LTV1

General Information

Gene Name       : LTV1
Gene ID             : ENSG00000135521.8
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: LTV1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LTV1ENSG00000135521.843.6443.1543.39ENCSR000AEF
HepG2LTV1ENSG00000135521.852.5882.7667.67ENCSR985KAT
K562LTV1ENSG00000135521.882.2182.5882.39ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LTV1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LTV1 RNA is bound by 18 proteins.  







eCLIP assay for LTV1 is not avaliable on ENCORE database.





18 proteins are bound to LTV1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6144184613144184663+3'-UTR,CDS6.1780716.75583HepG2BCLAF1
chr6144184801144184856+3'-UTR5.225128.78414K562PUM2
chr6144184638144184697+3'-UTR,CDS3.9208511.18809K562UCHL5
chr6144184657144184708+3'-UTR,CDS3.516885.07480K562PUM1
chr6144164494144164621+5'-UTR,CDS,intron-Distal,intron-Proximal4.383985.64460HepG2GRWD1
chr6144164500144164621+5'-UTR,CDS,intron-Distal,intron-Proximal3.323938.15127K562ZNF622
chr6144164511144164621+5'-UTR,CDS,intron-Distal,intron-Proximal4.8056816.40314K562DDX3X
chr6144164592144164711+5'-UTR,CDS,intron-Distal,intron-Proximal4.646258.11807HepG2PRPF8
chr6144167291144167341+CDS3.168134.58091HepG2GRWD1
chr6144178931144178989+CDS4.8651321.44620K562UCHL5
chr6144167297144167326+CDS3.013065.17653K562UCHL5
chr6144178916144179010+CDS4.084513.21664HepG2UCHL5
chr6144167248144167268+CDS3.365135.41277K562UCHL5
chr6144165654144165745+3'-UTR,CDS3.854926.39282HepG2GRWD1
chr6144178900144179009+CDS3.523097.07202HepG2GRWD1
chr6144178495144178564+CDS3.884627.67656HepG2GRWD1
chr6144184594144184634+CDS3.744813.22063K562TRA2A
chr6144183323144183365+CDS5.9130112.56307HepG2BCLAF1
chr6144167248144167266+CDS4.168016.81238K562ZNF622
chr6144165669144165740+3'-UTR,CDS3.000995.60276HepG2BCLAF1
chr6144183323144183345+CDS5.494297.69727K562UCHL5
chr6144184551144184594+CDS,intron-Proximal4.299913.75533K562TRA2A
chr6144183286144183297+CDS3.613905.15500HepG2BCLAF1
chr6144171329144171365+CDS,intron-Proximal5.763314.02817HepG2PRPF8
chr6144183304144183338+CDS3.416005.03432K562GRWD1
chr6144178906144178940+CDS3.748688.16183HepG2BCLAF1
chr6144165628144165743+3'-UTR,CDS3.8193010.57812K562UCHL5
chr6144184607144184631+CDS3.381555.71803K562UCHL5
chr6144167228144167283+CDS3.991317.03584HepG2GRWD1
chr6144184385144184424+CDS,intron-Proximal3.977653.22063K562TRA2A
chr6144179141144179184+CDS,intron-Proximal5.066475.01842HepG2PRPF8
chr6144178898144178969+CDS3.535473.24162HepG2G3BP1
chr6144178940144178994+CDS4.1459616.85893HepG2BCLAF1
chr6144178891144178994+CDS4.2868819.23691K562GRWD1
chr6144178899144178985+CDS4.5254317.56831K562ZNF622
chr6144178860144178958+CDS,intron-Proximal3.045705.40388HepG2U2AF2
chr6144167327144167394+CDS,intron-Proximal3.560166.60804HepG2PRPF8
chr6144167251144167259+CDS3.514445.45876HepG2BCLAF1
chr6144178256144178319+intron-Distal4.653416.08869K562EXOSC5
chr6144178231144178339+intron-Distal4.238154.03915HepG2SUGP2
chr6144176421144176488+intron-Distal4.631695.97584HepG2MATR3
chr6144179198144179246+intron-Distal,intron-Proximal3.961414.00320K562AQR
chr6144176062144176111+intron-Distal4.7995012.87307K562EXOSC5
chr6144176434144176499+intron-Distal5.275058.69493K562EXOSC5
chr6144174137144174184+intron-Distal3.348554.02190K562EXOSC5
chr6144178636144178738+intron-Distal,intron-Proximal4.410715.02888K562KHSRP
chr6144175568144175638+intron-Distal3.674444.10380HepG2MATR3
chr6144175189144175268+intron-Distal4.482535.83842HepG2SUGP2
chr6144174889144174917+intron-Distal4.534544.80399K562EXOSC5
chr6144178773144178868+intron-Distal,intron-Proximal3.525554.76825K562KHSRP
chr6144166936144167066+intron-Distal3.270074.35650K562KHSRP
chr6144176062144176139+intron-Distal4.052383.34098HepG2HNRNPM
chr6144175570144175642+intron-Distal5.238199.35180K562EXOSC5
chr6144175197144175259+intron-Distal4.551463.78432HepG2MATR3
chr6144175197144175261+intron-Distal5.322179.74359K562HNRNPM
chr6144176665144176709+intron-Distal3.761063.04224HepG2SUGP2
chr6144175203144175266+intron-Distal5.1924114.16920K562EXOSC5
chr6144176059144176142+intron-Distal5.3383810.00762K562HNRNPM
chr6144170922144170976+intron-Distal3.467644.81962HepG2TIA1
chr6144181363144181489+intron-Distal,intron-Proximal3.473064.35650K562KHSRP
chr6144174491144174564+intron-Distal5.3053219.40963K562EXOSC5
chr6144175840144175913+intron-Distal5.4095510.34146K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LTV1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LTV1 is not available on ENCORE database.

  • 131 RBPs can affect the levels of LTV1.  








The Knockdown/knockout RNA-Seq assay for LTV1 is not available on ENCORE database.





131 RBPs can affect the gene expression of LTV1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LTV1ENSG00000135521.8454.38800653.93590-0.525203.863202.70850HepG2ADAR
LTV1ENSG00000135521.82431.77090752.220101.6927035.2577033.63960HepG2AKAP1
LTV1ENSG00000135521.81072.10820853.733400.328503.074102.27090HepG2AKAP8L
LTV1ENSG00000135521.81253.62530622.434401.0100014.1652012.51550HepG2ASCC1
LTV1ENSG00000135521.8889.788401739.74940-0.9673017.2881015.97730HepG2BOP1
LTV1ENSG00000135521.8794.650401694.01230-1.092104.034102.84410HepG2CCAR1
LTV1ENSG00000135521.81210.95960591.344101.0340015.0408013.40690HepG2CIRBP
LTV1ENSG00000135521.81268.14040849.565500.5778011.6286010.45490HepG2CKAP4
LTV1ENSG00000135521.81199.624601597.18740-0.413003.615302.84000HepG2CPSF6
LTV1ENSG00000135521.8844.58560670.609800.332702.755701.73980HepG2YBX3
LTV1ENSG00000135521.81136.73070785.872600.532409.569908.19920HepG2DDX19B
LTV1ENSG00000135521.8842.58170671.532300.327302.629601.50230HepG2DDX1
LTV1ENSG00000135521.81511.81450973.797900.634506.235204.38770HepG2DDX27
LTV1ENSG00000135521.81174.01620788.561800.574105.150203.30880HepG2DDX28
LTV1ENSG00000135521.81908.28600720.646101.4048024.5375022.86460HepG2DDX3X
LTV1ENSG00000135521.81110.42890812.943900.449805.834504.91680HepG2DKC1
LTV1ENSG00000135521.8505.59870658.46990-0.381103.131502.38790HepG2DNAJC21
LTV1ENSG00000135521.81061.95860835.354400.346202.255001.42100HepG2EEF2
LTV1ENSG00000135521.81053.40670696.450100.596905.726504.12770HepG2EFTUD2
LTV1ENSG00000135521.81293.65850931.861000.473202.651701.51070HepG2EIF2S2
LTV1ENSG00000135521.81123.27770678.156200.727908.002406.53960HepG2EIF3D
LTV1ENSG00000135521.81119.57760716.772500.643308.231906.55920HepG2EIF3G
LTV1ENSG00000135521.81172.22790657.756200.833508.837007.69920HepG2EIF4A3
LTV1ENSG00000135521.81138.57440640.253700.830406.970405.90780HepG2EIF4B
LTV1ENSG00000135521.81859.122401349.356900.462207.862006.58480HepG2EIF4G1
LTV1ENSG00000135521.82438.285401961.047500.314104.568003.83050HepG2ETF1
LTV1ENSG00000135521.81197.46390830.353000.528102.205101.45980HepG2EWSR1
LTV1ENSG00000135521.8850.50550432.331400.9761012.4456010.83780HepG2FUBP3
LTV1ENSG00000135521.81116.55820663.388000.751008.061306.92740HepG2FXR1
LTV1ENSG00000135521.81239.85570653.281400.9243012.3696010.49020HepG2G3BP2
LTV1ENSG00000135521.81125.903601752.32860-0.6382013.5130012.08650HepG2HNRNPF
LTV1ENSG00000135521.81203.43700622.956700.9499013.6794012.24310HepG2HNRNPK
LTV1ENSG00000135521.8674.185801245.93110-0.8860023.7318021.95950HepG2HNRNPL
LTV1ENSG00000135521.81160.369101727.83430-0.574405.982605.09430HepG2HNRNPLL
LTV1ENSG00000135521.81197.88730855.849600.485003.076802.07620HepG2HNRNPM
LTV1ENSG00000135521.8998.741001725.55460-0.788906.557405.48520HepG2IGF2BP1
LTV1ENSG00000135521.8942.57350625.718100.591005.163804.26720HepG2IGF2BP2
LTV1ENSG00000135521.8970.19380750.330000.370604.553303.63160HepG2ILF2
LTV1ENSG00000135521.81069.41310629.274400.765006.488104.88390HepG2KHSRP
LTV1ENSG00000135521.81170.87700792.911900.562306.194104.51910HepG2LARP7
LTV1ENSG00000135521.81168.53740795.580500.554505.278002.99350HepG2LSM11
LTV1ENSG00000135521.81319.01770663.618400.9909010.728509.46260HepG2MAGOH
LTV1ENSG00000135521.8945.77960671.550700.493904.114102.18710HepG2MARK2
LTV1ENSG00000135521.82063.94330667.375001.6287017.1128015.64840HepG2MATR3
LTV1ENSG00000135521.81237.165201762.15090-0.510303.154302.11330HepG2MTPAP
LTV1ENSG00000135521.81785.51460683.129801.3860025.8346024.03850HepG2NCBP2
LTV1ENSG00000135521.8800.87340507.019400.659403.083201.39760HepG2PA2G4
LTV1ENSG00000135521.81213.18030608.529900.9953013.3603011.80180HepG2PABPC4
LTV1ENSG00000135521.81078.69180727.080100.569008.721407.35510HepG2PARN
LTV1ENSG00000135521.81320.54130604.906701.1262033.1024031.40730HepG2PCBP1
LTV1ENSG00000135521.81144.64260615.532300.8949017.4205016.27530HepG2PTBP1
LTV1ENSG00000135521.81006.242701294.66730-0.363603.133402.50540HepG2PUF60
LTV1ENSG00000135521.82115.608601374.338500.6222018.0846016.83800HepG2PUM1
LTV1ENSG00000135521.81114.90180666.600200.7419011.5580010.41130HepG2QKI
LTV1ENSG00000135521.81810.64900784.257001.2070011.185609.83680HepG2RAVER1
LTV1ENSG00000135521.82290.903301639.050900.483004.028203.43340HepG2RBM22
LTV1ENSG00000135521.8996.48740604.996300.719809.333208.15070HepG2RBM25
LTV1ENSG00000135521.81486.72820956.105500.636807.286005.66590HepG2RBM27
LTV1ENSG00000135521.81000.76540776.398200.366102.481601.47860HepG2RCC2
LTV1ENSG00000135521.81428.67630685.014101.0604028.5304027.16880HepG2NELFE
LTV1ENSG00000135521.81188.04790638.023400.8968019.8979018.50140HepG2RECQL
LTV1ENSG00000135521.81124.00370808.338200.475503.889701.45800HepG2RPL23A
LTV1ENSG00000135521.81287.339301887.51970-0.552106.446705.46680HepG2RPLP0
LTV1ENSG00000135521.81061.79590770.270200.463002.362601.48820HepG2RPS10
LTV1ENSG00000135521.81123.55200659.844700.7678010.913609.79010HepG2RPS19
LTV1ENSG00000135521.81185.30500881.813400.426603.553402.64880HepG2RPS2
LTV1ENSG00000135521.81428.59770900.106900.666307.983306.16150HepG2RPS5
LTV1ENSG00000135521.81167.45100794.506000.555105.136904.09920HepG2RRP9
LTV1ENSG00000135521.81305.90780853.082800.614203.840202.02700HepG2RTF1
LTV1ENSG00000135521.8860.49590654.155300.395404.537703.74590HepG2SAFB2
LTV1ENSG00000135521.81004.04410672.645700.577804.127702.54070HepG2SART3
LTV1ENSG00000135521.8997.79920662.306300.591205.716504.37700HepG2SERBP1
LTV1ENSG00000135521.82227.429601242.204200.842408.789107.53240HepG2SF3A3
LTV1ENSG00000135521.81357.87550640.817901.0833029.6124028.04060HepG2SF3B4
LTV1ENSG00000135521.8991.269901933.94020-0.964202.770901.32690HepG2SFPQ
LTV1ENSG00000135521.81264.90960762.846600.7295017.8371016.41900HepG2SMN1
LTV1ENSG00000135521.81913.37150668.887701.5162066.6681065.05010HepG2SRSF1
LTV1ENSG00000135521.81713.525201278.285700.422706.671305.75670HepG2SRSF5
LTV1ENSG00000135521.81119.393701721.56630-0.6210011.7733010.50720HepG2SRSF7
LTV1ENSG00000135521.8735.12960544.186500.433804.770804.08340HepG2SRSF9
LTV1ENSG00000135521.81218.42800816.367400.577604.816703.17570HepG2SSRP1
LTV1ENSG00000135521.8956.39960621.227200.622404.582703.13060HepG2STIP1
LTV1ENSG00000135521.81991.200401453.771300.453709.260808.23690HepG2SUCLG1
LTV1ENSG00000135521.81208.52140826.717800.547703.802302.22770HepG2SUGP2
LTV1ENSG00000135521.81533.67990601.257101.3508042.5773040.71810HepG2TAF15
LTV1ENSG00000135521.81212.514901684.08460-0.474004.616403.71200HepG2TARDBP
LTV1ENSG00000135521.8870.66080694.444800.326202.269701.35920HepG2TFIP11
LTV1ENSG00000135521.8820.00220552.436400.569706.134804.89630HepG2TIA1
LTV1ENSG00000135521.8886.95110713.731100.313402.395301.92410HepG2TIAL1
LTV1ENSG00000135521.81565.502201264.822000.307602.554101.71780HepG2TUFM
LTV1ENSG00000135521.81625.005101060.970700.615004.756503.94570HepG2U2AF1
LTV1ENSG00000135521.8834.84230612.060400.447703.455402.61110HepG2UCHL5
LTV1ENSG00000135521.81317.381201101.643100.257902.764502.06480HepG2UPF1
LTV1ENSG00000135521.81479.325901063.596300.475907.640206.72570HepG2UTP3
LTV1ENSG00000135521.81522.201501211.599500.329105.138004.45040HepG2ZNF622
LTV1ENSG00000135521.81221.55340783.433000.640704.805603.04900HepG2ZRANB2
LTV1ENSG00000135521.81647.488201165.873300.498805.782104.00760K562AARS
LTV1ENSG00000135521.8793.593001015.57110-0.355802.481501.93870K562AGGF1
LTV1ENSG00000135521.83611.966602758.534800.388801.948801.44030K562AQR
LTV1ENSG00000135521.81035.676201482.99960-0.517902.944501.95630K562BCLAF1
LTV1ENSG00000135521.81072.645702071.93030-0.9498015.8985013.77130K562BOP1
LTV1ENSG00000135521.8431.82570590.52630-0.451602.797201.73630K562CCAR1
LTV1ENSG00000135521.82131.903203243.68990-0.605502.505601.50440K562CNOT7
LTV1ENSG00000135521.81183.837302203.04800-0.8960019.9514017.83290K562CPSF6
LTV1ENSG00000135521.81538.352801814.80890-0.238402.639301.46000K562DDX21
LTV1ENSG00000135521.8543.03070684.59140-0.334202.273001.33490K562DDX3X
LTV1ENSG00000135521.86098.845802783.834601.1314041.7286039.48740K562DDX47
LTV1ENSG00000135521.81557.631201137.318700.453605.157103.90850K562DKC1
LTV1ENSG00000135521.8598.16390751.90740-0.330002.914801.66720K562EIF2S1
LTV1ENSG00000135521.82263.049402741.42220-0.276703.389202.60590K562EIF2S2
LTV1ENSG00000135521.81368.35110600.675001.187703.494802.35170K562EIF3A
LTV1ENSG00000135521.82780.220001313.255501.0820010.871509.28490K562EIF3G
LTV1ENSG00000135521.8889.531901131.72170-0.347402.978901.66410K562EXOSC5
LTV1ENSG00000135521.81740.609802241.56520-0.364903.230202.30040K562FMR1
LTV1ENSG00000135521.8833.769801161.04620-0.477704.972603.11810K562FUS
LTV1ENSG00000135521.82398.17210743.782301.6889074.2809071.49000K562FXR1
LTV1ENSG00000135521.8761.488601033.25440-0.440304.030502.27160K562G3BP1
LTV1ENSG00000135521.81290.72070788.297400.711306.072304.93820K562G3BP2
LTV1ENSG00000135521.81554.434102103.36210-0.436303.625802.72140K562GPKOW
LTV1ENSG00000135521.82371.334903653.44600-0.6236010.607109.09940K562GRSF1
LTV1ENSG00000135521.81103.515701512.26850-0.454605.181403.72610K562HNRNPA1
LTV1ENSG00000135521.8727.964901276.34420-0.810105.513104.69930K562HNRNPC
LTV1ENSG00000135521.81823.137701079.336700.756209.643407.28790K562HNRNPK
LTV1ENSG00000135521.81981.294502515.67260-0.344503.554202.33640K562HNRNPL
LTV1ENSG00000135521.8750.227001080.92110-0.526903.764602.49790K562IGF2BP2
LTV1ENSG00000135521.8475.902101099.36350-1.2079023.0587019.68750K562IGF2BP3
LTV1ENSG00000135521.81352.601501796.02630-0.409102.433001.56400K562KRR1
LTV1ENSG00000135521.81546.742101135.808500.445404.908403.78170K562MAGOH
LTV1ENSG00000135521.81418.166101133.474300.323202.776101.85080K562MATR3
LTV1ENSG00000135521.81452.544302053.11890-0.499206.096004.77010K562METAP2
LTV1ENSG00000135521.81308.501301952.23990-0.577203.280402.40310K562MTPAP
LTV1ENSG00000135521.81488.181502169.37280-0.543703.825702.96410K562NSUN2
LTV1ENSG00000135521.81508.426301010.552300.577806.824605.26790K562PCBP2
LTV1ENSG00000135521.8888.293301439.54550-0.696507.437906.07440K562PCBP3
LTV1ENSG00000135521.81234.611001657.11790-0.424603.304201.58320K562PKM
LTV1ENSG00000135521.8839.814901104.18070-0.394803.636302.71190K562POLR2G
LTV1ENSG00000135521.82665.572401210.419001.1388024.6849022.45090K562PRPF8
LTV1ENSG00000135521.8775.396701144.29730-0.561503.287602.28970K562PSIP1
LTV1ENSG00000135521.81877.112501103.523800.7663014.2757012.83000K562PTBP1
LTV1ENSG00000135521.85465.992703886.995600.491707.217705.43070K562PUM1
LTV1ENSG00000135521.8747.109501043.64230-0.482202.451001.52200K562RCC2
LTV1ENSG00000135521.81581.408601113.442900.506104.916303.41060K562NELFE
LTV1ENSG00000135521.82307.643301233.207200.9039011.698409.99420K562RPS19
LTV1ENSG00000135521.8967.42930606.003000.674703.630502.46560K562RPS3
LTV1ENSG00000135521.81454.01710983.850800.563406.890705.19590K562SAFB
LTV1ENSG00000135521.81031.55170820.471300.330202.211701.44870K562SF3B4
LTV1ENSG00000135521.8635.34180989.38450-0.639002.239301.33810K562SRFBP1
LTV1ENSG00000135521.8763.980201021.77430-0.419503.399502.21430K562SRSF5
LTV1ENSG00000135521.81308.072401619.63370-0.308203.725702.35900K562SRSF7
LTV1ENSG00000135521.82399.306601107.521701.1152031.8563029.40240K562SYNCRIP
LTV1ENSG00000135521.8624.691101100.66880-0.817204.577103.34940K562TIAL1
LTV1ENSG00000135521.8651.896901168.89340-0.842405.203303.80570K562TRIM56
LTV1ENSG00000135521.81931.448902499.04590-0.371702.828801.54490K562TROVE2
LTV1ENSG00000135521.8850.849401240.62040-0.544102.366801.43270K562UCHL5
LTV1ENSG00000135521.81433.299502300.21150-0.682404.935704.00640K562UPF1
LTV1ENSG00000135521.81209.675101968.25170-0.702303.773502.74950K562WDR3
LTV1ENSG00000135521.82818.470302046.523600.461604.894303.79770K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LTV1 is not available on ENCORE database.





2 RBPs can affect the splicing of LTV1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELTV1ENSG00000135521.8chr6+144181502144181690144178888144179144144183240144183346-0.056000.001780.01983excludedK562AQR
A3SSLTV1ENSG00000135521.8chr6+1441831921441833461441832401441833461441815621441816900.093000.000000.00000longerK562AQR
A5SSLTV1ENSG00000135521.8chr6+1441644801441646821441644801441646171441656221441657540.068000.000020.02039longerHepG2SSB
MXELTV1ENSG00000135521.8chr6+1441831921441833461441838691441840331441815621441816901441842221441844230.053000.000000.000001includedK562AQR
MXELTV1ENSG00000135521.8chr6+1441831921441833801441838691441840331441815621441816901441842221441844230.114000.000000.000001includedK562AQR
MXELTV1ENSG00000135521.8chr6+1441831921441833801441839801441840331441815621441816901441842221441844230.090000.000000.000001includedK562AQR
MXELTV1ENSG00000135521.8chr6+1441712671441713551441784391441785811441671871441673611441788881441791440.093000.008530.055631includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LTV1 is not avaliable on ENCORE database.