHepG2U2AF2
SESSR1ENSG00000124783.8chr6-729815572982637295617729571872989797299056-0.071000.000000.00000excludedK562AQR
SESSR1ENSG00000124783.8chr6-729815572982347287803729016472989797299056-0.080000.000180.00400excludedK562PUS1
SESSR1ENSG00000124783.8chr6-729815572982597295617729571872989797299056-0.058000.000340.01298excludedHepG2SF3A3
SESSR1ENSG00000124783.8chr6-7297328729744272956247295718729815572982340.600000.000000.00000includedK562HNRNPC
SESSR1ENSG00000124783.8chr6-729562472957187281375729016472981557298234-0.060000.000640.01319excludedK562HNRNPC
A3SSSSR1ENSG00000124783.8chr6-7298155729837172981557298234729897972992060.056000.000000.00000longerK562AQR
A5SSSSR1ENSG00000124783.8chr6-730154273018057301773730180572989797299056-0.053000.000000.00001shorterK562AQR
MXESSR1ENSG00000124783.8chr6-730154273016017301773730180572989797299056730378273038700.212000.000030.002931includedK562LIN28B
MXESSR1ENSG00000124783.8chr6-729562472957187298979729908772813757290164730154273018050.056000.000000.000001includedK562AQR
MXESSR1ENSG00000124783.8chr6-72956177295718729815572982347289908729016472989797299056-0.062000.000000.000002includedK562AQR
MXESSR1ENSG00000124783.8chr6-72956247295718729815572982347288914729016472989797299056-0.152000.000010.000102includedHepG2U2AF2
MXESSR1ENSG00000124783.8chr6-730154273016017301773730180572989797299056730378273038700.181000.000270.022581includedK562PHF6
MXESSR1ENSG00000124783.8chr6-729561772957187297328729744272899087290164729815572982340.097000.000000.000271includedHepG2HNRNPC
MXESSR1ENSG00000124783.8chr6-730154273016017301773730180572989797299056730378273038700.231000.003630.054811includedK562HNRNPC
MXESSR1ENSG00000124783.8chr6-729561772957187297328729744272899087290164729815572982340.719000.000000.000001includedK562HNRNPC
MXESSR1ENSG00000124783.8chr6-730154273016017301773730180572989797299056730378273038700.184000.001730.053061includedK562DDX55
MXESSR1ENSG00000124783.8chr6-72901007290164729562472957187268538726938772981557298234-0.051000.003980.074122includedHepG2HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SSR1 is not avaliable on ENCORE database.