MSN

General Information

Gene Name : MSN
Gene ID : ENSG00000147065.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: MSN)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	MSN	ENSG00000147065.16	282.34	294.24	288.29	ENCSR000AEF
HepG2	MSN	ENSG00000147065.16	0.04	0.02	0.03	ENCSR985KAT
K562	MSN	ENSG00000147065.16	324.82	326.87	325.85	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for MSN is not avaliable on ENCORE database.

Proteins bound to RNA

MSN RNA is bound by 34 proteins.

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eCLIP assay for MSN is not avaliable on ENCORE database.

34 proteins are bound to MSN RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	64960703	64960810	+	3'-UTR	3.95894	80.74441	K562	UPF1
chrX	64936690	64936715	+	3'-UTR,CDS	4.86555	73.25980	K562	YBX3
chrX	64961722	64961751	+	3'-UTR	6.13372	59.90535	HepG2	SUB1
chrX	64956709	64956756	+	CDS	5.92471	57.95813	K562	UCHL5
chrX	64936715	64936729	+	CDS	4.72354	57.22979	K562	YBX3
chrX	64957084	64957133	+	CDS	5.06810	57.14335	K562	UCHL5
chrX	64961751	64961772	+	3'-UTR	7.41434	50.57193	HepG2	SUB1
chrX	64956662	64956766	+	CDS	3.01654	49.69786	K562	ZNF800
chrX	64960622	64960703	+	3'-UTR	3.36005	49.11646	K562	UPF1
chrX	64960425	64960558	+	3'-UTR	3.74326	49.10357	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 166 entries

eCLIP assay for MSN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for MSN is not available on ENCORE database.
104 RBPs can affect the levels of MSN.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for MSN is not available on ENCORE database.

104 RBPs can affect the gene expression of MSN :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
MSN	ENSG00000147065.12	15285.99480	27251.93990	-0.83410	44.98950	42.67330	K562	DDX47
MSN	ENSG00000147065.12	9863.19830	19623.19510	-0.99240	44.15060	41.05680	K562	HNRNPU
MSN	ENSG00000147065.12	14072.21140	21894.91040	-0.63770	31.49370	29.26720	K562	MTPAP
MSN	ENSG00000147065.12	18051.38010	24326.94030	-0.43040	27.96390	25.99210	K562	NSUN2
MSN	ENSG00000147065.12	15532.26540	22951.94810	-0.56330	27.09040	24.88830	K562	WDR43
MSN	ENSG00000147065.12	112.04670	4.34430	4.68870	25.62520	24.28270	HepG2	PTBP1
MSN	ENSG00000147065.12	18428.92410	29257.81100	-0.66680	24.95420	22.40200	K562	EIF4G2
MSN	ENSG00000147065.12	11660.75920	18810.75860	-0.68990	18.22660	16.27630	K562	POLR2G
MSN	ENSG00000147065.12	12487.29030	21628.75230	-0.79250	17.32880	16.02390	K562	AQR
MSN	ENSG00000147065.12	18767.92170	25794.39210	-0.45880	16.89940	15.29110	K562	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 118 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for MSN is not available on ENCORE database.

5 RBPs can affect the splicing of MSN :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	MSN	ENSG00000147065.12	chrX	+	64936679	64936763	64947675	64947771	64887536	64887720	64949299	64949574	0.11100	0.00010	0.00812	1included	K562	TIA1
MXE	MSN	ENSG00000147065.12	chrX	+	64936679	64936763	64947675	64947771	64887536	64887720	64949299	64949574	0.10700	0.00015	0.00927	1included	K562	SBDS
MXE	MSN	ENSG00000147065.12	chrX	+	64936679	64936763	64947675	64947771	64887536	64887720	64949299	64949574	0.08900	0.00122	0.02322	1included	K562	SF3B4
MXE	MSN	ENSG00000147065.12	chrX	+	64936679	64936763	64947675	64947771	64887536	64887720	64949299	64949574	0.11000	0.00378	0.08459	1included	K562	XRN2
MXE	MSN	ENSG00000147065.12	chrX	+	64936679	64936763	64947675	64947771	64887536	64887720	64949299	64949574	0.13800	0.00763	0.08097	1included	K562	HNRNPUL1

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

MSN

General Information

Functions

Localization

Domains (AlphaFold: MSN)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for MSN is not avaliable on ENCORE database.

34 proteins are bound to MSN RNA:

eCLIP assay for MSN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for MSN is not available on ENCORE database.

104 RBPs can affect the gene expression of MSN :

The Knockdown/knockout RNA-Seq assay for MSN is not available on ENCORE database.

5 RBPs can affect the splicing of MSN :

The Knockdown/knockout RNA-Seq assay for MSN is not avaliable on ENCORE database.