CTH

General Information

Gene Name       : CTH
Gene ID             : ENSG00000116761.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTH)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CTHENSG00000116761.118.127.477.79ENCSR000AEF
HepG2CTHENSG00000116761.115.288.336.80ENCSR985KAT
K562CTHENSG00000116761.1132.7528.2630.51ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTH is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTH RNA is bound by 7 proteins.  







eCLIP assay for CTH is not avaliable on ENCORE database.





7 proteins are bound to CTH RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr17090502470905099+3'-UTR4.057474.43788HepG2SUB1
chr17090503170905205+3'-UTR4.790305.78691HepG2FUBP3
chr17090503070905082+3'-UTR3.464614.11066K562NOLC1
chr17087713170877193+CDS3.408273.56169K562RBM15
chr17090079870900856+CDS,intron-Proximal4.497844.93985K562GPKOW
chr17090080470900860+CDS,intron-Proximal3.105855.37470K562U2AF2
chr17089599270896043+CDS,intron-Proximal4.090473.77215K562U2AF2
chr17088723570887301+CDS,intron-Proximal3.520053.32861HepG2U2AF2
chr17089191370892033+intron-Distal4.856083.92866K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTH is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTH is not available on ENCORE database.

  • 139 RBPs can affect the levels of CTH.  








The Knockdown/knockout RNA-Seq assay for CTH is not available on ENCORE database.





139 RBPs can affect the gene expression of CTH :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTHENSG00000116761.7150.34540243.30370-0.694502.777101.83310HepG2ABCF1
CTHENSG00000116761.7287.86920410.38270-0.511602.340901.84740HepG2AKAP1
CTHENSG00000116761.749.82750141.10640-1.501808.965507.68370HepG2AKAP8L
CTHENSG00000116761.7248.78680339.55250-0.448701.985301.31600HepG2ASCC1
CTHENSG00000116761.7243.60510413.47730-0.763307.709806.65680HepG2AUH
CTHENSG00000116761.744.08400143.93710-1.707109.085408.07860HepG2BOP1
CTHENSG00000116761.7262.26600192.833100.443601.975301.31510HepG2CALR
CTHENSG00000116761.7303.26470200.405400.597602.520801.46500HepG2CPSF7
CTHENSG00000116761.7187.82790129.902400.531902.580701.77310HepG2DDX19B
CTHENSG00000116761.7201.04720110.720700.860504.432703.26650HepG2DDX24
CTHENSG00000116761.779.16760131.99040-0.737502.336301.61910HepG2DDX55
CTHENSG00000116761.7373.64560150.054601.316106.236104.79810HepG2DDX59
CTHENSG00000116761.7462.67650337.709700.454102.124501.57600HepG2DDX6
CTHENSG00000116761.7234.98070131.483800.837604.931903.64030HepG2DHX30
CTHENSG00000116761.7229.40390136.320800.750804.522403.64010HepG2DNAJC21
CTHENSG00000116761.7184.98050135.127600.453001.978401.41000HepG2DNAJC2
CTHENSG00000116761.787.66930148.29790-0.758402.788401.67520HepG2EFTUD2
CTHENSG00000116761.7166.25120324.62460-0.965406.414605.53250HepG2EIF2S1
CTHENSG00000116761.7350.00530184.596000.922907.473105.67140HepG2EIF2S2
CTHENSG00000116761.7150.00340358.73680-1.2579010.421609.20100HepG2EIF4A3
CTHENSG00000116761.7651.60130349.302700.899406.496905.47420HepG2EIF4B
CTHENSG00000116761.7804.25720474.773700.7603011.1935010.11610HepG2ETF1
CTHENSG00000116761.7247.36480137.238900.849905.313104.15630HepG2EWSR1
CTHENSG00000116761.7208.36790361.98540-0.796805.106004.18630HepG2FXR1
CTHENSG00000116761.7160.66580335.77610-1.063407.903406.80920HepG2G3BP1
CTHENSG00000116761.796.75620196.61100-1.022905.301103.88630HepG2GNB2L1
CTHENSG00000116761.7406.89800250.756900.698303.299401.80060HepG2HNRNPA0
CTHENSG00000116761.749.03120153.08800-1.642608.509207.34520HepG2HNRNPC
CTHENSG00000116761.7169.54560340.04680-1.004107.290606.19680HepG2HNRNPK
CTHENSG00000116761.7217.65370142.939800.606502.391901.80130HepG2HNRNPLL
CTHENSG00000116761.7228.99190341.30260-0.575803.068002.36160HepG2IGF2BP2
CTHENSG00000116761.7190.03900320.32410-0.753202.428701.51490HepG2IGF2BP3
CTHENSG00000116761.7187.14860343.30430-0.875304.966303.58610HepG2KHSRP
CTHENSG00000116761.7219.32470128.389900.772404.988303.62500HepG2KIF1C
CTHENSG00000116761.7102.21480192.66100-0.914504.859703.35840HepG2LARP7
CTHENSG00000116761.7172.70020362.11200-1.068208.275807.15270HepG2MAGOH
CTHENSG00000116761.797.35060163.09230-0.744403.192001.45370HepG2MARK2
CTHENSG00000116761.7147.64100364.13300-1.3024010.393709.23240HepG2MATR3
CTHENSG00000116761.7102.97330166.99010-0.697502.777801.56030HepG2NAA15
CTHENSG00000116761.7115.80140372.70570-1.6864017.1424015.65190HepG2NCBP2
CTHENSG00000116761.7589.37250358.503000.717104.653902.80930HepG2NKRF
CTHENSG00000116761.7118.75800236.82930-0.995806.731805.54780HepG2NOL12
CTHENSG00000116761.7317.33050126.749701.3239010.596509.20940HepG2NSUN2
CTHENSG00000116761.7675.47590271.354901.3156010.692508.91620HepG2PABPC1
CTHENSG00000116761.7217.06760331.89750-0.612603.272202.48940HepG2PABPC4
CTHENSG00000116761.7498.60440266.278300.904903.925802.10940HepG2PNPT1
CTHENSG00000116761.7259.12160135.638700.933807.194106.04490HepG2PPIL4
CTHENSG00000116761.7240.03760343.53860-0.517203.516702.65500HepG2PRPF4
CTHENSG00000116761.7133.63340319.20150-1.2562013.5359012.50730HepG2PTBP1
CTHENSG00000116761.7146.79650226.08430-0.623002.739602.14580HepG2PUF60
CTHENSG00000116761.7302.63540216.474600.483302.618001.78170HepG2RBM15
CTHENSG00000116761.7147.44250396.81330-1.4283017.9254016.83930HepG2RBM22
CTHENSG00000116761.7520.70660286.745400.860603.419101.72370HepG2RBM47
CTHENSG00000116761.7171.17930355.24540-1.053309.949409.04090HepG2NELFE
CTHENSG00000116761.7218.93790330.85410-0.595703.954403.23410HepG2RECQL
CTHENSG00000116761.764.78750184.35680-1.508709.438908.30000HepG2RPLP0
CTHENSG00000116761.749.25510140.50230-1.512207.897306.92120HepG2RPS19
CTHENSG00000116761.768.02900214.25290-1.6551012.1541010.57260HepG2RPS2
CTHENSG00000116761.7448.99180280.502900.678602.931801.58330HepG2SART3
CTHENSG00000116761.739.42700141.02750-1.838709.871908.13370HepG2SERBP1
CTHENSG00000116761.7104.80300222.19390-1.084105.973604.95890HepG2SF3A3
CTHENSG00000116761.7244.93570141.477200.791704.082903.24130HepG2SF3B1
CTHENSG00000116761.7573.83100448.168900.356502.367601.89250HepG2SRFBP1
CTHENSG00000116761.7138.13100346.88710-1.3284014.5125013.61030HepG2SRSF1
CTHENSG00000116761.7125.74410223.23940-0.828104.903504.10780HepG2SRSF5
CTHENSG00000116761.7373.53510282.207500.404402.566102.02990HepG2SRSF9
CTHENSG00000116761.7227.16120389.08680-0.776407.667806.89680HepG2SSB
CTHENSG00000116761.7261.00490164.134700.669103.272201.93060HepG2STAU1
CTHENSG00000116761.7394.55360258.974100.607302.505201.46760HepG2STIP1
CTHENSG00000116761.7239.49570124.627800.942303.923302.48030HepG2SUB1
CTHENSG00000116761.7154.25680253.87270-0.718804.353703.60730HepG2SUCLG1
CTHENSG00000116761.7665.79340381.627800.802806.022004.06790HepG2SUGP2
CTHENSG00000116761.7447.41550311.783800.521003.874003.22900HepG2TAF15
CTHENSG00000116761.7190.85190370.16200-0.955704.016302.74660HepG2TBRG4
CTHENSG00000116761.787.48500147.75680-0.756102.963902.44860HepG2TIAL1
CTHENSG00000116761.7130.44620210.18900-0.688202.765602.13680HepG2U2AF1
CTHENSG00000116761.7131.88740197.05320-0.579302.718602.02470HepG2UPF1
CTHENSG00000116761.7216.21920339.04950-0.649005.231604.35620HepG2ZC3H8
CTHENSG00000116761.7393.16600216.719100.859209.637508.77250HepG2ZNF622
CTHENSG00000116761.7484.86950795.59330-0.714407.028805.10060K562ABCF1
CTHENSG00000116761.7207.88490479.29410-1.205106.393803.88920K562ADAR
CTHENSG00000116761.72336.707904331.95330-0.8905012.9828011.85180K562AGGF1
CTHENSG00000116761.72163.256004507.54120-1.0591027.0675024.63320K562AKAP8L
CTHENSG00000116761.7577.87820930.87200-0.687803.019601.72180K562APOBEC3C
CTHENSG00000116761.7591.92450937.24520-0.663002.784202.19440K562AQR
CTHENSG00000116761.72789.380004729.39650-0.7617022.7421019.95770K562ATP5C1
CTHENSG00000116761.7385.65850554.21980-0.523103.140101.60640K562BUD13
CTHENSG00000116761.7247.37730469.30380-0.923808.916406.70690K562CCAR1
CTHENSG00000116761.73986.553005177.09260-0.377005.524903.82560K562CCDC124
CTHENSG00000116761.7818.825401163.57730-0.506902.541201.53090K562CNOT7
CTHENSG00000116761.7606.18840849.88490-0.487505.315803.74620K562CPEB4
CTHENSG00000116761.7278.96210501.68980-0.846704.320401.94400K562CPSF7
CTHENSG00000116761.7210.89840512.62780-1.2814010.961807.75730K562YBX3
CTHENSG00000116761.73652.430605082.56290-0.476705.842203.67670K562DDX19B
CTHENSG00000116761.7249.32700494.45800-0.987806.783804.01650K562DDX1
CTHENSG00000116761.7448.44270636.88230-0.506104.225302.89720K562DDX3X
CTHENSG00000116761.7277.27200879.24170-1.6650037.1183034.99670K562DDX47
CTHENSG00000116761.7317.86140525.34420-0.724903.083201.67720K562DHX30
CTHENSG00000116761.7253.78420504.67690-0.9918010.321807.95250K562DNAJC21
CTHENSG00000116761.7310.56530534.96420-0.784504.140501.94550K562DNAJC2
CTHENSG00000116761.7293.00850428.35280-0.547902.876401.56970K562EEF2
CTHENSG00000116761.7194.81470413.89020-1.087109.940308.10760K562EFTUD2
CTHENSG00000116761.7939.29290497.134300.917809.112407.92120K562EIF2S2
CTHENSG00000116761.7124.97900477.37960-1.9335017.6204015.20970K562EIF3A
CTHENSG00000116761.7175.79330443.18010-1.3340012.9717010.55240K562EIF3D
CTHENSG00000116761.7170.170001038.59920-2.6096015.2126013.28780K562EIF3G
CTHENSG00000116761.7428.45240665.39000-0.635105.901804.71260K562EIF4A3
CTHENSG00000116761.7278.21730512.42280-0.881104.343001.82290K562EIF4G1
CTHENSG00000116761.7536.089001055.06440-0.976804.955603.71730K562EIF4G2
CTHENSG00000116761.7267.54010691.97850-1.3710026.8085025.04860K562FXR1
CTHENSG00000116761.71923.562901179.453800.705604.401701.72000K562FXR2
CTHENSG00000116761.71227.09900713.677900.781807.030305.78910K562G3BP2
CTHENSG00000116761.7371.29310662.49080-0.835306.327505.17750K562GRSF1
CTHENSG00000116761.71127.84100594.883200.9228015.9859013.71260K562HNRNPA1
CTHENSG00000116761.73023.816204576.96660-0.598002.632401.45330K562HNRNPA2B1
CTHENSG00000116761.7567.913301088.85510-0.939107.508105.03250K562HNRNPAB
CTHENSG00000116761.7122.80280591.71670-2.2686042.5072040.25450K562HNRNPC
CTHENSG00000116761.7272.98840528.41170-0.9528010.002607.79870K562HNRNPF
CTHENSG00000116761.7570.42310794.64450-0.478304.162902.83850K562HNRNPL
CTHENSG00000116761.7920.94700658.744100.483305.237803.99440K562HNRNPU
CTHENSG00000116761.72525.13750775.420301.7032050.6879048.03030K562HSPD1
CTHENSG00000116761.7288.90820473.90950-0.714005.030403.03630K562KHDRBS1
CTHENSG00000116761.73281.223704783.81200-0.543903.721502.74480K562KIF1C
CTHENSG00000116761.7769.95280460.624700.741105.342403.99130K562KRR1
CTHENSG00000116761.7522.035701182.94250-1.1802024.5749021.81250K562MAGOH
CTHENSG00000116761.73793.878804579.13580-0.271402.448801.45820K562MAK16
CTHENSG00000116761.7700.803501180.50870-0.7523011.478109.49410K562MATR3
CTHENSG00000116761.74469.609505359.05210-0.261802.807801.89110K562MBNL1
CTHENSG00000116761.7775.883601124.48830-0.535402.375901.33290K562MSI2
CTHENSG00000116761.7431.93350657.20300-0.605502.870002.04620K562MTPAP
CTHENSG00000116761.72048.894203756.29120-0.874506.543504.97410K562NAA15
CTHENSG00000116761.7441.795501117.85570-1.3393013.0159010.39480K562PABPC1
CTHENSG00000116761.72263.583104005.15770-0.823304.639803.26640K562PABPN1
CTHENSG00000116761.71744.598301156.428300.593103.269001.79360K562PCBP1
CTHENSG00000116761.7380.626501052.48510-1.4674029.9084026.78480K562PCBP2
CTHENSG00000116761.7395.16070710.19560-0.845807.951106.54190K562PCBP3
CTHENSG00000116761.71931.067801084.148200.832708.746806.45400K562PNPT1
CTHENSG00000116761.7266.55580544.73600-1.0311012.8842011.22010K562POLR2G
CTHENSG00000116761.7643.953301035.08330-0.684704.670002.32130K562PPIL4
CTHENSG00000116761.7180.15060402.76210-1.1607010.047508.61330K562PRPF8
CTHENSG00000116761.7330.836401149.31940-1.7966051.7609049.03010K562PTBP1
CTHENSG00000116761.7566.600701151.06980-1.022605.267004.14420K562PUF60
CTHENSG00000116761.71807.716304470.62030-1.3063034.4380032.47850K562PUS1
CTHENSG00000116761.71906.037904355.63420-1.1923049.3787046.75340K562RBM15
CTHENSG00000116761.71034.48670628.235900.719409.022906.21170K562RBM17
CTHENSG00000116761.7447.237901101.93800-1.3009025.2671022.52690K562RBM22
CTHENSG00000116761.7700.57220484.058000.533304.585903.30740K562RCC2
CTHENSG00000116761.7658.901001159.64210-0.815507.098405.26810K562NELFE
CTHENSG00000116761.7566.751801022.69890-0.851604.053502.15130K562RPS10
CTHENSG00000116761.7149.97830410.27960-1.4519013.5174011.68670K562RPS19
CTHENSG00000116761.7629.021901037.74630-0.722304.520802.46170K562RPS3A
CTHENSG00000116761.7471.91170852.23970-0.852704.948802.55980K562SAFB2
CTHENSG00000116761.72092.085903663.74500-0.808403.879702.38060K562SF1
CTHENSG00000116761.7394.68050720.57060-0.868504.620103.58860K562SF3A3
CTHENSG00000116761.7422.80780742.33040-0.8121010.987909.22060K562SF3B4
CTHENSG00000116761.7339.55680516.96510-0.606403.814402.31030K562SLBP
CTHENSG00000116761.7456.14730738.25040-0.694608.210506.69310K562SRPK2
CTHENSG00000116761.7218.050301126.74130-2.3694073.7633070.42620K562SRSF1
CTHENSG00000116761.71489.295701064.184400.484804.830503.37290K562SRSF5
CTHENSG00000116761.7417.156801140.28170-1.4507028.6805025.90110K562TARDBP
CTHENSG00000116761.71167.44390744.118000.649606.396503.93840K562TBRG4
CTHENSG00000116761.7222.53430355.48560-0.675804.165702.12230K562TFIP11
CTHENSG00000116761.71582.842901099.944600.525002.986302.13120K562TIA1
CTHENSG00000116761.71501.738401079.500800.476204.838503.31780K562TRA2A
CTHENSG00000116761.7399.51940692.04550-0.792606.870604.99260K562U2AF1
CTHENSG00000116761.7530.24740714.64740-0.430603.602802.68430K562U2AF2
CTHENSG00000116761.7556.79960412.746500.431802.552501.58020K562UCHL5
CTHENSG00000116761.7606.37710774.18390-0.352501.971201.35790K562UPF1
CTHENSG00000116761.7669.962601099.78300-0.715106.985505.12500K562UTP3
CTHENSG00000116761.7398.44960688.92310-0.789909.873908.38460K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTH is not available on ENCORE database.





10 RBPs can affect the splicing of CTH :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECTHENSG00000116761.7chr1+708954767089553470889967708900997089599970896077-0.073000.006320.08858excludedK562SF3B4
SECTHENSG00000116761.7chr1+708836197088371570881638708817207088724870887358-0.101000.000750.00959excludedK562AQR
SECTHENSG00000116761.7chr1+708995107089963270897765708979187090437070904509-0.131000.000800.01010excludedK562AQR
SECTHENSG00000116761.7chr1+709008077090086070897765708979187090437070904509-0.102000.000000.00000excludedK562PUS1
SECTHENSG00000116761.7chr1+709008077090086070897765708979187090437070904509-0.076000.000000.00002excludedK562UTP18
A3SSCTHENSG00000116761.7chr1+7089774770897905708977657089790570895999708960770.085000.000590.00430longerK562AQR
MXECTHENSG00000116761.7chr1+70889967708900997089547670895534708872487088735870895999708960770.155000.001970.052281includedK562UCHL5
MXECTHENSG00000116761.7chr1+70887248708873587088996770890099708816387088172070895476708955340.094000.000450.018241includedK562RBM15
MXECTHENSG00000116761.7chr1+70881638708817207088361970883715708769547087726670887248708873580.113000.000000.000261includedK562DROSHA
MXECTHENSG00000116761.7chr1+70881612708817207088361970883715708769547087726670887248708873580.099000.001560.013391includedK562AQR
MXECTHENSG00000116761.7chr1+70889967708900997089547670895534708872487088735870895999708960770.104000.000430.065021includedK562TBRG4
MXECTHENSG00000116761.7chr1+70889967708900997089547670895534708872487088735870895999708960770.105000.000810.033531includedK562TAF15
MXECTHENSG00000116761.7chr1+70881638708817207088361970883715708769547087726670887248708873580.075000.001800.034241includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CTH is not avaliable on ENCORE database.