HIST1H2BD

General Information

Gene Name       : HIST1H2BD
Gene ID             : ENSG00000158373.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HIST1H2BD)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HIST1H2BDENSG00000158373.82.703.913.31ENCSR000AEF
HepG2HIST1H2BDENSG00000158373.85.751.603.67ENCSR985KAT
K562HIST1H2BDENSG00000158373.859.3028.0443.67ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HIST1H2BD is not avaliable on ENCORE database.



Proteins bound to RNA
  • HIST1H2BD RNA is bound by 21 proteins.  







eCLIP assay for HIST1H2BD is not avaliable on ENCORE database.





21 proteins are bound to HIST1H2BD RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr62615886326158921+3'-UTR,intron-Distal,intron-Proximal4.665256.76416K562CSTF2T
chr62615877226158826+3'-UTR,5'-UTR,CDS,intron-Proximal3.661658.00629HepG2UCHL5
chr62615876526158834+3'-UTR,5'-UTR,CDS,intron-Proximal11.89007400.00000K562SLBP
chr62615878326158821+3'-UTR,5'-UTR,intron-Proximal4.513753.62912HepG2RBM15
chr62615877026158818+3'-UTR,5'-UTR,CDS,intron-Proximal3.452534.88717K562NOLC1
chr62615879326158818+3'-UTR,intron-Proximal4.825377.08889K562RBM15
chr62615877426158831+3'-UTR,5'-UTR,CDS,intron-Proximal4.1410027.29201HepG2GRWD1
chr62615877926158822+3'-UTR,5'-UTR,intron-Proximal4.156347.25463HepG2G3BP1
chr62615877826158831+3'-UTR,5'-UTR,intron-Proximal3.098357.26192HepG2HLTF
chr62615877326158823+3'-UTR,5'-UTR,CDS,intron-Proximal4.7225810.38725HepG2SUB1
chr62617128126171388+3'-UTR5.5100112.56227K562IGF2BP1
chr62615878726158814+3'-UTR,intron-Proximal4.1898017.74943K562RPS3
chr62615884626158897+3'-UTR,intron-Distal,intron-Proximal3.714636.23994K562LSM11
chr62615837726158397+5'-UTR3.4109046.67003K562YBX3
chr62615838126158413+5'-UTR,CDS3.451949.36564K562RBM15
chr62615835526158382+5'-UTR3.3817245.06277K562DDX3X
chr62615836326158444+5'-UTR,CDS3.5101149.87497K562GEMIN5
chr62615837526158431+5'-UTR,CDS3.1986734.19357HepG2GRWD1
chr62615839626158512+5'-UTR,CDS3.4756729.93464K562ZNF800
chr62615838926158475+5'-UTR,CDS3.1641861.83115K562UCHL5
chr62615836526158381+5'-UTR3.755844.22460K562RBM15
chr62615862826158642+CDS3.1443042.84995K562YBX3
chr62615857726158641+CDS3.5385322.71794K562RPS3
chr62615846626158482+CDS3.8831731.97997HepG2GRWD1
chr62615847526158559+CDS3.2238956.15206K562UCHL5
chr62615861526158628+CDS3.3316150.46301K562YBX3
chr62615842026158452+CDS3.1345157.25005K562YBX3
chr62615841226158502+CDS3.7784314.05439K562EIF3G
chr62615859426158607+CDS3.0434614.38549HepG2GRWD1
chr62615841326158420+CDS3.2131648.14343K562YBX3
chr62615852426158558+CDS3.1935812.77913HepG2GRWD1
chr62615867426158745+CDS3.8378718.39618HepG2RPS3
chr62615852726158562+CDS3.7030022.68158K562YBX3
chr62615845126158498+CDS3.4046918.67803K562RPS3
chr62615839726158413+CDS3.2153549.40457K562YBX3
chr62615839926158451+CDS3.9768137.53644K562RPS3
chr62615858026158645+CDS3.635253.30795HepG2SND1
chr62615869326158730+CDS5.3386426.39298K562RPS3
chr62615848226158512+CDS4.4571427.05906HepG2GRWD1
chr62615857226158603+CDS3.0720741.37739K562YBX3
chr62615854326158648+CDS3.6623011.48430K562PUM1
chr62615853226158580+CDS3.079233.98500HepG2SND1
chr62615843326158466+CDS3.7966945.78010HepG2GRWD1
chr62615852326158561+CDS4.439346.61983HepG2RPS3
chr62615866226158677+CDS3.1705316.11823K562YBX3
chr62615853726158662+CDS3.034997.44782K562METAP2
chr62615851926158577+CDS4.2722636.26908K562RPS3
chr62615869026158717+CDS3.0470122.07593K562YBX3
chr62616774426167778+intron-Distal6.4474121.38552K562UPF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HIST1H2BD is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HIST1H2BD is not available on ENCORE database.

  • 115 RBPs can affect the levels of HIST1H2BD.  








The Knockdown/knockout RNA-Seq assay for HIST1H2BD is not available on ENCORE database.





115 RBPs can affect the gene expression of HIST1H2BD :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HIST1H2BDENSG00000158373.7299.4508075.119701.9950026.4904025.05510HepG2ACO1
HIST1H2BDENSG00000158373.7624.83570101.668202.6195039.1972037.51830HepG2AKAP1
HIST1H2BDENSG00000158373.7194.1393075.474401.362909.043707.75600HepG2AKAP8L
HIST1H2BDENSG00000158373.7197.0235084.115401.227803.136002.29950HepG2ASCC1
HIST1H2BDENSG00000158373.7116.4000073.123500.670602.127401.51170HepG2AUH
HIST1H2BDENSG00000158373.7102.1699051.579200.986003.317402.29200HepG2BCCIP
HIST1H2BDENSG00000158373.7174.5789044.840601.960908.294706.84560HepG2BCLAF1
HIST1H2BDENSG00000158373.7105.6842046.992201.169204.199403.27360HepG2CALR
HIST1H2BDENSG00000158373.7438.4787075.105402.5454052.2567050.22800HepG2CKAP4
HIST1H2BDENSG00000158373.7218.83180101.819101.103705.060704.02180HepG2CNOT7
HIST1H2BDENSG00000158373.7552.88250122.530802.1737036.7149034.60810HepG2CPSF6
HIST1H2BDENSG00000158373.725.5124055.88830-1.131302.399901.76310HepG2DDX21
HIST1H2BDENSG00000158373.7502.08940139.139201.8513010.883009.03160HepG2DDX59
HIST1H2BDENSG00000158373.7116.3969060.566300.942403.324802.22400HepG2DDX5
HIST1H2BDENSG00000158373.7158.5438083.681500.921803.456402.77360HepG2DDX6
HIST1H2BDENSG00000158373.785.1395035.178401.275003.316802.31450HepG2EEF2
HIST1H2BDENSG00000158373.7188.5209080.412201.229103.295702.65250HepG2EIF2S1
HIST1H2BDENSG00000158373.7238.0038088.849001.421507.679506.61690HepG2EIF4A3
HIST1H2BDENSG00000158373.7340.5589086.537301.9764010.407509.11810HepG2EIF4B
HIST1H2BDENSG00000158373.7330.6011083.974701.9770024.9874023.49100HepG2ETF1
HIST1H2BDENSG00000158373.7154.3918073.407201.072505.294204.14060HepG2EWSR1
HIST1H2BDENSG00000158373.7123.9918063.845400.957503.440501.59180HepG2FMR1
HIST1H2BDENSG00000158373.7299.62130122.718601.287705.241303.84800HepG2FTO
HIST1H2BDENSG00000158373.782.7969040.547201.029902.776501.75710HepG2GNB2L1
HIST1H2BDENSG00000158373.7569.41220138.927602.035008.458507.38130HepG2GPKOW
HIST1H2BDENSG00000158373.7181.4092047.445901.9348012.2368010.86820HepG2HNRNPC
HIST1H2BDENSG00000158373.741.1835088.20090-1.098703.445601.73750HepG2HNRNPD
HIST1H2BDENSG00000158373.7145.0366062.156101.222307.097606.06370HepG2HNRNPL
HIST1H2BDENSG00000158373.7346.90000132.578501.387604.441903.66120HepG2HNRNPLL
HIST1H2BDENSG00000158373.7110.3518047.131901.227205.463404.63340HepG2HNRNPU
HIST1H2BDENSG00000158373.7197.49430115.780100.770302.993701.71050HepG2HSPD1
HIST1H2BDENSG00000158373.7235.6835084.539701.4790010.387609.16970HepG2IGF2BP2
HIST1H2BDENSG00000158373.731.4656079.37310-1.334902.647901.68690HepG2IGF2BP3
HIST1H2BDENSG00000158373.7385.68520159.271701.275805.399904.22550HepG2LARP4
HIST1H2BDENSG00000158373.7454.0873090.218902.3314028.8858027.02370HepG2MATR3
HIST1H2BDENSG00000158373.723.8182074.42290-1.643704.677203.64570HepG2MSI2
HIST1H2BDENSG00000158373.7259.6985092.337701.491703.848703.10730HepG2NCBP2
HIST1H2BDENSG00000158373.7141.5783046.498501.606203.620702.36020HepG2NONO
HIST1H2BDENSG00000158373.7164.9626093.088000.825402.789501.89870HepG2PABPC1
HIST1H2BDENSG00000158373.7285.9556046.262202.6278025.8860023.19400HepG2PCBP2
HIST1H2BDENSG00000158373.7196.1598039.174902.3239017.6192015.83860HepG2PRPF8
HIST1H2BDENSG00000158373.7156.9883064.593201.281106.925506.03790HepG2PUF60
HIST1H2BDENSG00000158373.728.5274068.51940-1.264203.237002.51110HepG2PUM2
HIST1H2BDENSG00000158373.7143.7444044.643601.686906.648905.58190HepG2RAVER1
HIST1H2BDENSG00000158373.7236.20210130.471700.856205.005703.89480HepG2RBM15
HIST1H2BDENSG00000158373.7394.1589070.183302.4895037.3396035.86110HepG2RBM22
HIST1H2BDENSG00000158373.7433.00800127.873501.7596016.6930015.29350HepG2RPLP0
HIST1H2BDENSG00000158373.788.8448043.854401.018502.825401.87270HepG2RPS10
HIST1H2BDENSG00000158373.7214.8970027.787402.9510026.5801024.99870HepG2RPS19
HIST1H2BDENSG00000158373.7126.2886044.177601.515206.372705.18870HepG2RPS2
HIST1H2BDENSG00000158373.7175.2658038.758202.1769014.2550012.71320HepG2RRP9
HIST1H2BDENSG00000158373.7110.6180048.570801.187303.889902.05980HepG2RTF1
HIST1H2BDENSG00000158373.766.8183027.893101.260203.069102.07730HepG2SERBP1
HIST1H2BDENSG00000158373.7904.5919088.028603.3611033.2400030.87290HepG2SF3A3
HIST1H2BDENSG00000158373.7296.62490131.243501.176309.171607.96090HepG2SF3B1
HIST1H2BDENSG00000158373.7373.7929061.939902.5932048.2475046.08840HepG2SLBP
HIST1H2BDENSG00000158373.7133.4056048.939601.446607.950406.94960HepG2SMN1
HIST1H2BDENSG00000158373.7675.72260146.025302.210103.313402.45450HepG2SNRNP70
HIST1H2BDENSG00000158373.7238.4960079.262401.5892013.5628012.67700HepG2SRFBP1
HIST1H2BDENSG00000158373.7250.3682092.216401.4409011.9293011.09450HepG2SRSF1
HIST1H2BDENSG00000158373.7295.1732063.779302.2103029.9738028.21850HepG2SRSF5
HIST1H2BDENSG00000158373.7235.31460116.638301.012404.123303.29970HepG2SRSF7
HIST1H2BDENSG00000158373.7224.1592075.025901.5790015.1490014.04240HepG2SRSF9
HIST1H2BDENSG00000158373.7136.0160068.806200.983104.364003.75030HepG2SSB
HIST1H2BDENSG00000158373.7163.0149072.532101.168206.941606.03460HepG2SUCLG1
HIST1H2BDENSG00000158373.7337.6430050.490702.7413028.8848027.12040HepG2SUPV3L1
HIST1H2BDENSG00000158373.722.5297082.89710-1.879507.110206.28310HepG2TAF15
HIST1H2BDENSG00000158373.7348.17620129.145201.4307014.0887012.65760HepG2TARDBP
HIST1H2BDENSG00000158373.776.3598033.853301.173403.998202.82600HepG2TFIP11
HIST1H2BDENSG00000158373.727.6009076.16120-1.464304.772503.68420HepG2TIA1
HIST1H2BDENSG00000158373.7263.8676045.779402.5269029.3648028.05180HepG2TIAL1
HIST1H2BDENSG00000158373.781.9126046.208000.825802.468901.92940HepG2TRIM56
HIST1H2BDENSG00000158373.7120.6097078.067200.627502.148801.52080HepG2UPF1
HIST1H2BDENSG00000158373.7235.4534048.534302.2783024.8907023.24060HepG2ZC3H8
HIST1H2BDENSG00000158373.7268.1734085.860001.643007.678506.88530HepG2ZNF622
HIST1H2BDENSG00000158373.7920.42040558.659900.7202011.765608.76500K562AKAP1
HIST1H2BDENSG00000158373.71066.87710772.350700.466004.451103.13370K562AKAP8
HIST1H2BDENSG00000158373.71092.98170731.350700.579506.398505.37430K562AKAP8L
HIST1H2BDENSG00000158373.7779.292501027.45810-0.398803.223601.88550K562APOBEC3C
HIST1H2BDENSG00000158373.7771.53530593.834900.377603.437402.36250K562BCLAF1
HIST1H2BDENSG00000158373.7966.66450612.596300.658006.337905.00630K562BOP1
HIST1H2BDENSG00000158373.7958.66940706.723000.439804.537902.58770K562CEBPZ
HIST1H2BDENSG00000158373.7981.54780651.404600.591406.381305.19050K562CPSF6
HIST1H2BDENSG00000158373.7525.41120295.548600.830005.221502.72560K562DDX1
HIST1H2BDENSG00000158373.71194.80460812.242900.556708.630906.49530K562DDX21
HIST1H2BDENSG00000158373.7690.318501101.38930-0.674005.925105.02330K562DDX47
HIST1H2BDENSG00000158373.7632.32730786.94150-0.315602.394501.58760K562DKC1
HIST1H2BDENSG00000158373.7766.47300621.751900.301802.497101.36140K562EIF2S1
HIST1H2BDENSG00000158373.7419.07200635.62650-0.601004.258303.39490K562EIF2S2
HIST1H2BDENSG00000158373.7122.15950285.16540-1.223003.058301.99490K562EIF3A
HIST1H2BDENSG00000158373.7763.49220591.384900.368402.524601.74150K562EIF4A3
HIST1H2BDENSG00000158373.7840.26730561.676500.581004.683103.46540K562FTO
HIST1H2BDENSG00000158373.7416.24920615.01460-0.563205.599904.78110K562FXR1
HIST1H2BDENSG00000158373.7467.946401058.90230-1.178209.837806.19220K562FXR2
HIST1H2BDENSG00000158373.7251.44770492.74870-0.970607.504206.22110K562G3BP2
HIST1H2BDENSG00000158373.7825.27330621.962300.407902.827402.02370K562GPKOW
HIST1H2BDENSG00000158373.71123.44430846.920100.407503.097402.30050K562GRSF1
HIST1H2BDENSG00000158373.71003.95640658.814200.607702.505801.36140K562HNRNPA2B1
HIST1H2BDENSG00000158373.7347.02970585.91230-0.755606.368304.43670K562HNRNPK
HIST1H2BDENSG00000158373.71287.34350857.012300.586908.885307.29330K562HNRNPU
HIST1H2BDENSG00000158373.7654.21570847.55500-0.373502.501901.74170K562HSPD1
HIST1H2BDENSG00000158373.71738.410901129.885300.621503.387901.79230K562ILF2
HIST1H2BDENSG00000158373.7442.70550292.962100.595502.807001.30200K562ILF3
HIST1H2BDENSG00000158373.71041.00590776.121100.423504.002402.98670K562KIF1C
HIST1H2BDENSG00000158373.7716.13050530.996500.431402.175401.35900K562KRR1
HIST1H2BDENSG00000158373.7391.90020574.12650-0.550902.990601.53980K562LARP7
HIST1H2BDENSG00000158373.71629.654401241.159000.392802.863701.71200K562MSI2
HIST1H2BDENSG00000158373.7428.44200590.53970-0.462903.543202.13890K562NCBP2
HIST1H2BDENSG00000158373.71235.589301003.069400.300704.024903.14320K562NSUN2
HIST1H2BDENSG00000158373.7879.81420576.418100.610002.498001.57060K562PABPN1
HIST1H2BDENSG00000158373.71918.13080986.646500.9590014.0890012.24140K562PCBP3
HIST1H2BDENSG00000158373.71432.28740756.770200.920306.823405.57510K562POLR2G
HIST1H2BDENSG00000158373.7345.88670514.08950-0.571703.651002.78940K562PRPF8
HIST1H2BDENSG00000158373.7866.800101351.79300-0.641106.026004.39720K562PUM1
HIST1H2BDENSG00000158373.71852.605601324.052600.484506.208704.75310K562PUM2
HIST1H2BDENSG00000158373.71018.48480725.248800.489804.301603.64680K562PUS1
HIST1H2BDENSG00000158373.71044.00720706.687500.562903.584502.92340K562RBM15
HIST1H2BDENSG00000158373.7277.18850467.19270-0.753206.616504.46560K562RBM25
HIST1H2BDENSG00000158373.7417.91970604.42380-0.532303.893602.57070K562NELFE
HIST1H2BDENSG00000158373.7299.13320523.65990-0.807805.872904.67810K562RPS19
HIST1H2BDENSG00000158373.7456.60830791.37160-0.793407.464805.71250K562RPS3
HIST1H2BDENSG00000158373.7400.00120674.36740-0.753507.823106.04470K562SAFB
HIST1H2BDENSG00000158373.71425.42450989.848500.526008.478407.11090K562SF3A3
HIST1H2BDENSG00000158373.7348.58830512.19990-0.555204.731003.60140K562SF3B4
HIST1H2BDENSG00000158373.7757.15940308.716801.2942020.1696017.14820K562SLBP
HIST1H2BDENSG00000158373.7857.630901014.12800-0.241802.175501.33650K562SRPK2
HIST1H2BDENSG00000158373.7983.71010724.760800.440605.393303.74160K562SRSF7
HIST1H2BDENSG00000158373.71166.19100820.221400.507604.546802.75510K562SSRP1
HIST1H2BDENSG00000158373.71001.27980750.199300.416402.787701.53260K562STAU1
HIST1H2BDENSG00000158373.71544.478501108.484200.478405.411003.39590K562SUCLG1
HIST1H2BDENSG00000158373.7319.48140759.08970-1.2485019.9552017.84940K562SYNCRIP
HIST1H2BDENSG00000158373.7346.11070513.45950-0.569004.156402.17390K562TBRG4
HIST1H2BDENSG00000158373.7232.36930477.44010-1.038909.211607.03840K562U2AF1
HIST1H2BDENSG00000158373.7323.16490493.15500-0.609805.331004.22080K562U2AF2
HIST1H2BDENSG00000158373.7710.57760946.40690-0.413505.090903.97290K562WDR43
HIST1H2BDENSG00000158373.71310.970001020.858700.360803.197001.79730K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HIST1H2BD is not available on ENCORE database.





2 RBPs can affect the splicing of HIST1H2BD :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEHIST1H2BDENSG00000158373.7chr6+261596352615971826158373261587872617120226171577-0.283000.000030.00497excludedHepG2SUPV3L1
SEHIST1H2BDENSG00000158373.7chr6+2615950526159718261583732615878726171202261715770.138000.000000.00000includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HIST1H2BD is not avaliable on ENCORE database.