SDF2L1

General Information

Gene Name       : SDF2L1
Gene ID             : ENSG00000128228.4
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SDF2L1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SDF2L1ENSG00000128228.40.212.671.44ENCSR000AEF
HepG2SDF2L1ENSG00000128228.454.546.2130.38ENCSR985KAT
K562SDF2L1ENSG00000128228.459.3622.7141.03ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SDF2L1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SDF2L1 RNA is bound by 24 proteins.  







eCLIP assay for SDF2L1 is not avaliable on ENCORE database.





24 proteins are bound to SDF2L1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr222199853521998570+3'-UTR3.3090010.30598K562DROSHA
chr222199846721998537+3'-UTR3.894447.91436K562EIF3G
chr222199850921998534+3'-UTR4.14526400.00000K562PABPC4
chr222199846521998566+3'-UTR5.9158512.96671HepG2LARP4
chr222199853521998563+3'-UTR3.4108710.46894K562FTO
chr222199847121998567+3'-UTR4.1965822.41455K562APOBEC3C
chr222199853421998544+3'-UTR3.7564231.87319K562PABPC4
chr222199846921998559+3'-UTR3.1985720.78662K562XRCC6
chr222199847121998570+3'-UTR4.6098540.91765K562TARDBP
chr222199854421998565+3'-UTR4.1790236.35777K562PABPC4
chr222199847021998509+3'-UTR4.31028400.00000K562PABPC4
chr222199846421998522+3'-UTR4.206356.49041HepG2RPS3
chr222199846821998559+3'-UTR4.775684.86763HepG2PCBP2
chr222199846821998574+3'-UTR4.32828400.00000K562DDX6
chr222199853421998568+3'-UTR3.5264510.05402K562LARP4
chr222199661021996784+5'-UTR,CDS4.59493400.00000K562DDX3X
chr222199662421996743+5'-UTR,CDS3.5361521.41500K562DROSHA
chr222199660721996664+5'-UTR,CDS7.2057247.80325HepG2DDX3X
chr222199661921996719+5'-UTR,CDS4.6851038.34859K562GEMIN5
chr222199729721997348+CDS,intron-Proximal4.744663.77218HepG2SND1
chr222199722721997242+CDS4.7417811.01276HepG2DDX3X
chr222199818821998281+CDS3.082329.56273K562SND1
chr222199711821997181+CDS,intron-Proximal3.5508113.50820K562EFTUD2
chr222199816121998193+CDS,intron-Proximal5.4330213.75908K562AQR
chr222199712221997164+CDS,intron-Proximal3.6622317.38182K562PRPF8
chr222199820221998285+CDS3.405238.02669K562SRSF1
chr222199718621997241+CDS3.356436.83669K562SND1
chr222199713521997176+CDS,intron-Proximal4.8153440.59431K562AQR
chr222199662621996692+CDS3.1993211.28901K562RPS3
chr222199841721998448+CDS4.1954420.45098K562YBX3
chr222199663221996770+CDS3.7745781.64231K562FTO
chr222199711521997177+CDS,intron-Proximal4.692245.01842HepG2PRPF8
chr222199815021998250+CDS,intron-Proximal4.3766025.83502K562BUD13
chr222199718421997197+CDS3.0418413.00968K562YBX3
chr222199666421996748+CDS6.27770400.00000HepG2DDX3X
chr222199704921997069+intron-Distal,intron-Proximal4.742664.07596K562GTF2F1
chr222199685421996915+intron-Distal,intron-Proximal4.0986120.46922K562AQR
chr222199789921997984+intron-Distal3.3920711.56629K562EFTUD2
chr222199691521996989+intron-Distal3.7795716.68653K562AQR
chr222199704621997070+intron-Distal,intron-Proximal4.498718.29734K562DROSHA
chr222199689821996959+intron-Distal,intron-Proximal3.658658.33653K562PRPF8
chr222199743121997453+intron-Distal,intron-Proximal4.740563.78571K562GPKOW
chr222199700521997118+intron-Distal,intron-Proximal4.8048328.26723K562EFTUD2
chr222199703121997079+intron-Distal,intron-Proximal3.418965.62058K562CSTF2T
chr222199703621997098+intron-Distal,intron-Proximal6.1888317.59745K562PRPF8
chr222199805221998155+intron-Distal,intron-Proximal3.1166910.58868K562EFTUD2
chr222199692821997005+intron-Distal4.5761214.29804K562EFTUD2
chr222199681221996819+intron-Proximal6.6512732.05551K562AQR
chr222199812121998175+intron-Proximal4.1872318.48034K562SF3B4
chr222199734721997351+intron-Proximal5.7341127.63431K562AQR
chr222199712221997135+intron-Proximal5.0462232.94784K562AQR
chr222199737921997390+intron-Proximal5.6887039.91050K562AQR
chr222199681921996836+intron-Proximal6.1392531.92642K562AQR
chr222199711421997122+intron-Proximal5.3035833.21848K562AQR
chr222199683621996854+intron-Proximal5.5552737.72786K562AQR
chr222199734721997396+intron-Proximal3.310659.32736K562PRPF8
chr222199739321997445+intron-Proximal3.696255.02403K562SF3B4
chr222199707421997122+intron-Proximal4.617168.05832K562SF3B4
chr222199741621997425+intron-Proximal3.460716.12893K562BUD13
chr222199711421997122+intron-Proximal6.1917817.98611K562PRPF8
chr222199739521997406+intron-Proximal5.0069812.21485K562AQR
chr222199735121997379+intron-Proximal5.6007334.55728K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SDF2L1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SDF2L1 is not available on ENCORE database.

  • 117 RBPs can affect the levels of SDF2L1.  








The Knockdown/knockout RNA-Seq assay for SDF2L1 is not available on ENCORE database.





117 RBPs can affect the gene expression of SDF2L1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SDF2L1ENSG00000128228.4250.77600161.123900.638103.967203.26340HepG2ACO1
SDF2L1ENSG00000128228.4287.9031070.418802.0315016.1148014.94090HepG2AKAP1
SDF2L1ENSG00000128228.4104.5486058.261700.843502.408501.67060HepG2ASCC1
SDF2L1ENSG00000128228.442.9972084.79980-0.979802.644202.05800HepG2BOP1
SDF2L1ENSG00000128228.4136.5313055.353901.302405.596304.52030HepG2CIRBP
SDF2L1ENSG00000128228.433.9197077.84890-1.198603.169902.43880HepG2CPSF6
SDF2L1ENSG00000128228.471.06330143.16760-1.010503.158301.78620HepG2DDX27
SDF2L1ENSG00000128228.4162.0791067.447401.264805.889205.00840HepG2DDX3X
SDF2L1ENSG00000128228.430.0114088.40380-1.558604.534503.29290HepG2DDX59
SDF2L1ENSG00000128228.4101.9937057.958800.815302.179001.62440HepG2DDX6
SDF2L1ENSG00000128228.483.7487051.298200.707102.004801.43300HepG2DNAJC2
SDF2L1ENSG00000128228.483.8641040.385601.054102.476601.60170HepG2EEF2
SDF2L1ENSG00000128228.473.8230033.665201.132702.888001.75680HepG2EFTUD2
SDF2L1ENSG00000128228.426.4598061.33220-1.212802.815301.69970HepG2AGO1
SDF2L1ENSG00000128228.483.2847032.782701.345003.651602.62140HepG2EIF3D
SDF2L1ENSG00000128228.4166.7589061.542301.438007.390806.34650HepG2EIF4A3
SDF2L1ENSG00000128228.4115.0224059.938500.940302.412001.76860HepG2EIF4B
SDF2L1ENSG00000128228.479.27640147.82510-0.898904.322003.31960HepG2EIF4G1
SDF2L1ENSG00000128228.4162.81960286.67220-0.816105.885305.06300HepG2ETF1
SDF2L1ENSG00000128228.4267.24960157.453200.763204.690803.60850HepG2EWSR1
SDF2L1ENSG00000128228.4213.4027062.122901.780306.567305.52750HepG2FXR1
SDF2L1ENSG00000128228.4114.5871057.612700.991903.397202.66360HepG2G3BP1
SDF2L1ENSG00000128228.4106.74720153.83150-0.527202.182001.30690HepG2HDGF
SDF2L1ENSG00000128228.4210.6008058.374001.8510012.9814011.57300HepG2HNRNPK
SDF2L1ENSG00000128228.4220.99340136.554700.694403.625602.86040HepG2HNRNPL
SDF2L1ENSG00000128228.441.1327084.21210-1.033702.638902.02190HepG2HNRNPLL
SDF2L1ENSG00000128228.459.2334025.197301.233002.517401.34870HepG2HSPD1
SDF2L1ENSG00000128228.498.9918058.556600.757402.045401.45580HepG2IGF2BP2
SDF2L1ENSG00000128228.479.69900147.29190-0.886004.405903.13040HepG2KIF1C
SDF2L1ENSG00000128228.4148.8210063.056301.238803.788702.46010HepG2LARP7
SDF2L1ENSG00000128228.4271.3731062.144702.1265019.3517017.69910HepG2MAGOH
SDF2L1ENSG00000128228.4241.1901062.487801.9484014.2599012.90740HepG2MATR3
SDF2L1ENSG00000128228.430.0007085.89660-1.517603.703602.57240HepG2MTPAP
SDF2L1ENSG00000128228.4216.3368063.955801.7580012.0492010.77030HepG2NCBP2
SDF2L1ENSG00000128228.458.2284023.888001.285302.792401.35550HepG2NKRF
SDF2L1ENSG00000128228.4259.03880148.626400.801404.665303.67540HepG2NOL12
SDF2L1ENSG00000128228.427.8656074.67390-1.422103.527502.68220HepG2NSUN2
SDF2L1ENSG00000128228.4217.1665059.600101.8653017.9118016.58370HepG2PCBP1
SDF2L1ENSG00000128228.466.13280117.97180-0.835002.024901.32960HepG2PRPF8
SDF2L1ENSG00000128228.4160.7521060.659101.405908.776307.91310HepG2PTBP1
SDF2L1ENSG00000128228.4260.78230150.573100.792305.381504.61040HepG2PUM1
SDF2L1ENSG00000128228.4316.27260150.474701.071501.966401.39500HepG2PUM2
SDF2L1ENSG00000128228.4167.5266067.496301.311407.548506.73320HepG2NELFE
SDF2L1ENSG00000128228.431.66890108.53980-1.777107.504906.46130HepG2RPLP0
SDF2L1ENSG00000128228.472.0308032.229801.160102.900902.08240HepG2RPS3A
SDF2L1ENSG00000128228.484.3000051.438600.712601.896801.34690HepG2SAFB2
SDF2L1ENSG00000128228.433.9878083.35040-1.294203.765702.95450HepG2SF3B1
SDF2L1ENSG00000128228.492.0184046.062600.998203.094802.07610HepG2SMNDC1
SDF2L1ENSG00000128228.421.9716092.74300-2.077606.732505.50670HepG2SNRNP70
SDF2L1ENSG00000128228.4113.61640270.61360-1.2521011.5311010.69720HepG2SRFBP1
SDF2L1ENSG00000128228.4163.1765065.903301.307907.324106.64020HepG2SRSF1
SDF2L1ENSG00000128228.4269.42040159.288600.758104.763303.98610HepG2SUCLG1
SDF2L1ENSG00000128228.434.21590152.34300-2.154607.944506.89320HepG2SUPV3L1
SDF2L1ENSG00000128228.4220.97710138.561700.673302.438701.62170HepG2TUFM
SDF2L1ENSG00000128228.4172.3509099.173400.797204.091603.26780HepG2UPF1
SDF2L1ENSG00000128228.4199.7696095.747601.060906.849005.97790HepG2UTP3
SDF2L1ENSG00000128228.489.4546049.485600.854002.268401.31140HepG2XRCC6
SDF2L1ENSG00000128228.4513.34610732.01830-0.511903.847002.37980K562ABCF1
SDF2L1ENSG00000128228.43989.985501599.424901.3187012.3731011.26660K562AGGF1
SDF2L1ENSG00000128228.42784.001001871.938500.572507.923805.38110K562AKAP1
SDF2L1ENSG00000128228.43322.214101757.967300.918102.717301.74710K562AKAP8
SDF2L1ENSG00000128228.45514.287101664.382601.7281016.8812015.01340K562AKAP8L
SDF2L1ENSG00000128228.41589.325502699.50190-0.764303.512402.86710K562AQR
SDF2L1ENSG00000128228.44220.837401746.543101.2729010.967608.99190K562ATP5C1
SDF2L1ENSG00000128228.4135.07630243.08860-0.847704.469003.34940K562BOP1
SDF2L1ENSG00000128228.4326.38470509.91770-0.643704.261002.43970K562BUD13
SDF2L1ENSG00000128228.41404.82330833.995700.752203.369701.94360K562CIRBP
SDF2L1ENSG00000128228.4419.72910709.26190-0.756902.618001.59070K562CNOT7
SDF2L1ENSG00000128228.4157.13690258.47980-0.718004.029603.08410K562CPSF6
SDF2L1ENSG00000128228.41461.833602462.61540-0.752402.305801.41630K562CELF1
SDF2L1ENSG00000128228.4965.03550661.373200.545004.297601.71750K562DDX28
SDF2L1ENSG00000128228.42761.011401896.911700.541402.479801.49690K562DDX3X
SDF2L1ENSG00000128228.43089.621701923.270100.6838017.3186014.03440K562DDX6
SDF2L1ENSG00000128228.42886.056801790.314500.688803.339002.36630K562DKC1
SDF2L1ENSG00000128228.4252.51030411.39880-0.704203.980702.34780K562DNAJC21
SDF2L1ENSG00000128228.4244.37410436.07770-0.835504.062701.89070K562DNAJC2
SDF2L1ENSG00000128228.4799.36710618.719000.369502.153001.34770K562EFTUD2
SDF2L1ENSG00000128228.41529.444901218.110300.328303.680502.87170K562EIF2S2
SDF2L1ENSG00000128228.41137.90720662.236400.780907.211605.41640K562EIF3D
SDF2L1ENSG00000128228.4506.06510330.897300.612804.901503.85760K562EIF3G
SDF2L1ENSG00000128228.41270.541201981.88870-0.641402.703801.89240K562EIF4A3
SDF2L1ENSG00000128228.4287.81120559.58990-0.959207.384404.66280K562ESF1
SDF2L1ENSG00000128228.4104.71960262.98390-1.3284010.096608.41250K562FMR1
SDF2L1ENSG00000128228.4101.77560222.89680-1.131006.686905.20430K562FTO
SDF2L1ENSG00000128228.41305.911101869.74700-0.517803.241401.30160K562FUBP3
SDF2L1ENSG00000128228.41504.844902061.09530-0.453803.103702.46830K562FXR1
SDF2L1ENSG00000128228.41262.56640743.996000.762903.817502.10350K562G3BP1
SDF2L1ENSG00000128228.433.31220277.93100-3.0606017.7095015.50380K562G3BP2
SDF2L1ENSG00000128228.42242.75880966.570801.214203.830002.31650K562HNRNPA2B1
SDF2L1ENSG00000128228.4362.67640663.65800-0.871805.683003.43980K562HNRNPAB
SDF2L1ENSG00000128228.4295.98780647.50550-1.129403.302702.65870K562HNRNPC
SDF2L1ENSG00000128228.42787.987702106.414500.404303.740802.70030K562HNRNPU
SDF2L1ENSG00000128228.42370.13160778.629601.605906.279304.46690K562IGF2BP2
SDF2L1ENSG00000128228.41561.59430791.775300.9798018.0368014.96670K562IGF2BP3
SDF2L1ENSG00000128228.4386.62250647.09410-0.743003.243201.68690K562ILF2
SDF2L1ENSG00000128228.480.95510210.71360-1.380107.301905.69930K562KRR1
SDF2L1ENSG00000128228.41294.78440817.823100.662808.961607.39830K562MAGOH
SDF2L1ENSG00000128228.43372.666501690.753000.996106.892704.89350K562MAK16
SDF2L1ENSG00000128228.43412.148501978.358200.786303.471402.43500K562MBNL1
SDF2L1ENSG00000128228.4960.475901341.96880-0.482502.421301.66370K562MTPAP
SDF2L1ENSG00000128228.41579.527801978.91990-0.325202.675301.46680K562NCBP2
SDF2L1ENSG00000128228.4988.095101490.82910-0.593403.462602.63710K562NSUN2
SDF2L1ENSG00000128228.4428.86040681.39080-0.668003.787202.31840K562PABPC1
SDF2L1ENSG00000128228.41904.28110845.738801.170908.463906.40850K562PABPN1
SDF2L1ENSG00000128228.41506.19450799.649000.913407.033604.82470K562PCBP1
SDF2L1ENSG00000128228.4314.43960614.58610-0.966806.707605.41120K562PCBP3
SDF2L1ENSG00000128228.42823.106302084.382300.437603.981002.07140K562PKM
SDF2L1ENSG00000128228.4281.27460471.40350-0.745006.593705.36730K562POLR2G
SDF2L1ENSG00000128228.4886.78480597.435400.569702.979702.12380K562PPIG
SDF2L1ENSG00000128228.4333.32900630.84360-0.920305.188202.70490K562PPIL4
SDF2L1ENSG00000128228.41764.630501005.748000.811004.041502.15130K562PPP1R8
SDF2L1ENSG00000128228.4915.59670602.090600.604604.177303.25610K562PRPF8
SDF2L1ENSG00000128228.41362.51390794.602700.7779013.0911011.70280K562PTBP1
SDF2L1ENSG00000128228.41210.380302324.08130-0.941202.910201.81340K562PUM1
SDF2L1ENSG00000128228.43960.413601649.834901.2632010.039809.05170K562PUS1
SDF2L1ENSG00000128228.4476.84590310.724900.617805.239102.67410K562QKI
SDF2L1ENSG00000128228.44114.587301608.158601.3552010.252909.13620K562RBM15
SDF2L1ENSG00000128228.41159.824301539.46530-0.408504.229402.23860K562RBM17
SDF2L1ENSG00000128228.41069.49830761.663600.489604.556803.44720K562RBM22
SDF2L1ENSG00000128228.4907.15730613.134300.565002.664301.86540K562RPS19
SDF2L1ENSG00000128228.4265.29760632.45830-1.253407.752104.92670K562RPS3A
SDF2L1ENSG00000128228.4225.64360434.27350-0.944608.492706.07160K562SDAD1
SDF2L1ENSG00000128228.41584.80770773.601201.034505.505703.62480K562SF1
SDF2L1ENSG00000128228.4606.741501471.39320-1.2780010.166208.67520K562SF3A3
SDF2L1ENSG00000128228.4111.89410234.68620-1.068605.829504.38430K562SF3B1
SDF2L1ENSG00000128228.4299.88720421.33620-0.490602.834901.55630K562SLBP
SDF2L1ENSG00000128228.41483.03790779.030100.928706.986305.87290K562SRSF1
SDF2L1ENSG00000128228.4411.18690255.850900.684404.588103.17190K562SRSF4
SDF2L1ENSG00000128228.41749.76660735.870301.249509.562707.47370K562SRSF5
SDF2L1ENSG00000128228.4362.02280690.43250-0.9314010.238907.50470K562SSRP1
SDF2L1ENSG00000128228.4396.46310631.46450-0.671505.264903.45330K562STAU1
SDF2L1ENSG00000128228.4436.27490582.66290-0.417402.294101.37380K562SUPV3L1
SDF2L1ENSG00000128228.471.05120272.79850-1.940905.384403.06070K562TAF15
SDF2L1ENSG00000128228.41454.24710788.311700.883304.825303.87860K562TARDBP
SDF2L1ENSG00000128228.4152.91230289.44270-0.920604.287602.25870K562TBRG4
SDF2L1ENSG00000128228.41593.67630760.446601.067304.092903.06860K562TIA1
SDF2L1ENSG00000128228.4241.70970558.43690-1.208103.128902.12760K562TIAL1
SDF2L1ENSG00000128228.41621.17410746.502501.118703.324802.10760K562TRA2A
SDF2L1ENSG00000128228.4124.38260269.08920-1.113306.103104.33860K562U2AF1
SDF2L1ENSG00000128228.463.60930278.01410-2.1278014.8625012.97900K562U2AF2
SDF2L1ENSG00000128228.4768.110701406.73190-0.873005.081903.96550K562WDR43
SDF2L1ENSG00000128228.42265.918403041.26130-0.424604.796803.61360K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SDF2L1 is not available on ENCORE database.





2 RBPs can affect the splicing of SDF2L1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESDF2L1ENSG00000128228.4chr22+2199752521997600219971502199734721998182219985870.061000.000000.00000includedK562AQR
A5SSSDF2L1ENSG00000128228.4chr22+219974632199760421997463219976002199818221998587-0.412000.002330.07738shorterK562PUS1
A5SSSDF2L1ENSG00000128228.4chr22+219975252199777421997525219976002199818221998587-0.500000.000270.00628shorterK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SDF2L1 is not avaliable on ENCORE database.