SNRPA1

General Information

Gene Name : SNRPA1
Gene ID : ENSG00000131876.16
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SNRPA1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SNRPA1	ENSG00000131876.16	97.17	93.99	95.58	ENCSR000AEF
HepG2	SNRPA1	ENSG00000131876.16	74.33	108.58	91.45	ENCSR985KAT
K562	SNRPA1	ENSG00000131876.16	148.66	127.04	137.85	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
eCLIP	eCLIP: 4203	ENCSR203ACR	SNRPA1	HepG2	Released	ENCAB879PIQ	ENCSR413TSY

eCLIP

RBP	Exp_UID	Cell_Line	ENCODE_ACCESSION	Control_ENCODE_ACCESSION	ENCODE_Antibody_ID	Antibody	Lot_num	Status	Project
SNRPA1	4203	HepG2	ENCSR203ACR	ENCSR413TSY	ENCAB879PIQ	A303-948A	1	Released	ENCODE4

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
SNRPA1	K562	CRISPR			BGKcLV21-43,BGKcLV21-44	BGKcLV21-1,BGKcLV21-2		NotSatisfied	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SNRPA1 is not avaliable on ENCORE database.

Proteins bound to RNA

SNRPA1 RNA is bound by 18 proteins.

CanvasJS.com

eCLIP assay for SNRPA1 is not avaliable on ENCORE database.

18 proteins are bound to SNRPA1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	101825258	101825328	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.28065	15.05264	K562	SF3B4
chr15	101821874	101821959	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.53115	14.36548	K562	PUM2
chr15	101826667	101826736	-	intron-Distal,intron-Proximal	3.88705	12.21109	HepG2	U2AF2
chr15	101826058	101826145	-	intron-Distal,intron-Proximal	6.39113	12.01365	K562	SF3B4
chr15	101825996	101826052	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.47719	11.35586	HepG2	SF3A3
chr15	101827060	101827130	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.17592	10.82117	K562	GPKOW
chr15	101827037	101827128	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.68648	10.26632	K562	KHSRP
chr15	101826002	101826058	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.36700	9.71879	K562	SF3B4
chr15	101826996	101827099	-	intron-Distal,intron-Proximal	3.48491	9.48572	K562	EFTUD2
chr15	101827285	101827349	-	intron-Distal,intron-Proximal	3.32410	8.21744	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 38 entries

eCLIP assay for SNRPA1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SNRPA1 is not available on ENCORE database.
114 RBPs can affect the levels of SNRPA1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SNRPA1 is not available on ENCORE database.

114 RBPs can affect the gene expression of SNRPA1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SNRPA1	ENSG00000131876.12	807.17310	1807.59380	-1.16310	40.01720	38.23140	HepG2	ETF1
SNRPA1	ENSG00000131876.12	555.34920	1430.61120	-1.36520	32.27160	30.51810	HepG2	PUF60
SNRPA1	ENSG00000131876.12	632.61690	1577.86250	-1.31860	31.97300	30.00740	K562	HNRNPC
SNRPA1	ENSG00000131876.12	697.49820	1510.80440	-1.11510	29.80620	28.46800	HepG2	RBM22
SNRPA1	ENSG00000131876.12	340.73710	1061.10190	-1.63880	29.63860	27.83730	HepG2	DDX3X
SNRPA1	ENSG00000131876.12	386.55780	986.29130	-1.35130	25.66310	24.02370	HepG2	RPLP0
SNRPA1	ENSG00000131876.12	289.79600	729.85030	-1.33260	24.84280	23.62840	HepG2	TIAL1
SNRPA1	ENSG00000131876.12	813.61000	1481.51340	-0.86470	23.22110	22.05310	HepG2	SSB
SNRPA1	ENSG00000131876.12	483.78110	893.83190	-0.88560	18.34780	17.01260	HepG2	PUS1
SNRPA1	ENSG00000131876.12	802.62520	1405.55860	-0.80830	17.84360	16.49450	HepG2	CELF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 139 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SNRPA1 is not available on ENCORE database.

28 RBPs can affect the splicing of SNRPA1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SNRPA1	ENSG00000131876.12	chr15	-	101827860	101827907	101825930	101827215	101832166	101832237	-0.06900	0.00000	excluded	K562	SF3B4
SE	SNRPA1	ENSG00000131876.12	chr15	-	101826418	101826498	101825930	101826006	101827112	101827215	-0.10000	0.00001	excluded	HepG2	U2AF1
SE	SNRPA1	ENSG00000131876.12	chr15	-	101827860	101827907	101827112	101827215	101835301	101835418	-0.06300	0.00003	excluded	K562	AKAP8L
SE	SNRPA1	ENSG00000131876.12	chr15	-	101826418	101826498	101825930	101826006	101827112	101827215	-0.08100	0.00001	excluded	HepG2	DDX59
SE	SNRPA1	ENSG00000131876.12	chr15	-	101832166	101832245	101827860	101827907	101835301	101835487	-0.20100	0.00000	excluded	HepG2	U2AF2
SE	SNRPA1	ENSG00000131876.12	chr15	-	101826418	101826602	101825930	101826006	101827112	101827215	-0.09100	0.00005	excluded	HepG2	U2AF2
SE	SNRPA1	ENSG00000131876.12	chr15	-	101826418	101826498	101825930	101826006	101827112	101827295	-0.10300	0.00000	excluded	K562	AQR
SE	SNRPA1	ENSG00000131876.12	chr15	-	101827860	101827907	101827112	101827215	101832166	101832245	-0.06700	0.00000	excluded	K562	AQR
SE	SNRPA1	ENSG00000131876.12	chr15	-	101827860	101827907	101827112	101827215	101835301	101835418	-0.15400	0.00000	excluded	K562	PUS1
SE	SNRPA1	ENSG00000131876.12	chr15	-	101826418	101826498	101825930	101826006	101827112	101827215	-0.06100	0.00000	excluded	K562	PUS1

Showing 1 to 10 of 71 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SNRPA1

General Information

Functions

Localization

Domains (AlphaFold: SNRPA1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SNRPA1 is not avaliable on ENCORE database.

18 proteins are bound to SNRPA1 RNA:

eCLIP assay for SNRPA1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SNRPA1 is not available on ENCORE database.

114 RBPs can affect the gene expression of SNRPA1 :

The Knockdown/knockout RNA-Seq assay for SNRPA1 is not available on ENCORE database.

28 RBPs can affect the splicing of SNRPA1 :

The Knockdown/knockout RNA-Seq assay for SNRPA1 is not avaliable on ENCORE database.