SNAPC3

General Information

Gene Name       : SNAPC3
Gene ID             : ENSG00000164975.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SNAPC3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNAPC3ENSG00000164975.1523.3520.6722.01ENCSR000AEF
HepG2SNAPC3ENSG00000164975.1512.7322.1317.43ENCSR985KAT
K562SNAPC3ENSG00000164975.1512.1816.1014.14ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
SNAPC3Ribo-STAMP-293TshRNABGRSLV06-41,BGRSLV06-42BGRSLV06-1,BGRSLV06-2NotSatisfiedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNAPC3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNAPC3 RNA is bound by 14 proteins.  







eCLIP assay for SNAPC3 is not avaliable on ENCORE database.





14 proteins are bound to SNAPC3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr91546351315463600+3'-UTR,intron-Distal4.486396.07385K562GTF2F1
chr91546350515463619+3'-UTR,intron-Distal3.281645.63113HepG2GTF2F1
chr91546350015463589+3'-UTR,intron-Distal3.210063.29499HepG2PRPF4
chr91546013915460208+3'-UTR3.905013.54514K562TIA1
chr91546006715460139+3'-UTR4.097663.98488K562TIA1
chr91546351015463599+3'-UTR,intron-Distal5.5631511.85167K562HNRNPL
chr91546207315462155+3'-UTR,intron-Distal3.008319.05002HepG2HNRNPL
chr91546071715460791+3'-UTR,intron-Distal3.132734.26467K562UPF1
chr91546164015461749+3'-UTR4.109798.94445HepG2BCLAF1
chr91542287415422966+5'-UTR,CDS3.142965.56278K562NCBP2
chr91544709215447183+5'-UTR,CDS,intron-Distal,intron-Proximal5.3666216.99693HepG2BCLAF1
chr91542291115422965+CDS3.090204.63108HepG2PPIG
chr91545805315458066+CDS,intron-Proximal4.453404.60263HepG2LIN28B
chr91544469215444705+CDS,intron-Proximal5.6187511.16146HepG2BCLAF1
chr91544459715444638+CDS,intron-Proximal3.147216.33024HepG2BCLAF1
chr91545971415459774+CDS,intron-Proximal3.999026.03468HepG2LIN28B
chr91543357215433636+CDS,intron-Proximal3.627125.86107HepG2PPIG
chr91544718315447249+CDS,intron-Distal,intron-Proximal3.8088810.35753HepG2BCLAF1
chr91544458715444690+CDS,intron-Proximal3.271415.21025HepG2PPIG
chr91544463815444692+CDS3.7584110.68403HepG2BCLAF1
chr91545804515458066+CDS,intron-Proximal6.5641327.47112K562LIN28B
chr91543354715433633+CDS,intron-Proximal4.015527.39805K562DDX24
chr91542310615423191+CDS3.542035.18980HepG2SRSF9
chr91545315315453198+CDS3.334643.34848HepG2PPIG
chr91545971915459772+CDS7.0475042.05446K562LIN28B
chr91543355415433636+CDS,intron-Proximal3.328048.84415HepG2BCLAF1
chr91544717515447246+CDS,intron-Distal,intron-Proximal3.422564.93175HepG2GRWD1
chr91542316515423236+CDS,intron-Proximal3.657475.90285HepG2PRPF8
chr91545136215451400+CDS5.144985.68196HepG2BCLAF1
chr91545971515459719+CDS,intron-Proximal6.8305336.17898K562LIN28B
chr91545309415453199+CDS3.9365612.80995HepG2BCLAF1
chr91543354715433635+CDS,intron-Proximal4.588725.85497HepG2GRWD1
chr91542334615423405+intron-Distal4.648797.14115HepG2XPO5
chr91546535815465426+intron-Distal,intron-Proximal3.927723.48210HepG2HNRNPL
chr91546521115465298+intron-Distal3.752265.29549HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNAPC3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNAPC3 is not available on ENCORE database.

  • 121 RBPs can affect the levels of SNAPC3.  








The Knockdown/knockout RNA-Seq assay for SNAPC3 is not available on ENCORE database.





121 RBPs can affect the gene expression of SNAPC3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNAPC3ENSG00000164975.11991.656701369.02210-0.465203.798302.70410HepG2ABCF1
SNAPC3ENSG00000164975.11861.993801236.16340-0.520109.060608.08950HepG2ACO1
SNAPC3ENSG00000164975.11831.622601091.59180-0.392402.891501.87280HepG2ADAR
SNAPC3ENSG00000164975.11854.107501328.42980-0.637205.303404.59520HepG2AKAP1
SNAPC3ENSG00000164975.11615.203501242.04210-1.0136026.4742024.48000HepG2AKAP8L
SNAPC3ENSG00000164975.11553.550601099.20060-0.9897012.7972011.21260HepG2ASCC1
SNAPC3ENSG00000164975.111654.681101372.137700.270002.885502.18680HepG2AUH
SNAPC3ENSG00000164975.11583.96650898.00190-0.620803.874302.76440HepG2BCCIP
SNAPC3ENSG00000164975.11610.459101044.30450-0.774608.438507.14510HepG2CIRBP
SNAPC3ENSG00000164975.11669.621701235.97990-0.8842024.2220022.69490HepG2CKAP4
SNAPC3ENSG00000164975.11901.827401119.40990-0.311802.918701.87310HepG2YBX3
SNAPC3ENSG00000164975.11380.72970554.82920-0.543303.408002.22450HepG2CSTF2
SNAPC3ENSG00000164975.11708.078901143.31320-0.6912015.1543013.54720HepG2DDX19B
SNAPC3ENSG00000164975.11856.665301120.97850-0.388004.244102.83020HepG2DDX1
SNAPC3ENSG00000164975.11504.277801272.61360-1.3355018.3099016.84940HepG2DDX3X
SNAPC3ENSG00000164975.11693.528101182.69540-0.7701015.1871013.86800HepG2DKC1
SNAPC3ENSG00000164975.11747.123401099.18620-0.557007.872706.73630HepG2DNAJC21
SNAPC3ENSG00000164975.11812.419501089.46610-0.423306.466205.52790HepG2DNAJC2
SNAPC3ENSG00000164975.11604.801201054.60470-0.802203.369402.35940HepG2EEF2
SNAPC3ENSG00000164975.11801.910901050.92680-0.390102.545301.97650HepG2EIF2S1
SNAPC3ENSG00000164975.11813.944201161.48620-0.513003.627402.89770HepG2EIF4A3
SNAPC3ENSG00000164975.11735.194601130.70080-0.621004.165503.33050HepG2EIF4B
SNAPC3ENSG00000164975.111116.342801383.01340-0.309003.573002.64140HepG2EIF4G1
SNAPC3ENSG00000164975.11661.093301208.02810-0.8697014.1953012.38580HepG2EWSR1
SNAPC3ENSG00000164975.11763.374001153.79820-0.595905.544304.26990HepG2G3BP2
SNAPC3ENSG00000164975.11665.60250923.03870-0.471702.928901.87990HepG2GNB2L1
SNAPC3ENSG00000164975.11594.98950891.39930-0.583204.380303.58660HepG2GPKOW
SNAPC3ENSG00000164975.11691.804101157.13150-0.742105.591104.00290HepG2GRSF1
SNAPC3ENSG00000164975.11995.699801180.23390-0.245302.321701.42140HepG2HDGF
SNAPC3ENSG00000164975.11598.540501109.71660-0.8907012.3530011.14720HepG2HNRNPA1
SNAPC3ENSG00000164975.11756.290101234.34990-0.706708.824607.63810HepG2HNRNPC
SNAPC3ENSG00000164975.11652.126501226.18950-0.9110022.9239021.31130HepG2HNRNPU
SNAPC3ENSG00000164975.11884.940501437.85920-0.700304.118202.60490HepG2HSPD1
SNAPC3ENSG00000164975.11843.995401104.95480-0.388702.614901.95670HepG2IGF2BP2
SNAPC3ENSG00000164975.11940.634901252.51270-0.413106.993705.88280HepG2ILF2
SNAPC3ENSG00000164975.11869.081101130.06130-0.378805.344403.93710HepG2KIF1C
SNAPC3ENSG00000164975.111273.638701892.83860-0.571604.450503.38830HepG2LARP4
SNAPC3ENSG00000164975.11677.90930949.59130-0.486202.754301.54410HepG2LIN28B
SNAPC3ENSG00000164975.11550.35190765.84010-0.476703.079901.38040HepG2MARK2
SNAPC3ENSG00000164975.11680.183401178.63400-0.793107.875106.85390HepG2MATR3
SNAPC3ENSG00000164975.11788.800201206.43290-0.613005.389704.51930HepG2NCBP2
SNAPC3ENSG00000164975.11390.10650640.24020-0.714703.082401.39760HepG2PA2G4
SNAPC3ENSG00000164975.11806.399201142.39610-0.502502.366001.55670HepG2PABPC1
SNAPC3ENSG00000164975.11810.852501074.57000-0.406202.726102.00940HepG2PABPC4
SNAPC3ENSG00000164975.11927.574701213.72340-0.387904.835603.75300HepG2PARN
SNAPC3ENSG00000164975.11645.347601105.70730-0.7768015.5208014.27110HepG2PCBP1
SNAPC3ENSG00000164975.11466.91920708.04940-0.600702.567801.38750HepG2PKM
SNAPC3ENSG00000164975.11740.009301093.66380-0.563607.987606.78480HepG2PPIL4
SNAPC3ENSG00000164975.11813.250201326.95980-0.706409.781708.75490HepG2PUF60
SNAPC3ENSG00000164975.11946.969801408.61810-0.572908.642907.71820HepG2PUM1
SNAPC3ENSG00000164975.11973.346001407.59430-0.532207.044605.99340HepG2PUM2
SNAPC3ENSG00000164975.11982.889901259.12510-0.357304.806004.03580HepG2PUS1
SNAPC3ENSG00000164975.111035.788701316.75400-0.346303.686503.11060HepG2RBM22
SNAPC3ENSG00000164975.111352.222301105.875300.290002.251301.63780HepG2RBM25
SNAPC3ENSG00000164975.11714.419301090.14100-0.609704.927503.58510HepG2RBM27
SNAPC3ENSG00000164975.11656.23290885.23890-0.431902.510301.50090HepG2RCC2
SNAPC3ENSG00000164975.11826.410201252.12730-0.599509.810108.90640HepG2NELFE
SNAPC3ENSG00000164975.11726.309401058.72970-0.543702.245701.39230HepG2RPS10
SNAPC3ENSG00000164975.11460.36250833.02980-0.855604.121403.38660HepG2RPS19
SNAPC3ENSG00000164975.11737.387601005.46650-0.447402.995202.16390HepG2RPS2
SNAPC3ENSG00000164975.11791.440501254.59940-0.664705.134004.04500HepG2RPS3A
SNAPC3ENSG00000164975.11701.041901026.29020-0.549904.329502.97080HepG2RPS5
SNAPC3ENSG00000164975.11885.221101091.97870-0.302803.340202.64330HepG2SAFB2
SNAPC3ENSG00000164975.11436.15760836.24370-0.939104.253803.09530HepG2SERBP1
SNAPC3ENSG00000164975.11981.382301458.61490-0.571704.418203.55550HepG2SF3A3
SNAPC3ENSG00000164975.11585.52740842.02500-0.524104.196803.34460HepG2SF3B1
SNAPC3ENSG00000164975.11841.493801171.37110-0.477206.557805.71000HepG2SF3B4
SNAPC3ENSG00000164975.11684.314101273.43620-0.8960025.9585024.31640HepG2SMN1
SNAPC3ENSG00000164975.11783.097801310.16950-0.7425015.6835014.36370HepG2SRSF5
SNAPC3ENSG00000164975.11814.11610994.70000-0.289002.869002.30960HepG2SRSF9
SNAPC3ENSG00000164975.111024.575701291.24350-0.333704.080003.48310HepG2SSB
SNAPC3ENSG00000164975.111287.753801490.03220-0.210502.176401.61240HepG2SUCLG1
SNAPC3ENSG00000164975.11920.798501098.97860-0.255202.144801.63960HepG2TAF15
SNAPC3ENSG00000164975.11897.774401406.56840-0.647802.595401.55850HepG2TBRG4
SNAPC3ENSG00000164975.111337.743901009.806700.405604.266603.23700HepG2TIA1
SNAPC3ENSG00000164975.11728.826501191.48950-0.7091011.0152010.13180HepG2TIAL1
SNAPC3ENSG00000164975.11796.337101202.12190-0.5941010.522909.52830HepG2TRIM56
SNAPC3ENSG00000164975.11879.630301296.36990-0.559506.831805.36230HepG2TUFM
SNAPC3ENSG00000164975.111058.228601372.17820-0.374802.531301.73220HepG2UBE2L3
SNAPC3ENSG00000164975.11937.037501293.57030-0.465207.544806.48430HepG2UPF1
SNAPC3ENSG00000164975.111060.587001248.88840-0.235802.111301.57380HepG2UTP3
SNAPC3ENSG00000164975.11794.146801123.70660-0.500803.082501.91850HepG2XPO5
SNAPC3ENSG00000164975.11450.84450865.24220-0.940507.377306.20740HepG2XRN2
SNAPC3ENSG00000164975.111202.316001422.67700-0.242802.956402.39740HepG2ZNF622
SNAPC3ENSG00000164975.111474.824002108.99120-0.516006.174205.17160K562AKAP8L
SNAPC3ENSG00000164975.111478.085102148.38350-0.539507.932205.74030K562APOBEC3C
SNAPC3ENSG00000164975.111175.197601650.74390-0.490201.902301.39900K562AQR
SNAPC3ENSG00000164975.11434.96730593.14470-0.447502.880701.80170K562CCAR1
SNAPC3ENSG00000164975.111957.362202422.18360-0.307402.942001.72100K562CCDC124
SNAPC3ENSG00000164975.113838.339502994.509800.358104.072402.87980K562CELF1
SNAPC3ENSG00000164975.111491.111202109.67360-0.500607.229606.24410K562DDX47
SNAPC3ENSG00000164975.11595.17300882.53600-0.568304.851203.62710K562EFTUD2
SNAPC3ENSG00000164975.11951.138601449.41230-0.6077011.430508.94180K562EIF2S1
SNAPC3ENSG00000164975.11795.122201090.62140-0.455905.605704.63510K562EIF2S2
SNAPC3ENSG00000164975.11662.70470830.05830-0.324802.594501.82200K562EIF3G
SNAPC3ENSG00000164975.11821.966701378.57230-0.7460010.486008.87000K562EIF4A3
SNAPC3ENSG00000164975.112121.129202434.86770-0.199002.289701.43160K562EIF4G2
SNAPC3ENSG00000164975.11690.209901433.66080-1.0546027.6659025.88410K562FXR1
SNAPC3ENSG00000164975.111950.983301514.947600.364802.108101.50240K562G3BP2
SNAPC3ENSG00000164975.111622.314301257.570300.367304.482903.03560K562GLRX3
SNAPC3ENSG00000164975.111209.536001453.35750-0.264902.041401.38610K562GRSF1
SNAPC3ENSG00000164975.11645.200201203.00890-0.8988014.4706013.19250K562HNRNPC
SNAPC3ENSG00000164975.11830.754301074.32530-0.370902.989701.79870K562HNRNPF
SNAPC3ENSG00000164975.111355.645501906.68890-0.492105.711104.13900K562HNRNPL
SNAPC3ENSG00000164975.111149.077501606.40470-0.483402.671701.88950K562HSPD1
SNAPC3ENSG00000164975.11916.012701165.06910-0.347002.740801.36100K562LARP7
SNAPC3ENSG00000164975.111007.001201662.74420-0.723507.117005.74230K562MAGOH
SNAPC3ENSG00000164975.111053.673801659.47570-0.655307.401905.80250K562MATR3
SNAPC3ENSG00000164975.11640.69390869.76690-0.441003.041901.66650K562NONO
SNAPC3ENSG00000164975.111769.971101468.995000.268804.199003.30130K562NSUN2
SNAPC3ENSG00000164975.11659.556801376.40330-1.061304.886903.46670K562PABPN1
SNAPC3ENSG00000164975.111015.108701479.55640-0.543504.610603.34230K562PCBP2
SNAPC3ENSG00000164975.11695.34670885.71050-0.349102.916302.09300K562POLR2G
SNAPC3ENSG00000164975.11392.29050858.81100-1.1304015.3779013.59410K562PRPF8
SNAPC3ENSG00000164975.11890.004401615.40860-0.8600011.025609.76200K562PTBP1
SNAPC3ENSG00000164975.111403.529102656.53810-0.9205019.2079016.98570K562PUF60
SNAPC3ENSG00000164975.112353.589502768.54770-0.234303.042102.03820K562PUM2
SNAPC3ENSG00000164975.11847.085001549.36030-0.8711011.260409.39380K562RBM22
SNAPC3ENSG00000164975.111123.886001510.04270-0.426103.539501.90610K562RBM34
SNAPC3ENSG00000164975.111132.020301630.36590-0.526304.735803.26150K562NELFE
SNAPC3ENSG00000164975.11930.191001535.17860-0.722808.323406.47720K562RPS3
SNAPC3ENSG00000164975.11603.59170789.21340-0.386802.828601.73400K562SAFB
SNAPC3ENSG00000164975.111058.841601575.48980-0.573308.460606.92660K562SF3B4
SNAPC3ENSG00000164975.11722.22070932.95510-0.369402.627801.63670K562SRFBP1
SNAPC3ENSG00000164975.11992.463001583.56170-0.674109.030607.76170K562SRSF1
SNAPC3ENSG00000164975.111129.077901482.05210-0.392503.739602.48780K562SRSF4
SNAPC3ENSG00000164975.111061.00960856.213800.309302.726801.46160K562SSB
SNAPC3ENSG00000164975.111975.608201554.583900.345702.684901.34860K562SSRP1
SNAPC3ENSG00000164975.112278.126401421.753400.680106.536804.54230K562STAU1
SNAPC3ENSG00000164975.11690.02420888.40130-0.364602.969602.11610K562SYNCRIP
SNAPC3ENSG00000164975.11840.081301602.83440-0.9320011.9128010.26370K562TARDBP
SNAPC3ENSG00000164975.111041.700401546.07100-0.569706.670005.31360K562TIA1
SNAPC3ENSG00000164975.111201.219401516.76090-0.336502.724201.64190K562TRA2A
SNAPC3ENSG00000164975.112505.182902995.69890-0.258002.846301.42140K562UBE2L3
SNAPC3ENSG00000164975.11685.68750880.00220-0.360002.291301.37270K562UCHL5
SNAPC3ENSG00000164975.111777.658201332.790400.415403.070702.15050K562WDR3
SNAPC3ENSG00000164975.112399.133401859.167700.367802.199501.44080K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNAPC3 is not available on ENCORE database.





1 RBPs can affect the splicing of SNAPC3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNAPC3ENSG00000164975.11chr9+154470921544724215444599154447041545131715451400-0.055000.003100.05119excludedK562SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNAPC3 is not avaliable on ENCORE database.