CHD7

General Information

Gene Name : CHD7
Gene ID : ENSG00000171316.11
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CHD7)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CHD7	ENSG00000171316.11	24.86	21.45	23.16	ENCSR000AEF
HepG2	CHD7	ENSG00000171316.11	26.43	24.98	25.70	ENCSR985KAT
K562	CHD7	ENSG00000171316.11	17.09	20.91	19.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CHD7 is not avaliable on ENCORE database.

Proteins bound to RNA

CHD7 RNA is bound by 39 proteins.

eCLIP assay for CHD7 is not avaliable on ENCORE database.

39 proteins are bound to CHD7 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	61713011	61713052	+	3'-UTR,CDS,intron-Distal	4.14936	4.21087	HepG2	GRWD1
chr8	61779340	61779416	+	3'-UTR	5.12857	5.43918	HepG2	FUBP3
chr8	61693639	61693673	+	3'-UTR,CDS,intron-Proximal	4.58110	4.13543	HepG2	FXR2
chr8	61713010	61713066	+	3'-UTR,CDS,intron-Distal	4.30211	4.10264	K562	ZNF622
chr8	61653893	61653964	+	3'-UTR,5'-UTR	4.89525	7.64336	HepG2	GRWD1
chr8	61653907	61653957	+	3'-UTR,5'-UTR	4.64957	4.78571	K562	UCHL5
chr8	61653902	61653971	+	3'-UTR,5'-UTR	3.62286	9.83277	HepG2	BCLAF1
chr8	61707621	61707687	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.31087	3.87995	K562	UCHL5
chr8	61693673	61693820	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.76149	3.33003	HepG2	TRA2A
chr8	61591608	61591640	+	5'-UTR	3.45714	3.48848	HepG2	FXR2
chr8	61591522	61591590	+	5'-UTR	3.64046	7.77439	HepG2	DDX3X
chr8	61592136	61592191	+	5'-UTR,intron-Distal	3.62372	5.82968	HepG2	CSTF2T
chr8	61655370	61655456	+	5'-UTR,CDS,intron-Proximal	3.07285	4.09989	K562	UCHL5
chr8	61591452	61591486	+	5'-UTR	4.00395	3.79347	HepG2	GRWD1
chr8	61655593	61655649	+	5'-UTR,CDS	3.48720	4.41784	HepG2	GRWD1
chr8	61750658	61750723	+	CDS,intron-Distal	4.51306	4.78571	K562	UCHL5
chr8	61748789	61748836	+	CDS,intron-Distal	3.38345	4.06531	HepG2	GRWD1
chr8	61655275	61655321	+	CDS,intron-Distal,intron-Proximal	3.22039	6.86395	HepG2	BCLAF1
chr8	61777755	61777835	+	CDS	3.21741	5.80517	HepG2	GRWD1
chr8	61765983	61766055	+	CDS,intron-Distal	3.70710	4.87139	HepG2	FXR2
chr8	61736457	61736480	+	CDS,intron-Distal	3.77650	4.93978	HepG2	BCLAF1
chr8	61761052	61761107	+	CDS,intron-Distal,intron-Proximal	4.18410	12.93110	HepG2	U2AF2
chr8	61769243	61769279	+	CDS,intron-Distal	3.15955	5.35431	HepG2	BCLAF1
chr8	61761139	61761200	+	CDS,intron-Distal,intron-Proximal	3.82658	3.71591	HepG2	PRPF8
chr8	61765550	61765620	+	CDS,intron-Distal	3.56854	5.80880	HepG2	GRWD1
chr8	61763822	61763869	+	CDS,intron-Distal	3.10820	3.61755	HepG2	FXR2
chr8	61754482	61754522	+	CDS,intron-Distal	3.17027	3.60157	HepG2	GRWD1
chr8	61748700	61748720	+	CDS,intron-Distal	3.59170	5.15500	HepG2	BCLAF1
chr8	61734643	61734675	+	CDS,intron-Distal	3.87282	5.35703	HepG2	BCLAF1
chr8	61778410	61778481	+	CDS	3.56996	5.14242	HepG2	G3BP1
chr8	61693734	61693775	+	CDS,intron-Distal	4.45714	4.13543	HepG2	FXR2
chr8	61757605	61757659	+	CDS,intron-Distal,intron-Proximal	4.05527	4.75655	HepG2	PRPF8
chr8	61765074	61765186	+	CDS,intron-Distal	4.23405	16.23904	HepG2	BCLAF1
chr8	61765056	61765078	+	CDS,intron-Distal,intron-Proximal	3.95316	3.16051	HepG2	PPIG
chr8	61654795	61654868	+	CDS,intron-Distal	4.31603	5.08471	HepG2	HNRNPK
chr8	61655277	61655308	+	CDS,intron-Distal,intron-Proximal	4.08160	3.11168	K562	ZNF622
chr8	61763824	61763901	+	CDS,intron-Distal,intron-Proximal	3.27243	3.50696	K562	BUD13
chr8	61765121	61765192	+	CDS,intron-Distal	4.20452	5.50166	HepG2	FXR2
chr8	61654603	61654669	+	CDS,intron-Distal	5.63335	12.36703	HepG2	LIN28B
chr8	61769426	61769487	+	CDS,intron-Distal,intron-Proximal	3.49984	4.22621	HepG2	PRPF8
chr8	61765109	61765187	+	CDS,intron-Distal	3.08868	3.26275	K562	BUD13
chr8	61743035	61743088	+	CDS,intron-Distal	4.39536	11.11870	HepG2	BCLAF1
chr8	61735240	61735305	+	CDS,intron-Distal	3.52076	3.80299	HepG2	GRWD1
chr8	61654256	61654346	+	CDS	4.01806	6.68017	K562	UCHL5
chr8	61735170	61735213	+	CDS,intron-Distal	3.14936	3.60157	HepG2	GRWD1
chr8	61732605	61732649	+	CDS,intron-Distal	4.29220	3.49332	HepG2	PPIG
chr8	61777943	61778014	+	CDS	3.33763	3.77614	HepG2	G3BP1
chr8	61763056	61763102	+	CDS,intron-Distal	4.26721	4.01763	HepG2	GRWD1
chr8	61734685	61734701	+	CDS,intron-Distal	3.56734	3.68471	HepG2	BCLAF1
chr8	61757887	61757933	+	CDS,intron-Distal	4.34433	5.11007	HepG2	GRWD1
chr8	61654085	61654169	+	CDS	3.93933	3.66655	K562	YBX3
chr8	61777601	61777642	+	CDS	3.09784	5.00751	HepG2	BCLAF1
chr8	61693833	61693923	+	CDS,intron-Distal	3.12696	6.53022	HepG2	FXR2
chr8	61757533	61757611	+	CDS,intron-Distal	3.81789	6.91167	HepG2	GRWD1
chr8	61693726	61693777	+	CDS,intron-Distal	5.29107	7.73487	HepG2	BCLAF1
chr8	61777555	61777651	+	CDS,intron-Proximal	3.46379	3.77784	K562	RBM15
chr8	61774761	61774794	+	CDS,intron-Proximal	5.12255	7.73487	HepG2	BCLAF1
chr8	61742974	61743035	+	CDS,intron-Distal	5.65084	7.95223	HepG2	BCLAF1
chr8	61743031	61743087	+	CDS,intron-Distal	3.68782	5.28199	HepG2	GRWD1
chr8	61654394	61654463	+	CDS,intron-Proximal	3.23380	5.12345	HepG2	GRWD1
chr8	61654927	61655058	+	CDS,intron-Distal	4.82699	7.84269	K562	IGF2BP1
chr8	61732605	61732636	+	CDS,intron-Distal	5.38136	7.04013	HepG2	BCLAF1
chr8	61750643	61750711	+	CDS,intron-Distal	3.58433	4.45064	HepG2	GRWD1
chr8	61693954	61694023	+	CDS,intron-Distal,intron-Proximal	4.65925	4.02817	HepG2	PRPF8
chr8	61773483	61773554	+	CDS,intron-Distal	4.33579	5.91377	HepG2	FXR2
chr8	61654603	61654712	+	CDS,intron-Distal	5.84183	16.39907	K562	LIN28B
chr8	61773517	61773559	+	CDS,intron-Distal	3.98402	4.93978	HepG2	BCLAF1
chr8	61654743	61654789	+	CDS,intron-Distal	3.54653	5.11891	HepG2	GRWD1
chr8	61693753	61693831	+	CDS,intron-Distal	3.34455	3.95937	K562	UCHL5
chr8	61754407	61754415	+	CDS,intron-Distal	4.46914	4.70478	HepG2	BCLAF1
chr8	61735044	61735116	+	CDS,intron-Distal,intron-Proximal	3.25011	3.80334	HepG2	U2AF2
chr8	61736558	61736568	+	CDS,intron-Distal	4.46914	4.70478	HepG2	BCLAF1
chr8	61773632	61773670	+	CDS,intron-Distal	3.05410	4.61799	HepG2	BCLAF1
chr8	61736481	61736561	+	CDS,intron-Distal	4.22647	8.39611	HepG2	GRWD1
chr8	61750722	61750777	+	CDS,intron-Distal	4.60254	8.41475	HepG2	BCLAF1
chr8	61750657	61750722	+	CDS,intron-Distal	3.49538	10.08874	HepG2	BCLAF1
chr8	61734601	61734614	+	CDS,intron-Distal	4.57061	5.03746	HepG2	BCLAF1
chr8	61743121	61743176	+	CDS,intron-Distal,intron-Proximal	3.56174	4.83899	HepG2	PRPF8
chr8	61757412	61757464	+	CDS,intron-Distal,intron-Proximal	3.39264	3.55754	HepG2	U2AF2
chr8	61765685	61765756	+	CDS,intron-Distal	3.68365	6.18214	HepG2	GRWD1
chr8	61735286	61735304	+	CDS,intron-Distal	4.83762	6.04243	HepG2	BCLAF1
chr8	61750651	61750704	+	CDS,intron-Distal	3.54614	4.87139	HepG2	FXR2
chr8	61757787	61757834	+	CDS,intron-Distal,intron-Proximal	3.47761	3.55754	HepG2	U2AF2
chr8	61592697	61592769	+	intron-Distal	3.20886	4.00685	K562	TIA1
chr8	61592664	61592756	+	intron-Distal	4.22298	17.64729	HepG2	CSTF2T
chr8	61725705	61725809	+	intron-Distal	4.72351	7.69142	K562	KHSRP
chr8	61597846	61597896	+	intron-Distal	3.54602	4.61282	K562	EXOSC5
chr8	61605450	61605507	+	intron-Distal	3.51719	3.35377	HepG2	QKI
chr8	61591777	61591873	+	intron-Distal	5.07854	9.69835	HepG2	PRPF4
chr8	61592994	61593048	+	intron-Distal	4.20539	3.86417	HepG2	PRPF4
chr8	61592511	61592605	+	intron-Distal	3.65777	5.81451	K562	CSTF2T
chr8	61763379	61763450	+	intron-Distal,intron-Proximal	4.70666	4.79708	HepG2	U2AF2
chr8	61593012	61593089	+	intron-Distal	4.79441	4.97583	HepG2	GTF2F1
chr8	61758952	61759078	+	intron-Distal	3.82389	3.16095	HepG2	U2AF2
chr8	61598617	61598681	+	intron-Distal	5.54705	10.04692	HepG2	HNRNPM
chr8	61615351	61615461	+	intron-Distal	4.35886	4.31871	HepG2	HNRNPM
chr8	61726173	61726242	+	intron-Distal	4.56972	5.60990	HepG2	KHSRP
chr8	61592483	61592507	+	intron-Distal	3.84802	5.16644	HepG2	FAM120A
chr8	61592995	61593071	+	intron-Distal	5.09673	16.29788	HepG2	CSTF2T
chr8	61671946	61672008	+	intron-Distal	3.90145	5.12778	HepG2	PCBP2
chr8	61677809	61677912	+	intron-Distal	3.43316	4.30735	HepG2	HNRNPL
chr8	61592566	61592604	+	intron-Distal	3.44944	4.35063	HepG2	PRPF4
chr8	61704219	61704319	+	intron-Distal	4.04777	6.55430	HepG2	RBFOX2
chr8	61593002	61593064	+	intron-Distal	3.38063	3.77708	K562	GTF2F1
chr8	61614453	61614538	+	intron-Distal	4.21938	4.12480	HepG2	HNRNPM
chr8	61592459	61592509	+	intron-Distal	3.43245	9.22005	HepG2	CSTF2T
chr8	61591779	61591844	+	intron-Distal	4.14079	12.15962	HepG2	CSTF2T
chr8	61592005	61592062	+	intron-Distal	3.83096	4.66021	K562	GEMIN5
chr8	61725709	61725790	+	intron-Distal	4.70445	6.41805	HepG2	KHSRP
chr8	61592010	61592070	+	intron-Distal	3.84093	6.09306	K562	NONO
chr8	61672042	61672126	+	intron-Distal	5.02667	13.68052	HepG2	PCBP2
chr8	61591845	61591859	+	intron-Distal	3.90695	3.06140	HepG2	NKRF
chr8	61592536	61592582	+	intron-Distal	3.55287	5.14745	HepG2	XRN2
chr8	61592009	61592068	+	intron-Distal	4.48910	4.75311	K562	CSTF2T
chr8	61592978	61593063	+	intron-Distal	5.15053	24.23218	HepG2	FAM120A
chr8	61592355	61592459	+	intron-Distal,intron-Proximal	4.52389	21.82571	HepG2	CSTF2T
chr8	61731143	61731220	+	intron-Distal	5.89692	13.99567	HepG2	QKI
chr8	61672022	61672121	+	intron-Distal	4.07292	6.24904	HepG2	PTBP1
chr8	61592369	61592443	+	intron-Distal,intron-Proximal	3.11403	6.79415	HepG2	FAM120A
chr8	61597948	61598022	+	intron-Distal	4.14671	6.92280	HepG2	HNRNPM
chr8	61591997	61592060	+	intron-Distal	3.13860	5.88293	HepG2	XRN2
chr8	61680044	61680140	+	intron-Distal	4.94383	6.79824	HepG2	HNRNPM
chr8	61598025	61598111	+	intron-Distal	5.05745	4.97153	HepG2	EXOSC5
chr8	61634065	61634135	+	intron-Distal	4.21697	3.97018	HepG2	HNRNPM
chr8	61598330	61598360	+	intron-Distal	3.03396	4.23271	HepG2	HNRNPM
chr8	61672068	61672125	+	intron-Distal	4.51957	4.30178	K562	PTBP1
chr8	61592006	61592061	+	intron-Distal	4.11812	11.25734	HepG2	FAM120A
chr8	61592530	61592615	+	intron-Distal	4.17587	12.03833	HepG2	FAM120A
chr8	61592547	61592606	+	intron-Distal	3.87068	3.57432	K562	NONO
chr8	61704323	61704383	+	intron-Distal	4.46803	4.70434	HepG2	RBFOX2
chr8	61606846	61606997	+	intron-Distal	3.57107	6.09178	HepG2	QKI
chr8	61726242	61726318	+	intron-Distal	3.28152	4.39362	HepG2	KHSRP
chr8	61591999	61592084	+	intron-Distal	3.33728	10.62388	HepG2	NKRF
chr8	61591753	61591841	+	intron-Distal	3.05883	3.81185	HepG2	FASTKD2
chr8	61598056	61598121	+	intron-Distal	4.68162	4.78128	K562	HNRNPM
chr8	61591991	61592066	+	intron-Distal	3.81970	10.04312	HepG2	PRPF4
chr8	61598681	61598715	+	intron-Distal	4.66961	6.19745	HepG2	HNRNPM
chr8	61591782	61591834	+	intron-Distal	3.41592	6.67956	HepG2	FAM120A
chr8	61598786	61598819	+	intron-Distal	4.46209	4.66899	HepG2	HNRNPM
chr8	61725568	61725652	+	intron-Distal	3.08231	3.28806	K562	KHSRP
chr8	61725852	61725944	+	intron-Distal	4.04867	6.32636	HepG2	U2AF2
chr8	61678652	61678747	+	intron-Distal	4.36900	3.80778	HepG2	QKI
chr8	61605641	61605722	+	intron-Distal	4.78630	4.82195	HepG2	XPO5
chr8	61723887	61723983	+	intron-Distal	3.73204	5.57156	HepG2	QKI
chr8	61592001	61592065	+	intron-Distal	3.43066	3.41847	HepG2	GTF2F1
chr8	61592529	61592621	+	intron-Distal	4.32424	4.42197	K562	EWSR1
chr8	61754634	61754743	+	intron-Distal,intron-Proximal	4.26751	3.73609	HepG2	KHSRP
chr8	61592006	61592072	+	intron-Distal	6.31833	22.77076	HepG2	CSTF2T
chr8	61592533	61592592	+	intron-Distal	4.08879	3.22073	HepG2	KHSRP
chr8	61598034	61598111	+	intron-Distal	5.33057	19.52065	HepG2	HNRNPM
chr8	61592509	61592609	+	intron-Distal	3.88556	24.11079	HepG2	CSTF2T
chr8	61616800	61616880	+	intron-Distal	4.33884	3.55064	HepG2	SFPQ
chr8	61704195	61704344	+	intron-Distal	3.96316	3.80506	K562	RBFOX2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CHD7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CHD7 is not available on ENCORE database.
115 RBPs can affect the levels of CHD7.

The Knockdown/knockout RNA-Seq assay for CHD7 is not available on ENCORE database.

115 RBPs can affect the gene expression of CHD7 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CHD7	ENSG00000171316.7	2654.50330	1947.70570	0.44660	10.25500	9.23850	HepG2	ACO1
CHD7	ENSG00000171316.7	2048.50270	1563.34570	0.38980	2.57120	2.05740	HepG2	AKAP1
CHD7	ENSG00000171316.7	1138.94530	1539.40450	-0.43470	2.69450	1.77180	HepG2	BCCIP
CHD7	ENSG00000171316.7	1664.42230	1228.92210	0.43750	3.64090	2.76280	HepG2	CIRBP
CHD7	ENSG00000171316.7	2697.74740	1923.94540	0.48760	9.84510	8.77450	HepG2	CELF1
CHD7	ENSG00000171316.7	1954.44690	1497.47310	0.38410	2.85650	2.22100	HepG2	DDX3X
CHD7	ENSG00000171316.7	1436.58770	1863.42970	-0.37530	5.59890	4.69740	HepG2	DKC1
CHD7	ENSG00000171316.7	1167.46350	1534.19590	-0.39410	5.08830	4.16070	HepG2	DNAJC21
CHD7	ENSG00000171316.7	2325.11180	1869.23460	0.31480	3.00060	1.77580	HepG2	EIF2S2
CHD7	ENSG00000171316.7	2354.54980	1330.66750	0.82320	7.92900	6.79380	HepG2	EIF4B
CHD7	ENSG00000171316.7	2506.49000	3513.20210	-0.48710	11.32430	10.23950	HepG2	ETF1
CHD7	ENSG00000171316.7	1488.69230	898.34660	0.72860	10.39620	8.92140	HepG2	FUBP3
CHD7	ENSG00000171316.7	1836.53420	1379.04710	0.41320	3.25770	2.50950	HepG2	FXR1
CHD7	ENSG00000171316.7	1865.13700	1279.09960	0.54410	4.91200	4.03700	HepG2	G3BP1
CHD7	ENSG00000171316.7	2071.47710	1358.14880	0.60890	6.83900	5.42630	HepG2	G3BP2
CHD7	ENSG00000171316.7	948.69750	1548.89380	-0.70720	10.12880	9.00890	HepG2	HNRNPA1
CHD7	ENSG00000171316.7	1285.48260	1722.85640	-0.42250	4.10680	3.27460	HepG2	HNRNPC
CHD7	ENSG00000171316.7	1879.33220	1295.59830	0.53650	5.82450	4.83980	HepG2	HNRNPK
CHD7	ENSG00000171316.7	1399.34840	1711.46600	-0.29050	3.70620	3.01450	HepG2	HNRNPU
CHD7	ENSG00000171316.7	1669.15000	2281.50580	-0.45090	6.00230	4.97620	HepG2	IGF2BP1
CHD7	ENSG00000171316.7	1869.29280	1300.11680	0.52380	4.90670	4.03050	HepG2	IGF2BP2
CHD7	ENSG00000171316.7	2267.82530	1220.34530	0.89390	4.04570	2.85860	HepG2	IGF2BP3
CHD7	ENSG00000171316.7	1823.65880	1307.80760	0.47960	3.22830	2.13340	HepG2	KHSRP
CHD7	ENSG00000171316.7	1478.15840	1780.45470	-0.26840	3.87800	2.67500	HepG2	KIF1C
CHD7	ENSG00000171316.7	1939.78160	1379.53000	0.49160	4.29700	3.48290	HepG2	MAGOH
CHD7	ENSG00000171316.7	2357.88250	1387.19890	0.76520	8.84190	7.76680	HepG2	MATR3
CHD7	ENSG00000171316.7	2556.92060	1419.83270	0.84860	11.61470	10.36030	HepG2	NCBP2
CHD7	ENSG00000171316.7	1898.68260	1264.25870	0.58660	5.88870	4.84800	HepG2	PABPC4
CHD7	ENSG00000171316.7	2041.76920	1694.06040	0.26920	3.31150	2.39270	HepG2	PARN
CHD7	ENSG00000171316.7	2270.00240	1264.57320	0.84390	26.58790	25.03030	HepG2	PCBP1
CHD7	ENSG00000171316.7	2087.68310	1286.73570	0.69810	17.07380	15.93710	HepG2	PTBP1
CHD7	ENSG00000171316.7	1560.77640	1958.11720	-0.32720	2.02510	1.50330	HepG2	PUF60
CHD7	ENSG00000171316.7	2331.87820	2078.65860	0.16570	2.16870	1.63060	HepG2	PUM1
CHD7	ENSG00000171316.7	2526.58870	1393.59820	0.85830	21.66490	20.15900	HepG2	QKI
CHD7	ENSG00000171316.7	2575.17850	1739.36840	0.56600	3.11430	2.36920	HepG2	RAVER1
CHD7	ENSG00000171316.7	3406.55590	2936.37990	0.21420	2.25360	1.77280	HepG2	RBM22
CHD7	ENSG00000171316.7	2078.16600	1264.76800	0.71630	12.24410	10.88700	HepG2	RBM25
CHD7	ENSG00000171316.7	2321.48740	1432.02560	0.69690	17.84030	16.69750	HepG2	NELFE
CHD7	ENSG00000171316.7	2138.41170	1333.71490	0.68100	17.15990	15.84040	HepG2	RECQL
CHD7	ENSG00000171316.7	1348.76950	2495.81490	-0.88790	17.18380	15.76810	HepG2	RPLP0
CHD7	ENSG00000171316.7	1386.76420	1880.05430	-0.43910	2.71740	1.92570	HepG2	RPS3A
CHD7	ENSG00000171316.7	2319.80240	1339.68460	0.79200	23.15560	21.72690	HepG2	SF3B4
CHD7	ENSG00000171316.7	2394.12000	1877.59230	0.35050	7.12460	6.08240	HepG2	SLBP
CHD7	ENSG00000171316.7	4236.76530	3316.52070	0.35320	8.01830	7.28770	HepG2	SRFBP1
CHD7	ENSG00000171316.7	2474.85430	1398.32980	0.82350	27.03670	25.89170	HepG2	SRSF1
CHD7	ENSG00000171316.7	2705.89950	1933.39240	0.48490	10.83960	9.71150	HepG2	SRSF5
CHD7	ENSG00000171316.7	1823.79870	2276.27710	-0.31970	4.66800	3.79930	HepG2	SRSF7
CHD7	ENSG00000171316.7	1930.24380	1137.60640	0.76270	22.12650	20.83920	HepG2	SRSF9
CHD7	ENSG00000171316.7	2016.01570	2879.50360	-0.51430	12.78380	11.84060	HepG2	SSB
CHD7	ENSG00000171316.7	2894.04850	2198.76820	0.39630	9.18180	8.16040	HepG2	SUCLG1
CHD7	ENSG00000171316.7	1827.54200	1256.84310	0.54000	8.97840	8.06220	HepG2	TAF15
CHD7	ENSG00000171316.7	1760.30010	1154.89970	0.60800	9.30290	7.78700	HepG2	TIA1
CHD7	ENSG00000171316.7	1045.38420	1663.01510	-0.66980	11.55430	10.65680	HepG2	TIAL1
CHD7	ENSG00000171316.7	2381.00140	1913.04780	0.31560	3.23000	2.27870	HepG2	TUFM
CHD7	ENSG00000171316.7	3220.67580	2128.47870	0.59740	7.65470	6.61390	HepG2	U2AF1
CHD7	ENSG00000171316.7	2545.42220	2024.96410	0.32990	2.26010	1.50850	HepG2	UBE2L3
CHD7	ENSG00000171316.7	1612.90020	2546.93460	-0.65910	19.67800	18.14510	HepG2	UPF1
CHD7	ENSG00000171316.7	842.70680	1379.85110	-0.71140	5.11090	3.72210	HepG2	UPF2
CHD7	ENSG00000171316.7	2983.20330	2458.96130	0.27870	4.18740	3.47450	HepG2	UTP3
CHD7	ENSG00000171316.7	1246.80680	1683.97090	-0.43360	2.56290	1.51600	HepG2	XPO5
CHD7	ENSG00000171316.7	915.68280	1483.21840	-0.69580	7.23280	6.07300	HepG2	XRN2
CHD7	ENSG00000171316.7	1511.54400	2244.32960	-0.57030	15.78130	14.39200	HepG2	ZC3H8
CHD7	ENSG00000171316.7	1976.67960	2801.13690	-0.50290	15.28450	14.25680	HepG2	ZNF622
CHD7	ENSG00000171316.7	1934.67460	1380.61020	0.48670	5.65750	3.90090	K562	AARS
CHD7	ENSG00000171316.7	2279.61900	3568.72720	-0.64660	4.16930	2.64050	K562	ABCF1
CHD7	ENSG00000171316.7	1619.13690	2279.02610	-0.49320	10.09790	9.10300	K562	AGGF1
CHD7	ENSG00000171316.7	1914.48060	2504.20150	-0.38740	4.01010	2.77990	K562	AKAP8
CHD7	ENSG00000171316.7	1710.41920	2371.40450	-0.47140	5.53490	4.59420	K562	AKAP8L
CHD7	ENSG00000171316.7	1591.55540	2771.86090	-0.80040	13.63100	12.46920	K562	AQR
CHD7	ENSG00000171316.7	2126.91640	2488.12590	-0.22630	2.33100	1.49920	K562	ATP5C1
CHD7	ENSG00000171316.7	1189.59250	1522.49480	-0.35600	5.06640	3.75050	K562	BCLAF1
CHD7	ENSG00000171316.7	1184.50710	2008.40210	-0.76180	10.01050	8.30300	K562	BOP1
CHD7	ENSG00000171316.7	2041.69460	2723.64410	-0.41580	5.66350	3.94850	K562	CCDC124
CHD7	ENSG00000171316.7	1633.75660	2114.84430	-0.37240	4.38610	2.47150	K562	CEBPZ
CHD7	ENSG00000171316.7	2447.80690	3509.43040	-0.51970	2.91290	1.81640	K562	CNOT7
CHD7	ENSG00000171316.7	1306.20490	2135.55310	-0.70920	12.78800	11.09020	K562	CPSF6
CHD7	ENSG00000171316.7	938.45540	1155.03950	-0.29960	2.69110	1.64830	K562	CSTF2
CHD7	ENSG00000171316.7	4039.18020	4906.07020	-0.28050	3.02830	2.00910	K562	CELF1
CHD7	ENSG00000171316.7	1668.99550	2430.73120	-0.54240	10.80810	8.42420	K562	DDX21
CHD7	ENSG00000171316.7	1033.31710	1333.27870	-0.36770	4.15180	2.44940	K562	DDX6
CHD7	ENSG00000171316.7	1116.44870	1559.44570	-0.48210	4.42930	3.25720	K562	EFTUD2
CHD7	ENSG00000171316.7	1387.98050	2323.63810	-0.74340	18.85240	17.22160	K562	EIF2S2
CHD7	ENSG00000171316.7	1777.36890	1373.89550	0.37140	3.42440	2.51570	K562	EIF4A3
CHD7	ENSG00000171316.7	998.52410	1237.27060	-0.30930	2.94370	1.74200	K562	EIF4B
CHD7	ENSG00000171316.7	3370.18120	3990.50510	-0.24370	2.77760	1.83810	K562	EIF4G2
CHD7	ENSG00000171316.7	1354.06110	2564.97540	-0.92170	6.90930	5.51670	K562	FIP1L1
CHD7	ENSG00000171316.7	1387.71230	2172.78670	-0.64680	8.69670	7.13920	K562	FMR1
CHD7	ENSG00000171316.7	931.50670	1841.59450	-0.98330	15.38240	13.07010	K562	FTO
CHD7	ENSG00000171316.7	1882.15330	1428.79410	0.39750	5.39000	4.58390	K562	FXR1
CHD7	ENSG00000171316.7	1861.46880	2532.43340	-0.44410	7.15420	5.37760	K562	GLRX3
CHD7	ENSG00000171316.7	1050.51760	2038.96400	-0.95670	18.88420	16.72970	K562	GPKOW
CHD7	ENSG00000171316.7	1780.85440	3096.54630	-0.79810	16.14400	14.27030	K562	GRSF1
CHD7	ENSG00000171316.7	1467.52920	1919.23160	-0.38710	4.22320	2.89560	K562	HNRNPA1
CHD7	ENSG00000171316.7	2315.97710	3283.89800	-0.50380	3.04350	1.39550	K562	HNRNPAB
CHD7	ENSG00000171316.7	804.40190	1510.97320	-0.90950	16.25410	14.88820	K562	HNRNPC
CHD7	ENSG00000171316.7	2513.65640	3235.90390	-0.36440	4.10500	2.79140	K562	HNRNPL
CHD7	ENSG00000171316.7	1476.56080	2109.53900	-0.51470	2.70130	1.78340	K562	HNRNPM
CHD7	ENSG00000171316.7	1761.88930	3477.82840	-0.98110	7.56620	6.26650	K562	HSPD1
CHD7	ENSG00000171316.7	1722.18080	2431.75620	-0.49780	4.07280	1.83160	K562	IGF2BP1
CHD7	ENSG00000171316.7	1953.45220	2516.74230	-0.36550	4.02300	3.00350	K562	KIF1C
CHD7	ENSG00000171316.7	2711.10450	1677.58450	0.69240	12.27160	10.41100	K562	MAGOH
CHD7	ENSG00000171316.7	1924.31630	2409.06910	-0.32410	3.23710	2.04930	K562	MAK16
CHD7	ENSG00000171316.7	1192.21780	1990.24110	-0.73930	12.37000	10.44390	K562	METAP2
CHD7	ENSG00000171316.7	2797.88030	4253.57150	-0.60430	8.70830	6.76060	K562	MSI2
CHD7	ENSG00000171316.7	2185.72920	2662.52760	-0.28470	4.32790	3.33530	K562	MTPAP
CHD7	ENSG00000171316.7	1035.36060	1536.48440	-0.56950	5.50460	3.53110	K562	NONO
CHD7	ENSG00000171316.7	2165.23440	2958.28450	-0.45020	14.04050	12.54040	K562	NSUN2
CHD7	ENSG00000171316.7	1827.39740	3371.52700	-0.88360	7.33970	5.34820	K562	PABPC1
CHD7	ENSG00000171316.7	2054.34510	1492.54250	0.46080	5.13000	3.78900	K562	PCBP2
CHD7	ENSG00000171316.7	981.85080	1477.51660	-0.58960	5.66220	3.02860	K562	PES1
CHD7	ENSG00000171316.7	1454.58350	2911.48060	-1.00110	8.38090	6.76400	K562	PPIG
CHD7	ENSG00000171316.7	1120.20860	1517.51940	-0.43790	3.71160	2.84250	K562	PRPF8
CHD7	ENSG00000171316.7	1059.09220	1354.70800	-0.35520	2.73080	1.83340	K562	PSIP1
CHD7	ENSG00000171316.7	2412.64680	1629.91620	0.56570	8.87690	7.72910	K562	PTBP1
CHD7	ENSG00000171316.7	3806.34840	4630.66310	-0.28280	2.89200	1.80070	K562	PUM1
CHD7	ENSG00000171316.7	3154.78680	4537.65850	-0.52440	9.00160	7.24680	K562	PUM2
CHD7	ENSG00000171316.7	1811.95640	2351.96520	-0.37630	3.39540	2.80260	K562	PUS1
CHD7	ENSG00000171316.7	1977.24710	2291.48440	-0.21280	1.99670	1.47800	K562	RBM15
CHD7	ENSG00000171316.7	1073.97200	1551.62540	-0.53080	3.61810	2.08100	K562	RRP9
CHD7	ENSG00000171316.7	1784.21550	2919.10560	-0.71020	19.11220	17.12520	K562	SF3A3
CHD7	ENSG00000171316.7	1461.11990	1938.99480	-0.40820	3.05270	2.03040	K562	SF3B1
CHD7	ENSG00000171316.7	1640.74490	1277.68720	0.36070	3.89940	2.87940	K562	SF3B4
CHD7	ENSG00000171316.7	3666.12280	2990.68980	0.29370	6.00620	4.69190	K562	SRPK2
CHD7	ENSG00000171316.7	1912.24420	1597.91810	0.25900	2.19880	1.55980	K562	SRSF1
CHD7	ENSG00000171316.7	1746.21670	2169.15470	-0.31290	3.98730	2.56070	K562	SRSF7
CHD7	ENSG00000171316.7	2433.62490	2070.55280	0.23300	2.10810	1.39030	K562	SYNCRIP
CHD7	ENSG00000171316.7	2039.03460	2736.97110	-0.42470	8.72550	6.44020	K562	TROVE2
CHD7	ENSG00000171316.7	1644.77760	1191.12240	0.46550	3.67540	2.37660	K562	U2AF1
CHD7	ENSG00000171316.7	996.83550	1555.08190	-0.64160	7.06500	5.35370	K562	UCHL5
CHD7	ENSG00000171316.7	1944.33720	3136.73360	-0.69000	19.94880	18.22060	K562	UPF1
CHD7	ENSG00000171316.7	1960.91230	2909.95060	-0.56950	5.77750	4.05590	K562	UTP3
CHD7	ENSG00000171316.7	1918.93630	2684.00100	-0.48410	6.63950	5.24950	K562	WDR3
CHD7	ENSG00000171316.7	1118.84460	1583.47580	-0.50110	4.64590	2.92620	K562	XRN2
CHD7	ENSG00000171316.7	1876.83700	3122.68160	-0.73450	12.97770	10.96240	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CHD7 is not available on ENCORE database.

1 RBPs can affect the splicing of CHD7 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	CHD7	ENSG00000171316.7	chr8	+	61766872	61767082	61766921	61767082	61765387	61766059	0.11300	0.00244	0.01535	longer	K562	AQR
A3SS	CHD7	ENSG00000171316.7	chr8	+	61757390	61757622	61757422	61757622	61754405	61754611	0.15300	0.00005	0.00044	longer	K562	AQR
A3SS	CHD7	ENSG00000171316.7	chr8	+	61728886	61729060	61728945	61729060	61720775	61720831	0.07600	0.01747	0.08505	longer	K562	AQR
A3SS	CHD7	ENSG00000171316.7	chr8	+	61757777	61757968	61757808	61757968	61757390	61757622	0.05900	0.00171	0.01121	longer	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CHD7

General Information

Functions

Localization

Domains (AlphaFold: CHD7)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CHD7 is not avaliable on ENCORE database.

39 proteins are bound to CHD7 RNA:

eCLIP assay for CHD7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CHD7 is not available on ENCORE database.

115 RBPs can affect the gene expression of CHD7 :

The Knockdown/knockout RNA-Seq assay for CHD7 is not available on ENCORE database.

1 RBPs can affect the splicing of CHD7 :

The Knockdown/knockout RNA-Seq assay for CHD7 is not avaliable on ENCORE database.