CARHSP1

General Information

Gene Name : CARHSP1
Gene ID : ENSG00000153048.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CARHSP1)

Not Available

Antibody Validation

Bethyl Labs: A303-908A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CARHSP1	ENSG00000153048.10	15.62	23.22	19.42	ENCSR000AEF
HepG2	CARHSP1	ENSG00000153048.10	364.44	155.13	259.78	ENCSR985KAT
K562	CARHSP1	ENSG00000153048.10	62.82	27.14	44.98	ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	CARHSP1-BGKcLV26-K562	ENCSR876IJP	CARHSP1	K562	Released		ENCSR900GQL	CRISPR	KD% = 57.0,56.6
knockdown followed by RNA-seq	CARHSP1-BGHcLV27-HepG2	ENCSR974KDR	CARHSP1	HepG2	Released		ENCSR650TTU	CRISPR	KD% = 51.1,55.0

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
CARHSP1	ENCAB401VFW	A303-908A	1			Released, ENCODE4	BGHcLV27-37, Released, ENCODE4	BGKcLV26-55, Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
CARHSP1	K562	CRISPR	ENCSR876IJP	ENCSR900GQL	CARHSP1-BGKcLV26-55,CARHSP1-BGKcLV26-56	NT-BGKcLV26-1,NT-BGKcLV26-2	57.0,56.6	Released	ENCODE4
CARHSP1	HepG2	CRISPR	ENCSR974KDR	ENCSR650TTU	CARHSP1-BGHcLV27-37,CARHSP1-BGHcLV27-38	NT-BGHcLV27-1,NT-BGHcLV27-2	51.1,55.0	Released	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
CARHSP1	Product_ID: A303-908A Lot_ID: 1 Source: Bethyl Labs Target Name: CARHSP1-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CARHSP1 is not avaliable on ENCORE database.

Proteins bound to RNA

CARHSP1 RNA is bound by 45 proteins.

CanvasJS.com

eCLIP assay for CARHSP1 is not avaliable on ENCORE database.

45 proteins are bound to CARHSP1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	8952989	8953034	-	CDS,intron-Distal,intron-Proximal	5.03521	49.85189	HepG2	PRPF8
chr16	8950962	8951027	-	intron-Distal	5.64199	35.48158	HepG2	RBFOX2
chr16	8952166	8952230	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.34891	30.84197	HepG2	PRPF8
chr16	8960512	8960622	-	intron-Distal	5.03850	29.93106	HepG2	PCBP2
chr16	8950698	8950787	-	intron-Distal	5.06344	26.19618	HepG2	RBFOX2
chr16	8952989	8953007	-	intron-Distal,intron-Proximal	5.37178	23.95513	K562	AQR
chr16	8952982	8952989	-	intron-Distal,intron-Proximal	4.81201	23.79667	HepG2	PRPF8
chr16	8953007	8953022	-	intron-Distal,intron-Proximal	5.27068	22.90542	K562	AQR
chr16	8952962	8953029	-	CDS,intron-Distal,intron-Proximal	5.41187	22.82293	HepG2	AQR
chr16	8960699	8960772	-	intron-Distal	3.93089	22.75520	HepG2	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 177 entries

eCLIP assay for CARHSP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CARHSP1 is not available on ENCORE database.
109 RBPs can affect the levels of CARHSP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CARHSP1 is not available on ENCORE database.

109 RBPs can affect the gene expression of CARHSP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CARHSP1	ENSG00000153048.6	1936.30090	3721.40510	-0.94250	46.44620	45.04900	HepG2	SRFBP1
CARHSP1	ENSG00000153048.6	3297.52690	1619.76600	1.02550	31.23250	29.88160	HepG2	TIAL1
CARHSP1	ENSG00000153048.6	3654.27430	2158.44970	0.75950	29.83680	28.39800	HepG2	SRSF9
CARHSP1	ENSG00000153048.6	5280.18730	3230.93520	0.70850	28.38250	27.12820	HepG2	SSB
CARHSP1	ENSG00000153048.6	1925.78300	851.84970	1.17670	26.92960	25.27220	K562	AGGF1
CARHSP1	ENSG00000153048.6	3884.14940	2399.31780	0.69490	23.52800	22.04890	HepG2	PCBP1
CARHSP1	ENSG00000153048.6	1627.67000	856.50460	0.92620	22.24440	20.49270	K562	RBM15
CARHSP1	ENSG00000153048.6	2609.87910	1535.88330	0.76480	21.43380	19.88680	HepG2	ZC3H8
CARHSP1	ENSG00000153048.6	4833.96120	2385.64880	1.01870	19.47810	17.62760	HepG2	ASCC1
CARHSP1	ENSG00000153048.6	4138.15260	2717.04550	0.60680	18.01770	16.87140	HepG2	NELFE
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 125 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CARHSP1 is not available on ENCORE database.

2 RBPs can affect the splicing of CARHSP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	CARHSP1	ENSG00000153048.6	chr16	-	8953961	8954075			8952769	8953192	8962822	8962863	0.06100	0.00000	0.00049	included	HepG2	TIAL1
SE	CARHSP1	ENSG00000153048.6	chr16	-	8953961	8954075			8952769	8953192	8962822	8962863	0.22100	0.00018	0.05932	included	HepG2	DROSHA

Showing 1 to 2 of 2 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CARHSP1

General Information

Functions

Localization

Domains (AlphaFold: CARHSP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CARHSP1 is not avaliable on ENCORE database.

45 proteins are bound to CARHSP1 RNA:

eCLIP assay for CARHSP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CARHSP1 is not available on ENCORE database.

109 RBPs can affect the gene expression of CARHSP1 :

The Knockdown/knockout RNA-Seq assay for CARHSP1 is not available on ENCORE database.

2 RBPs can affect the splicing of CARHSP1 :

The Knockdown/knockout RNA-Seq assay for CARHSP1 is not avaliable on ENCORE database.