PRPF39

General Information

Gene Name       : PRPF39
Gene ID             : ENSG00000185246.17
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PRPF39)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRPF39ENSG00000185246.1735.3926.7631.08ENCSR000AEF
HepG2PRPF39ENSG00000185246.1724.7527.6326.19ENCSR985KAT
K562PRPF39ENSG00000185246.1715.1216.7015.91ENCSR000AEO

Assays

3 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 4149ENCSR884RBWPRPF39HepG2ReleasedENCAB901VHLENCSR638LZI  
eCLIPeCLIP: 4114ENCSR348MQLPRPF39HepG2ReleasedENCAB901VHLENCSR304BTG  
knockdown followed by RNA-seq PRPF39-BGHcLV18-HepG2ENCSR511QFJPRPF39HepG2ReleasedENCSR670KAS   CRISPRKD% = 79.0,76.8






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
PRPF394149HepG2ENCSR884RBWENCSR638LZIENCAB901VHLPA5-21627UC2743613BReleasedENCODE4
PRPF394114HepG2ENCSR348MQLENCSR304BTGENCAB901VHLPA5-21627UC2743613BReleasedENCODE4


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
PRPF39ENCAB901VHLPA5-21627UC2743613BReleased, ENCODE4BGKcLV44-45, Submitting, ENCORE2


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
PRPF39K562CRISPRBGKcLV17-41,BGKcLV17-42BGKcLV17-1,BGKcLV17-20.0,0.0NotSatisfiedENCODE4
PRPF39K562CRISPRBGKcLV19-35,BGKcLV19-36BGKcLV19-1,BGKcLV19-210.5,34.8NotSatisfiedENCODE4
PRPF39K562CRISPRPRPF39-BGKcLV44-45,PRPF39-BGKcLV44-46NT-BGKcLV44-1,NT-BGKcLV44-267.4,71.8SequencedENCORE2
PRPF39HepG2CRISPRENCSR511QFJENCSR670KASPRPF39-BGHcLV18-37,PRPF39-BGHcLV18-38NT-BGHcLV18-1,NT-BGHcLV18-279.0,76.8ReleasedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
PRPF39Product_ID: PA5-21627
Lot_ID: UC2743613B
Source: Thermo Fisher
Target Name: PRPF39-human		 ThermoFisher_PA5-21627_UC2743613B_PRPF39.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the PRPF39 specific antibody, PA5-21627. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the PRPF39-specific antibody, PA5-21627. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
 PRPF39-K562-CRISPR-PA5-21627.png<br>Caption: Western blot following CRISPR against PRPF39 in K562 whole cell lysate using PRPF39 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against PRPF39. PRPF39 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.








RNA Targets

  • eCLIP assay for PRPF39 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRPF39 RNA is bound by 24 proteins.  







eCLIP assay for PRPF39 is not avaliable on ENCORE database.





24 proteins are bound to PRPF39 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr144557176245571901+3'-UTR,5'-UTR,CDS,intron-Proximal3.202326.32494K562UCHL5
chr144557768245577724+3'-UTR,CDS4.687847.53358HepG2BCLAF1
chr144558452845584600+3'-UTR3.427313.77473HepG2PABPN1
chr144557673845576817+3'-UTR,CDS,intron-Distal4.7328820.88881HepG2BCLAF1
chr144557896445578989+3'-UTR,CDS,intron-Proximal4.9539612.89578HepG2BCLAF1
chr144558415545584305+3'-UTR4.1053810.00858HepG2PABPN1
chr144557894345578964+3'-UTR,CDS4.2726710.24470HepG2BCLAF1
chr144557901345579103+3'-UTR,intron-Distal,intron-Proximal4.2420912.08764K562KHSRP
chr144558155645581627+3'-UTR,CDS5.1149214.17165HepG2BCLAF1
chr144558369745583718+3'-UTR,CDS3.198864.61799HepG2BCLAF1
chr144557178545571834+3'-UTR,5'-UTR,CDS3.3294810.40328HepG2BCLAF1
chr144558376745583796+3'-UTR,CDS5.159557.73487HepG2BCLAF1
chr144557188845571933+3'-UTR,5'-UTR,CDS,intron-Proximal4.162806.23016HepG2PRPF8
chr144557910745579123+3'-UTR,intron-Distal3.198864.61799HepG2BCLAF1
chr144557975645579776+3'-UTR,CDS,intron-Proximal4.111846.65960HepG2BCLAF1
chr144557173845571785+3'-UTR,5'-UTR,CDS6.1826215.35511HepG2BCLAF1
chr144558168045581700+3'-UTR,CDS4.215076.65960HepG2BCLAF1
chr144557980545579877+3'-UTR,CDS,intron-Proximal3.554084.27261HepG2GRWD1
chr144557892745578976+3'-UTR,CDS4.600894.50440HepG2PPIG
chr144557675945576811+3'-UTR,CDS,intron-Distal3.159533.00343HepG2GRWD1
chr144557895045579020+3'-UTR,CDS,intron-Proximal5.8332412.49766HepG2PRPF8
chr144556441045564438+3'-UTR,5'-UTR,intron-Proximal3.553613.55754HepG2U2AF2
chr144557174245571769+3'-UTR,5'-UTR,CDS4.151573.35169HepG2U2AF2
chr144558369045583752+3'-UTR,CDS,intron-Proximal3.344633.99908K562BUD13
chr144557669745576796+3'-UTR,CDS,intron-Distal5.263637.95724HepG2PPIG
chr144557912145579192+3'-UTR,intron-Distal3.080315.18023HepG2GRWD1
chr144557890345578943+3'-UTR,CDS4.4127212.88094HepG2BCLAF1
chr144557173345571823+3'-UTR,5'-UTR,CDS3.262996.18332HepG2GRWD1
chr144557881845578872+3'-UTR,CDS,intron-Proximal4.4358211.11870HepG2BCLAF1
chr144557185745571900+3'-UTR,5'-UTR,CDS,intron-Proximal4.007559.08790HepG2BCLAF1
chr144557668245576716+3'-UTR,CDS,intron-Distal4.791079.74753HepG2BCLAF1
chr144557933545579377+3'-UTR,CDS3.920633.20027K562ZNF622
chr144556615845566205+5'-UTR,CDS5.2419515.62471HepG2BCLAF1
chr144556588645565927+5'-UTR,intron-Distal3.533763.40321HepG2GRWD1
chr144556561345565675+5'-UTR,CDS,intron-Distal,intron-Proximal3.961414.00320K562AQR
chr144555332145553392+5'-UTR4.5124510.91141HepG2NCBP2
chr144556569545565814+5'-UTR,CDS,intron-Distal,intron-Proximal4.1841026.24229HepG2U2AF2
chr144556579545565878+5'-UTR,CDS,intron-Distal,intron-Proximal3.342574.50511HepG2U2AF1
chr144555339245553446+5'-UTR3.203066.48141HepG2NCBP2
chr144556608345566135+5'-UTR,CDS,intron-Proximal4.2308520.19081HepG2U2AF2
chr144556561345565671+5'-UTR,CDS,intron-Distal,intron-Proximal3.241754.26865K562U2AF2
chr144556608845566132+5'-UTR,CDS,intron-Proximal3.204283.40321HepG2GRWD1
chr144556560545565670+5'-UTR,CDS,intron-Distal,intron-Proximal3.9323223.90260HepG2U2AF2
chr144556608345566136+5'-UTR,CDS,intron-Proximal4.688437.38727K562U2AF2
chr144556531245565450+CDS,intron-Proximal3.8225626.80189HepG2BCLAF1
chr144558012945580157+intron-Distal3.3827811.70750K562SMNDC1
chr144558008945580175+intron-Distal,intron-Proximal4.761537.75307K562AATF
chr144557193245572027+intron-Distal,intron-Proximal4.153424.72162K562KHSRP
chr144556973445569860+intron-Distal3.944535.36899HepG2PTBP1
chr144556551345565561+intron-Distal,intron-Proximal4.7389210.18931K562GPKOW
chr144556551345565568+intron-Distal,intron-Proximal4.0577611.65416HepG2HNRNPC
chr144556556445565603+intron-Distal,intron-Proximal5.483346.63358K562EFTUD2
chr144556805545568100+intron-Distal4.111273.63454HepG2SUGP2
chr144557155945571628+intron-Distal3.959323.02234K562KHSRP
chr144556837745568443+intron-Distal3.503056.55984HepG2SUGP2
chr144556597645566044+intron-Distal,intron-Proximal3.199063.07751K562KHSRP
chr144556551145565560+intron-Distal,intron-Proximal4.2958520.17925HepG2EFTUD2
chr144556551345565558+intron-Distal,intron-Proximal4.424629.27995K562PRPF8
chr144556551345565550+intron-Distal,intron-Proximal4.708179.74794HepG2RBM22
chr144557901445579093+intron-Distal,intron-Proximal4.195048.51210HepG2KHSRP
chr144556551345565554+intron-Distal,intron-Proximal3.052477.49108HepG2BCLAF1
chr144558015145580166+intron-Distal3.5754013.54832HepG2DKC1
chr144558008845580169+intron-Distal,intron-Proximal4.841145.66889HepG2NIP7
chr144556551345565563+intron-Distal,intron-Proximal4.211236.60968K562BUD13
chr144558008945580125+intron-Distal,intron-Proximal4.5734031.24358HepG2NOLC1
chr144558013245580151+intron-Distal3.8321118.06647HepG2DKC1
chr144556964245569698+intron-Distal3.992413.86809HepG2SUGP2
chr144556551345565564+intron-Distal,intron-Proximal4.2026514.98347K562EFTUD2
chr144556556045565599+intron-Distal,intron-Proximal3.995405.42009HepG2EFTUD2
chr144556552045565613+intron-Distal,intron-Proximal4.896659.85896K562AQR
chr144558015745580173+intron-Distal3.6709211.92698K562SMNDC1
chr144556555845565611+intron-Distal,intron-Proximal4.317557.80986K562PRPF8
chr144558013045580164+intron-Distal6.1589371.36253HepG2NOLC1
chr144556624245566314+intron-Distal,intron-Proximal3.584265.14864K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRPF39 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRPF39 is not available on ENCORE database.

  • 85 RBPs can affect the levels of PRPF39.  








The Knockdown/knockout RNA-Seq assay for PRPF39 is not available on ENCORE database.





85 RBPs can affect the gene expression of PRPF39 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRPF39ENSG00000185246.13810.271401004.91160-0.310603.298802.64470HepG2ACO1
PRPF39ENSG00000185246.13622.452401008.10600-0.695605.659004.92980HepG2AKAP1
PRPF39ENSG00000185246.13834.912901009.60960-0.274102.497101.76440HepG2AKAP8L
PRPF39ENSG00000185246.13635.36100834.14560-0.392702.388801.65520HepG2ASCC1
PRPF39ENSG00000185246.131232.55240981.717000.328202.737701.96990HepG2CALR
PRPF39ENSG00000185246.131231.133501004.665200.293203.564802.82620HepG2CKAP4
PRPF39ENSG00000185246.131034.580701271.99990-0.298103.006602.34120HepG2CELF1
PRPF39ENSG00000185246.13631.61580793.08270-0.328402.587001.46850HepG2DDX1
PRPF39ENSG00000185246.131140.18950753.365600.597807.375605.89580HepG2DDX24
PRPF39ENSG00000185246.13491.42510829.47490-0.755206.419505.50850HepG2DDX6
PRPF39ENSG00000185246.13547.19120777.64970-0.507105.509204.54660HepG2DNAJC21
PRPF39ENSG00000185246.13630.13600770.84450-0.290802.745102.09620HepG2DNAJC2
PRPF39ENSG00000185246.13606.29160881.77910-0.540404.091002.99320HepG2EEF2
PRPF39ENSG00000185246.131102.27360797.507200.466803.268702.62770HepG2EIF2S1
PRPF39ENSG00000185246.131122.49230881.393700.348702.079301.52260HepG2EIF4A3
PRPF39ENSG00000185246.131678.515001349.336800.314803.868902.90840HepG2EIF4G1
PRPF39ENSG00000185246.131218.36200905.973400.427303.703102.45110HepG2ESF1
PRPF39ENSG00000185246.13717.27350981.95330-0.453104.160903.13660HepG2EWSR1
PRPF39ENSG00000185246.13475.35290639.72210-0.428403.341802.04420HepG2FAM120A
PRPF39ENSG00000185246.13903.77330578.452800.643707.329106.08720HepG2FUBP3
PRPF39ENSG00000185246.131102.13370875.602300.331902.115301.34300HepG2G3BP2
PRPF39ENSG00000185246.13792.816801097.21740-0.468803.306302.61180HepG2GPKOW
PRPF39ENSG00000185246.13794.43630959.38590-0.272202.465101.53650HepG2HDGF
PRPF39ENSG00000185246.13700.21010873.29960-0.318702.005401.40460HepG2HNRNPC
PRPF39ENSG00000185246.13972.137201245.92780-0.358005.095404.20370HepG2HNRNPL
PRPF39ENSG00000185246.13624.87770867.52430-0.473305.938905.07850HepG2HNRNPU
PRPF39ENSG00000185246.13684.60760918.59780-0.424205.642504.20170HepG2KIF1C
PRPF39ENSG00000185246.13693.44950894.43880-0.367201.977001.43900HepG2MATR3
PRPF39ENSG00000185246.13435.69020749.21050-0.782104.063702.80030HepG2METAP2
PRPF39ENSG00000185246.131229.29670915.529600.425102.955202.30220HepG2NCBP2
PRPF39ENSG00000185246.131131.902401356.25660-0.260902.255101.56670HepG2NOL12
PRPF39ENSG00000185246.13672.098101054.02650-0.649202.980802.05830HepG2PABPC1
PRPF39ENSG00000185246.131212.65500815.439200.572405.074604.10820HepG2PABPC4
PRPF39ENSG00000185246.131154.19000777.229300.570409.356008.34740HepG2PCBP1
PRPF39ENSG00000185246.131495.13910970.104200.624002.945801.87550HepG2PCBP2
PRPF39ENSG00000185246.13428.33720591.97490-0.466803.660202.24290HepG2PKM
PRPF39ENSG00000185246.131039.73910719.913200.530207.480406.28410HepG2PRPF4
PRPF39ENSG00000185246.131135.47830581.236500.9660012.8262011.26730HepG2PRPF8
PRPF39ENSG00000185246.13962.62310790.866700.283402.523201.99650HepG2PTBP1
PRPF39ENSG00000185246.13696.404901294.65490-0.8946014.7304013.50090HepG2PUF60
PRPF39ENSG00000185246.131093.040801374.32080-0.330404.987804.23870HepG2PUM1
PRPF39ENSG00000185246.13867.910701023.56360-0.238002.161101.60020HepG2PUS1
PRPF39ENSG00000185246.131289.38470856.513700.590008.331307.33520HepG2QKI
PRPF39ENSG00000185246.131437.937401192.506600.269902.339901.85310HepG2RBM22
PRPF39ENSG00000185246.131127.30770777.346700.536203.015502.31540HepG2RBM25
PRPF39ENSG00000185246.131074.70010880.153100.288002.622802.09360HepG2NELFE
PRPF39ENSG00000185246.131224.85740819.753200.579309.473508.43520HepG2RECQL
PRPF39ENSG00000185246.13523.65640696.51550-0.411503.004502.36740HepG2RPS19
PRPF39ENSG00000185246.13881.54830574.978600.616405.057604.02850HepG2RRP9
PRPF39ENSG00000185246.132054.542301389.764300.563904.115003.28430HepG2SF3A3
PRPF39ENSG00000185246.131092.64370823.382100.408104.775804.03130HepG2SF3B4
PRPF39ENSG00000185246.13767.00450900.91130-0.232202.083001.51310HepG2SMN1
PRPF39ENSG00000185246.131623.390401346.878800.269303.237702.70930HepG2SRFBP1
PRPF39ENSG00000185246.131097.52820859.437700.352703.828503.29500HepG2SRSF1
PRPF39ENSG00000185246.131064.364801278.26810-0.264202.684202.06490HepG2SRSF5
PRPF39ENSG00000185246.131821.157101169.386200.6390015.3590014.34940HepG2SSB
PRPF39ENSG00000185246.131125.780701453.75590-0.368905.474104.65350HepG2SUCLG1
PRPF39ENSG00000185246.131104.37070772.509900.515506.525605.72770HepG2TAF15
PRPF39ENSG00000185246.13909.34220709.816700.357302.726101.89560HepG2TIA1
PRPF39ENSG00000185246.13671.32330850.50240-0.341303.278902.67690HepG2TRIM56
PRPF39ENSG00000185246.131520.14350903.398100.750709.510008.33090HepG2U2AF1
PRPF39ENSG00000185246.13759.77680443.023100.778108.163606.86250HepG2UCHL5
PRPF39ENSG00000185246.13958.790901232.50130-0.362302.669101.98060HepG2UPF1
PRPF39ENSG00000185246.131043.86370686.803100.603903.598002.44140HepG2UPF2
PRPF39ENSG00000185246.13963.44120738.198100.384102.734902.01340HepG2XRN2
PRPF39ENSG00000185246.13950.93850710.478100.420505.361804.47620HepG2ZC3H8
PRPF39ENSG00000185246.131352.754701010.108200.421305.699204.93090K562AGGF1
PRPF39ENSG00000185246.131305.102901051.052000.312202.283101.68830K562AKAP8L
PRPF39ENSG00000185246.131053.008901348.50280-0.356803.841302.53070K562CPEB4
PRPF39ENSG00000185246.131338.262001131.078500.242602.082401.33350K562DKC1
PRPF39ENSG00000185246.131677.976101095.033600.615602.582001.41550K562HNRNPA2B1
PRPF39ENSG00000185246.13737.67860986.25600-0.419002.532401.56550K562IGF2BP2
PRPF39ENSG00000185246.13698.052001003.31670-0.523404.383202.80800K562IGF2BP3
PRPF39ENSG00000185246.131736.831601115.468700.638703.028602.16220K562KIF1C
PRPF39ENSG00000185246.13809.596201034.87090-0.354202.935401.98160K562MATR3
PRPF39ENSG00000185246.131773.009501249.601100.504605.821704.41470K562MBNL1
PRPF39ENSG00000185246.13680.01430875.12620-0.363902.696501.83420K562METAP2
PRPF39ENSG00000185246.131492.90360875.876400.769203.173002.21610K562NAA15
PRPF39ENSG00000185246.131230.12870922.669300.414803.633502.51540K562PCBP2
PRPF39ENSG00000185246.13786.472901065.64700-0.438303.599502.64450K562PPIG
PRPF39ENSG00000185246.13902.41350555.046500.701107.085905.88750K562PRPF8
PRPF39ENSG00000185246.13663.063901007.39710-0.603407.420206.36920K562PTBP1
PRPF39ENSG00000185246.132487.043201042.436601.2544017.9568016.60940K562PUS1
PRPF39ENSG00000185246.131639.001101015.629900.6903012.6791011.41060K562RBM15
PRPF39ENSG00000185246.13756.74010966.19080-0.352502.539301.73770K562RBM22
PRPF39ENSG00000185246.13704.49190941.68540-0.418702.995101.52930K562RBM34
PRPF39ENSG00000185246.131949.674601178.379300.726303.018201.39600K562RBM39
PRPF39ENSG00000185246.13745.496701016.71050-0.447603.324002.11340K562NELFE
PRPF39ENSG00000185246.131907.748601005.984100.923204.866003.09270K562SNRNP200
PRPF39ENSG00000185246.13724.52120987.54040-0.446804.113203.25790K562SRSF1
PRPF39ENSG00000185246.13708.02180932.54700-0.397403.006001.90320K562SRSF5
PRPF39ENSG00000185246.13795.96780531.052200.583806.289605.04600K562SYNCRIP
PRPF39ENSG00000185246.13653.34160999.55150-0.613406.076104.99700K562TARDBP
PRPF39ENSG00000185246.13337.57290489.91890-0.537303.093701.31820K562TFIP11
PRPF39ENSG00000185246.13663.50600964.15500-0.539205.773404.52530K562TIA1
PRPF39ENSG00000185246.13739.49100945.89510-0.355102.596101.54250K562TRA2A
PRPF39ENSG00000185246.131549.39390501.830101.6263032.3326028.25640K562TRNAU1AP
PRPF39ENSG00000185246.131324.77640807.620200.713907.236005.30870K562U2AF1
PRPF39ENSG00000185246.131257.03080834.093500.591608.138606.74690K562U2AF2
PRPF39ENSG00000185246.13918.959401075.28080-0.226601.981001.36610K562UPF1
PRPF39ENSG00000185246.131223.065001555.41350-0.346802.939102.04620K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRPF39 is not available on ENCORE database.





18 RBPs can affect the splicing of PRPF39 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPRPF39ENSG00000185246.13chr14+455790964557919645578818455789834557929645579379-0.207000.000410.01008excludedK562SF3B4
SEPRPF39ENSG00000185246.13chr14+455790964557919645578818455789834557929645579423-0.253000.000200.01062excludedK562PRPF8
SEPRPF39ENSG00000185246.13chr14+455656264556596145565305455654314556608945566208-0.348000.000000.00000excludedHepG2U2AF1
SEPRPF39ENSG00000185246.13chr14+455790964557919645578818455789834557929645579379-0.221000.000010.00052excludedHepG2U2AF1
SEPRPF39ENSG00000185246.13chr14+455790964557919645578818455789834557929645579379-0.308000.000300.06642excludedHepG2DKC1
SEPRPF39ENSG00000185246.13chr14+4556916945569336455660894556620845571731455718990.061000.000030.00066includedHepG2U2AF2
SEPRPF39ENSG00000185246.13chr14+455776174557772545576653455768194557881845578983-0.067000.000000.00005excludedHepG2U2AF2
SEPRPF39ENSG00000185246.13chr14+455657984556596145565400455654314556608945566208-0.339000.000000.00000excludedHepG2U2AF2
SEPRPF39ENSG00000185246.13chr14+455790964557919645578818455789834557929645579423-0.164000.004960.05279excludedHepG2U2AF2
SEPRPF39ENSG00000185246.13chr14+455815204558170545578818455789834558338545583460-0.101000.006150.05515excludedK562AQR
SEPRPF39ENSG00000185246.13chr14+455790964557919645578818455789834557929645579423-0.206000.000560.02452excludedK562FXR1
SEPRPF39ENSG00000185246.13chr14+455790964557919645578818455789834557929645579423-0.345000.000010.00203excludedHepG2NCBP2
SEPRPF39ENSG00000185246.13chr14+4556790445568024455660894556620845571731455718990.180000.000020.00172includedHepG2MATR3
SEPRPF39ENSG00000185246.13chr14+455790964557919645578818455789834557929645579423-0.358000.000000.00176excludedHepG2XPO5
SEPRPF39ENSG00000185246.13chr14+455656264556596145565305455654314556608945566208-0.270000.000000.00021excludedHepG2SF3A3
SEPRPF39ENSG00000185246.13chr14+455656264556596145565305455654314556608945566208-0.135000.001580.05735excludedK562SF3B1
A3SSPRPF39ENSG00000185246.13chr14+4556607045566208455660894556620845565305455654310.148000.002470.01553longerK562AQR
A3SSPRPF39ENSG00000185246.13chr14+4558149045581705455815204558170545579751455800200.111000.000000.00000longerK562AQR
A3SSPRPF39ENSG00000185246.13chr14+4558336045583460455833854558346045581520455817050.111000.000000.00001longerK562AQR
A3SSPRPF39ENSG00000185246.13chr14+4558364745583817455836964558381745583385455834600.088000.000000.00000longerK562AQR
RIPRPF39ENSG00000185246.13chr14+4556530545566208455653054556543145566089455662080.203000.000590.00463includedK562PUS1
RIPRPF39ENSG00000185246.13chr14+455653054556620845565305455654314556608945566208-0.310000.000000.00001excludedHepG2SF3A3
RIPRPF39ENSG00000185246.13chr14+455653054556620845565305455654314556608945566208-0.097000.000110.00645excludedK562SF3B1
RIPRPF39ENSG00000185246.13chr14+455653054556620845565305455654314556608945566208-0.283000.000000.00000excludedHepG2U2AF2
RIPRPF39ENSG00000185246.13chr14+455653054556620845565305455654314556608945566208-0.264000.000890.01332excludedK562PRPF8
RIPRPF39ENSG00000185246.13chr14+4556530545566208455653054556543145566089455662080.196000.001910.04269includedHepG2FTO
RIPRPF39ENSG00000185246.13chr14+4556530545566208455653054556543145566089455662080.145000.001480.09689includedK562MTPAP
RIPRPF39ENSG00000185246.13chr14+4556530545566208455653054556543145566089455662080.177000.000150.01508includedK562WDR3
RIPRPF39ENSG00000185246.13chr14+455653054556620845565305455654314556608945566208-0.355000.000000.00000excludedHepG2U2AF1
RIPRPF39ENSG00000185246.13chr14+455653054556620845565305455654314556608945566208-0.343000.000050.00961excludedK562SERBP1
RIPRPF39ENSG00000185246.13chr14+455653054556620845565305455654314556608945566208-0.326000.000520.01127excludedK562FXR1
MXEPRPF39ENSG00000185246.13chr14+4557173145571899455766534557681945566089455662084557761745577725-0.173000.000920.038162includedK562LIN28B
MXEPRPF39ENSG00000185246.13chr14+45579751455800204558152045581705455792964557942345583385455834600.121000.009450.060481includedK562AQR
MXEPRPF39ENSG00000185246.13chr14+45579751455800204558152045581705455788184557898345583385455834600.054000.007000.047451includedK562AQR
MXEPRPF39ENSG00000185246.13chr14+45579751455798314558152045581705455792964557942345583385455834600.121000.017640.099491includedK562AQR
MXEPRPF39ENSG00000185246.13chr14+45576653455768194557761745577725455717314557189945578818455789830.097000.000170.001781includedHepG2U2AF2
MXEPRPF39ENSG00000185246.13chr14+4557909645579196455792964557942345578818455789834557975145580020-0.082000.008760.099562includedK562SF3B4
MXEPRPF39ENSG00000185246.13chr14+4557173145571899455766534557681945566089455662084557761745577725-0.212000.000500.013812includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRPF39 is not avaliable on ENCORE database.