CARHSP1

General Information

Gene Name       : CARHSP1
Gene ID             : ENSG00000153048.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CARHSP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CARHSP1ENSG00000153048.1015.6223.2219.42ENCSR000AEF
HepG2CARHSP1ENSG00000153048.10364.44155.13259.78ENCSR985KAT
K562CARHSP1ENSG00000153048.1062.8227.1444.98ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq CARHSP1-BGKcLV26-K562ENCSR876IJPCARHSP1K562ReleasedENCSR900GQL   CRISPRKD% = 57.0,56.6
knockdown followed by RNA-seq CARHSP1-BGHcLV27-HepG2ENCSR974KDRCARHSP1HepG2ReleasedENCSR650TTU   CRISPRKD% = 51.1,55.0






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
CARHSP1ENCAB401VFWA303-908A1Released, ENCODE4BGHcLV27-37, Released, ENCODE4BGKcLV26-55, Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
CARHSP1K562CRISPRENCSR876IJPENCSR900GQLCARHSP1-BGKcLV26-55,CARHSP1-BGKcLV26-56NT-BGKcLV26-1,NT-BGKcLV26-257.0,56.6ReleasedENCODE4
CARHSP1HepG2CRISPRENCSR974KDRENCSR650TTUCARHSP1-BGHcLV27-37,CARHSP1-BGHcLV27-38NT-BGHcLV27-1,NT-BGHcLV27-251.1,55.0ReleasedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
CARHSP1Product_ID: A303-908A
Lot_ID: 1
Source: Bethyl Labs
Target Name: CARHSP1-human		 CARHSP1-HEPG2-CRISPR-A303-908A.png<br>Caption: Western blot following CRISPR against CARHSP1 in HepG2 whole cell lysate using CARHSP1 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against CARHSP1. CARHSP1 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.
 Bethyl_A303-908A_1_CARHSP1.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the CARHSP1 specific antibody, A303-908A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the CARHSP1-specific antibody, A303-908A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
 CARHSP1-K562-CRISPR-A303-908A.png<br>Caption: Western blot following CRISPR against CARHSP1 in K562 whole cell lysate using CARHSP1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against CARHSP1. CARHSP1 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.








RNA Targets

  • eCLIP assay for CARHSP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CARHSP1 RNA is bound by 45 proteins.  







eCLIP assay for CARHSP1 is not avaliable on ENCORE database.





45 proteins are bound to CARHSP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1689521648952213-3'-UTR,CDS,intron-Distal,intron-Proximal3.425216.15340HepG2AQR
chr1689471448947192-3'-UTR,intron-Distal3.091323.20150HepG2AKAP1
chr1689519478952058-3'-UTR,intron-Distal5.4024913.73067HepG2RBFOX2
chr1689479628948017-3'-UTR,intron-Distal3.774719.22071HepG2AKAP1
chr1689471068947197-3'-UTR,intron-Distal4.039696.47490HepG2UPF1
chr1689490038949053-3'-UTR,CDS,intron-Distal,intron-Proximal5.6540712.96671HepG2LARP4
chr1689488218948895-3'-UTR,intron-Distal,intron-Proximal4.990819.08640HepG2PRPF4
chr1689486068948671-3'-UTR,intron-Distal,intron-Proximal4.789295.85041HepG2AKAP1
chr1689521668952230-3'-UTR,CDS,intron-Distal,intron-Proximal4.3489130.84197HepG2PRPF8
chr1689479598948021-3'-UTR,intron-Distal3.390866.61223HepG2UPF1
chr1689531518953193-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.285206.69401K562DDX3X
chr1689475828947629-3'-UTR,intron-Distal4.263557.12652K562UPF1
chr1689485868948669-3'-UTR,intron-Distal4.503778.73365HepG2UPF1
chr1689531528953192-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.248597.41174K562YBX3
chr1689481478948254-3'-UTR,intron-Distal3.316523.70435HepG2LIN28B
chr1689483818948445-3'-UTR,intron-Distal5.9151412.42760K562UPF1
chr1689519658952127-3'-UTR,intron-Distal,intron-Proximal4.081478.36163HepG2IGF2BP1
chr1689522048952254-3'-UTR,CDS,intron-Distal,intron-Proximal3.980577.11719HepG2RPS3
chr1689483608948499-3'-UTR,intron-Distal4.1998011.29390HepG2AKAP1
chr1689519568952033-3'-UTR,intron-Distal5.183446.10540K562EIF4G2
chr1689483668948445-3'-UTR,intron-Distal4.190048.97895HepG2UPF1
chr1689489378948999-3'-UTR,intron-Distal,intron-Proximal4.002193.73331K562RBM15
chr1689487378948767-3'-UTR,intron-Distal,intron-Proximal3.892945.24353K562UPF1
chr1689520588952125-3'-UTR,intron-Distal,intron-Proximal5.417096.34754HepG2RBFOX2
chr1689488158948875-3'-UTR,intron-Distal,intron-Proximal3.021203.02835K562XRCC6
chr1689488168948938-3'-UTR,intron-Distal,intron-Proximal5.1125315.38904HepG2UPF1
chr1689479068947961-3'-UTR,intron-Distal5.1200815.33760K562UPF1
chr1689488008948892-3'-UTR,intron-Distal,intron-Proximal3.9779319.28821HepG2LARP4
chr1689471378947162-3'-UTR,intron-Distal4.982616.64872K562UPF1
chr1689519558952137-3'-UTR,intron-Distal,intron-Proximal5.3941011.58578K562TARDBP
chr1689488148948996-3'-UTR,intron-Distal,intron-Proximal3.588776.45270K562METAP2
chr1689488158948849-3'-UTR,intron-Distal,intron-Proximal4.685926.24350K562PABPC4
chr1689484458948502-3'-UTR,intron-Distal5.279458.57616HepG2UPF1
chr1689479618948016-3'-UTR,intron-Distal3.7919515.03281K562UPF1
chr1689520378952134-3'-UTR,intron-Distal,intron-Proximal4.158144.35475K562RBFOX2
chr1689488168948876-3'-UTR,intron-Distal,intron-Proximal3.903217.73077HepG2FAM120A
chr1689489728949043-3'-UTR,CDS,intron-Distal,intron-Proximal3.249227.29565HepG2RPS3
chr1689481148948201-3'-UTR,intron-Distal5.9232414.04767K562UPF1
chr1689484408948505-3'-UTR,intron-Distal3.081125.12435HepG2PRPF4
chr1689483898948440-3'-UTR,intron-Distal4.085034.10323HepG2PRPF4
chr1689479288947947-3'-UTR,intron-Distal4.095203.95192HepG2UPF1
chr1689488928949003-3'-UTR,intron-Distal,intron-Proximal4.1377322.60415HepG2LARP4
chr1689519658952035-3'-UTR,intron-Distal4.004393.89786K562RBFOX2
chr1689620538962100-5'-UTR,intron-Distal,intron-Proximal3.059383.01436K562CSTF2T
chr1689611098961168-5'-UTR,intron-Distal3.5289312.09851HepG2CSTF2T
chr1689622418962289-5'-UTR,intron-Distal,intron-Proximal3.227477.96847HepG2NKRF
chr1689624248962483-5'-UTR,intron-Distal3.502346.67956HepG2FAM120A
chr1689620548962102-5'-UTR,intron-Distal,intron-Proximal3.239273.64784K562EWSR1
chr1689620518962105-5'-UTR,intron-Distal,intron-Proximal3.2373215.36981HepG2CSTF2T
chr1689620458962136-5'-UTR,intron-Distal,intron-Proximal3.4129811.47274HepG2NKRF
chr1689619098961965-5'-UTR,intron-Distal4.089254.04290K562CSTF2T
chr1689624248962477-5'-UTR,intron-Distal3.3984110.54269HepG2CSTF2T
chr1689628228962860-5'-UTR,intron-Distal5.026405.82881K562DDX3X
chr1689622448962337-5'-UTR,intron-Distal,intron-Proximal3.049969.38951HepG2FAM120A
chr1689623968962488-5'-UTR,intron-Distal4.126299.19843HepG2XRN2
chr1689625718962658-5'-UTR,intron-Distal,intron-Proximal3.8020015.68751HepG2CSTF2T
chr1689529628953029-CDS,intron-Distal,intron-Proximal5.4118722.82293HepG2AQR
chr1689491308949184-CDS,intron-Distal,intron-Proximal3.5180612.82760HepG2LARP4
chr1689531148953134-CDS,intron-Distal,intron-Proximal3.159625.79072K562YBX3
chr1689522978952354-CDS,intron-Distal,intron-Proximal6.0379621.77166K562AQR
chr1689490538949130-CDS,intron-Distal,intron-Proximal4.0034913.79659HepG2LARP4
chr1689531348953152-CDS,intron-Distal,intron-Proximal3.285307.62417K562YBX3
chr1689522968952354-CDS,intron-Distal,intron-Proximal3.169786.01141HepG2EFTUD2
chr1689529898953034-CDS,intron-Distal,intron-Proximal5.0352149.85189HepG2PRPF8
chr1689522208952345-CDS,intron-Distal,intron-Proximal3.088514.88776HepG2PRPF4
chr1689491418949271-CDS,intron-Distal,intron-Proximal5.1164412.14514HepG2AQR
chr1689522588952408-CDS,intron-Distal,intron-Proximal5.9232221.81424HepG2AQR
chr1689530278953114-CDS,intron-Distal,intron-Proximal3.7422211.48475K562YBX3
chr1689530488953153-CDS,intron-Distal,intron-Proximal3.754924.14411K562METAP2
chr1689522928952386-CDS,intron-Distal,intron-Proximal3.8190517.17151HepG2BUD13
chr1689529308953030-CDS,intron-Distal,intron-Proximal3.335475.54603K562PRPF8
chr1689490718949134-CDS,intron-Distal,intron-Proximal4.045393.24973HepG2RPS3
chr1689522928952345-CDS,intron-Distal,intron-Proximal4.5471518.51245HepG2PRPF8
chr1689523118952382-CDS,intron-Distal,intron-Proximal3.923117.09030K562SF3B4
chr1689522058952289-CDS,intron-Distal,intron-Proximal3.9632016.01357HepG2LARP4
chr1689528948953031-CDS,intron-Distal,intron-Proximal3.217503.04831K562RBM15
chr1689613158961358-intron-Distal,intron-Proximal3.7126310.41008HepG2CSTF2T
chr1689576348957680-intron-Distal4.380344.66899HepG2HNRNPM
chr1689565338956647-intron-Distal3.028544.68303HepG2HNRNPK
chr1689613898961472-intron-Distal4.6833612.51611HepG2NKRF
chr1689609978961057-intron-Distal4.050448.79576HepG2FAM120A
chr1689610048961050-intron-Distal4.211804.75311K562CSTF2T
chr1689506988950787-intron-Distal5.0634426.19618HepG2RBFOX2
chr1689604948960546-intron-Distal3.709663.67675HepG2DDX59
chr1689578368957928-intron-Distal5.062917.51573HepG2HNRNPM
chr1689612988961336-intron-Distal,intron-Proximal4.186414.13881HepG2PRPF4
chr1689608848960936-intron-Distal3.153713.74491K562CSTF2T
chr1689564018956461-intron-Distal5.6251010.65318HepG2PCBP2
chr1689608728960969-intron-Distal4.1649412.03833HepG2FAM120A
chr1689603778960417-intron-Distal3.148567.46045HepG2CSTF2T
chr1689577208957784-intron-Distal3.043056.20207HepG2CSTF2T
chr1689612888961366-intron-Distal,intron-Proximal4.729726.12846K562EWSR1
chr1689600028960072-intron-Distal4.876955.66556HepG2FASTKD2
chr1689509618951051-intron-Distal5.414168.59541K562RBFOX2
chr1689579518958042-intron-Distal3.825654.77135HepG2HNRNPL
chr1689567218956802-intron-Distal3.215166.18982HepG2NKRF
chr1689586048958652-intron-Distal3.161566.57490HepG2CSTF2T
chr1689509648951033-intron-Distal3.890964.45240K562EIF4G2
chr1689625958962675-intron-Distal,intron-Proximal3.941716.14899HepG2PCBP2
chr1689610268961067-intron-Distal3.585954.59965HepG2PRPF4
chr1689581218958193-intron-Distal3.837573.43867K562CSTF2T
chr1689587618958851-intron-Distal4.437664.61288HepG2PRPF4
chr1689577148957786-intron-Distal3.910688.14424HepG2HNRNPM
chr1689529118952952-intron-Distal,intron-Proximal4.591628.52787K562AQR
chr1689605128960622-intron-Distal5.0385029.93106HepG2PCBP2
chr1689603318960362-intron-Distal3.680898.83513HepG2CSTF2T
chr1689612898961352-intron-Distal,intron-Proximal3.321746.42904HepG2SFPQ
chr1689587428958839-intron-Distal3.154807.15872HepG2NKRF
chr1689627388962794-intron-Distal3.448884.55636HepG2PRPF4
chr1689587588958832-intron-Distal4.183344.22598K562CSTF2T
chr1689565368956590-intron-Distal3.7513112.62249HepG2CSTF2T
chr1689608768960920-intron-Distal3.118335.17784HepG2SFPQ
chr1689613128961349-intron-Distal,intron-Proximal3.537123.94360HepG2GTF2F1
chr1689607728960796-intron-Distal3.209817.70097HepG2CSTF2T
chr1689613468961462-intron-Distal,intron-Proximal3.473185.30347HepG2RBM5
chr1689610138961061-intron-Distal4.159083.57264HepG2GTF2F1
chr1689581398958185-intron-Distal4.079153.86368HepG2HNRNPM
chr1689576618957725-intron-Distal3.615224.16791HepG2NKRF
chr1689530078953022-intron-Distal,intron-Proximal5.2706822.90542K562AQR
chr1689607098960742-intron-Distal3.808133.43867K562CSTF2T
chr1689509068950961-intron-Distal5.100338.88526HepG2RBFOX2
chr1689627668962819-intron-Distal3.833773.09957HepG2AQR
chr1689608708960964-intron-Distal4.1597521.34384HepG2CSTF2T
chr1689614048961454-intron-Distal3.054265.63673HepG2PCBP2
chr1689614008961464-intron-Distal4.1167417.32654HepG2CSTF2T
chr1689563548956400-intron-Distal3.292293.10946HepG2SFPQ
chr1689613968961455-intron-Distal3.398117.82214HepG2GTF2F1
chr1689577868957841-intron-Distal3.270376.05986HepG2CSTF2T
chr1689622898962327-intron-Distal,intron-Proximal3.8148812.22612HepG2NKRF
chr1689610098961066-intron-Distal3.285477.02883HepG2CSTF2T
chr1689608888960972-intron-Distal3.350255.87309HepG2XRN2
chr1689505768950600-intron-Distal3.827565.00859HepG2RBFOX2
chr1689609708961018-intron-Distal4.776696.58205HepG2PRPF4
chr1689509628951027-intron-Distal5.6419935.48158HepG2RBFOX2
chr1689600208960063-intron-Distal3.120225.92031HepG2CSTF2T
chr1689626078962669-intron-Distal,intron-Proximal4.747494.82919HepG2FASTKD2
chr1689587888958832-intron-Distal3.340713.23984HepG2HNRNPUL1
chr1689510278951073-intron-Distal4.9263220.75772HepG2RBFOX2
chr1689613958961458-intron-Distal3.4312711.71244HepG2FAM120A
chr1689626098962659-intron-Distal,intron-Proximal3.975853.88645HepG2FUS
chr1689606998960772-intron-Distal3.9308922.75520HepG2CSTF2T
chr1689505578950576-intron-Distal3.115344.11539HepG2RBFOX2
chr1689608918960953-intron-Distal4.815926.99833HepG2GTF2F1
chr1689626058962667-intron-Distal,intron-Proximal4.8683813.67622HepG2EFTUD2
chr1689627438962816-intron-Distal3.006903.17655HepG2NCBP2
chr1689529898953007-intron-Distal,intron-Proximal5.3717823.95513K562AQR
chr1689625828962655-intron-Distal,intron-Proximal4.724575.54639K562CSTF2T
chr1689622698962327-intron-Distal,intron-Proximal3.1650815.21158HepG2CSTF2T
chr1689570598957087-intron-Distal3.432454.69054HepG2CSTF2T
chr1689627518962802-intron-Distal3.267599.41965HepG2CSTF2T
chr1689612868961358-intron-Distal,intron-Proximal3.057513.23829HepG2FUS
chr1689581378958243-intron-Distal3.440653.61508HepG2FUS
chr1689587858958831-intron-Distal4.227833.50322HepG2CDC40
chr1689508698950906-intron-Distal3.922107.07105HepG2RBFOX2
chr1689613128961354-intron-Distal,intron-Proximal3.262214.98844HepG2FAM120A
chr1689622618962348-intron-Distal,intron-Proximal3.420284.06017HepG2DROSHA
chr1689529708953021-intron-Distal,intron-Proximal4.060209.52799HepG2BUD13
chr1689613958961454-intron-Distal4.692724.70436K562EWSR1
chr1689529368953021-intron-Distal,intron-Proximal3.916186.26812HepG2EFTUD2
chr1689613858961451-intron-Distal3.546414.96675K562TIA1
chr1689613828961454-intron-Distal,intron-Proximal3.071743.41015HepG2EIF3D
chr1689509148950975-intron-Distal3.235123.94213HepG2LIN28B
chr1689506368950678-intron-Distal3.410645.81579HepG2RBFOX2
chr1689613808961456-intron-Distal,intron-Proximal3.687558.65261K562CSTF2T
chr1689608678960959-intron-Distal3.4388411.47274HepG2NKRF
chr1689523298952393-intron-Distal,intron-Proximal4.502145.28859HepG2SF3B4
chr1689529828952989-intron-Distal,intron-Proximal4.8120123.79667HepG2PRPF8
chr1689529688952982-intron-Distal,intron-Proximal4.048988.17589HepG2PRPF8
chr1689583688958426-intron-Distal3.411833.12080HepG2XPO5
chr1689565468956595-intron-Distal3.824143.37376HepG2LSM11
chr1689622938962355-intron-Distal,intron-Proximal3.262719.96039HepG2EFTUD2
chr1689530238953028-intron-Distal,intron-Proximal5.0929320.81366K562AQR
chr1689518178951864-intron-Distal,intron-Proximal4.378373.65854HepG2RBFOX2
chr1689605098960646-intron-Distal3.312685.85078HepG2HNRNPK
chr1689608738960927-intron-Distal4.896474.14061K562DROSHA
chr1689605748960643-intron-Distal3.443997.66368HepG2CSTF2T
chr1689529188953003-intron-Distal,intron-Proximal3.6863412.39751HepG2RBM22
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CARHSP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CARHSP1 is not available on ENCORE database.

  • 109 RBPs can affect the levels of CARHSP1.  








The Knockdown/knockout RNA-Seq assay for CARHSP1 is not available on ENCORE database.





109 RBPs can affect the gene expression of CARHSP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CARHSP1ENSG00000153048.62272.891401483.958700.615004.962303.67970HepG2ADAR
CARHSP1ENSG00000153048.61681.008602883.29720-0.778409.108708.20570HepG2AKAP1
CARHSP1ENSG00000153048.63667.969102350.564200.641905.291803.86640HepG2AKAP8
CARHSP1ENSG00000153048.63430.637802713.806900.338105.189004.16770HepG2AKAP8L
CARHSP1ENSG00000153048.64833.961202385.648801.0187019.4781017.62760HepG2ASCC1
CARHSP1ENSG00000153048.63884.679403433.400600.178102.046101.43900HepG2AUH
CARHSP1ENSG00000153048.6813.028201333.76690-0.7141010.942909.56930HepG2CALR
CARHSP1ENSG00000153048.63076.312402266.542700.440604.234203.29030HepG2CIRBP
CARHSP1ENSG00000153048.61908.650402700.50950-0.5007014.0422012.78530HepG2CKAP4
CARHSP1ENSG00000153048.61705.617902514.49880-0.560003.442002.58190HepG2CNOT7
CARHSP1ENSG00000153048.62446.515201938.931900.335403.007901.85820HepG2CPSF7
CARHSP1ENSG00000153048.62469.732903098.68530-0.327303.030802.26050HepG2DAZAP1
CARHSP1ENSG00000153048.62992.782402498.180600.260504.423203.39960HepG2DDX19B
CARHSP1ENSG00000153048.61221.892702083.24580-0.7697012.7024011.37730HepG2DDX21
CARHSP1ENSG00000153048.61669.296802039.22780-0.288802.571901.69430HepG2DDX24
CARHSP1ENSG00000153048.61864.074802395.40650-0.361803.354601.92750HepG2DDX47
CARHSP1ENSG00000153048.64518.046202372.719100.9291013.7037012.45810HepG2DDX6
CARHSP1ENSG00000153048.62971.215602280.763900.381403.180602.54680HepG2EIF2S1
CARHSP1ENSG00000153048.63237.339602520.421100.361002.430101.82930HepG2EIF4A3
CARHSP1ENSG00000153048.61500.159602454.15770-0.710106.162905.16580HepG2EIF4B
CARHSP1ENSG00000153048.62395.029703057.59560-0.352403.090202.21490HepG2EIF4G1
CARHSP1ENSG00000153048.63379.880603942.19830-0.222003.374802.72040HepG2ETF1
CARHSP1ENSG00000153048.6536.39540884.73220-0.721902.725801.71700HepG2FTO
CARHSP1ENSG00000153048.64728.339902543.275200.8945015.3704013.87900HepG2FXR1
CARHSP1ENSG00000153048.63232.734102359.115500.454403.939303.15200HepG2G3BP1
CARHSP1ENSG00000153048.63578.079702504.693200.514505.623004.34210HepG2G3BP2
CARHSP1ENSG00000153048.62663.115501965.657600.438003.604902.43590HepG2GNB2L1
CARHSP1ENSG00000153048.63061.731201678.030500.8675017.2704015.68890HepG2HNRNPC
CARHSP1ENSG00000153048.62388.448701941.434400.298903.994703.14830HepG2HNRNPF
CARHSP1ENSG00000153048.63376.049702822.470600.258303.724502.95020HepG2HNRNPL
CARHSP1ENSG00000153048.61296.79960955.389800.440703.503102.80450HepG2HNRNPLL
CARHSP1ENSG00000153048.61160.616101640.37820-0.499106.371405.00810HepG2HNRNPM
CARHSP1ENSG00000153048.61281.355701666.93690-0.379505.677704.83350HepG2HNRNPU
CARHSP1ENSG00000153048.62259.722801911.748800.241202.003501.38020HepG2IGF2BP1
CARHSP1ENSG00000153048.61680.154602558.35880-0.606605.976205.07460HepG2MATR3
CARHSP1ENSG00000153048.61154.479401924.07980-0.7369012.7992011.19000HepG2MSI2
CARHSP1ENSG00000153048.63828.498602618.586000.547905.712704.81750HepG2NCBP2
CARHSP1ENSG00000153048.63667.719203072.684300.255302.881702.10320HepG2NOL12
CARHSP1ENSG00000153048.63884.149402399.317800.6949023.5280022.04890HepG2PCBP1
CARHSP1ENSG00000153048.61462.482202023.69990-0.468602.704101.67620HepG2PCBP2
CARHSP1ENSG00000153048.61756.278201486.775700.240202.314101.63330HepG2PPIL4
CARHSP1ENSG00000153048.61870.850501556.303900.265503.205202.37850HepG2PRPF4
CARHSP1ENSG00000153048.62575.192403111.65670-0.273001.992301.41730HepG2PUM2
CARHSP1ENSG00000153048.63090.400901952.280100.662504.121103.26880HepG2RAVER1
CARHSP1ENSG00000153048.63542.263002399.679700.561705.794304.85030HepG2RBM25
CARHSP1ENSG00000153048.62518.108101885.994400.416902.313901.34710HepG2RCC2
CARHSP1ENSG00000153048.64138.152602717.045500.6068018.0177016.87140HepG2NELFE
CARHSP1ENSG00000153048.63599.639702530.594100.508305.879905.02660HepG2RECQL
CARHSP1ENSG00000153048.61038.048301326.89060-0.354202.541001.94950HepG2RPS19
CARHSP1ENSG00000153048.61724.433902141.90040-0.312802.629201.84730HepG2RPS2
CARHSP1ENSG00000153048.61610.044402186.50150-0.441504.534803.14190HepG2RPS5
CARHSP1ENSG00000153048.61775.031202377.96740-0.421902.868201.53370HepG2SART3
CARHSP1ENSG00000153048.62737.973001939.192600.497603.282502.54620HepG2SF3A3
CARHSP1ENSG00000153048.62028.987401731.167100.228903.247702.55980HepG2SMN1
CARHSP1ENSG00000153048.61480.943701052.180000.493002.727701.95220HepG2SNRNP70
CARHSP1ENSG00000153048.61936.300903721.40510-0.9425046.4462045.04900HepG2SRFBP1
CARHSP1ENSG00000153048.63530.161202896.479200.285303.050702.39690HepG2SRSF5
CARHSP1ENSG00000153048.63654.274302158.449700.7595029.8368028.39800HepG2SRSF9
CARHSP1ENSG00000153048.65280.187303230.935200.7085028.3825027.12820HepG2SSB
CARHSP1ENSG00000153048.63300.936102196.814500.587404.973403.45190HepG2STIP1
CARHSP1ENSG00000153048.62192.322001605.296800.449504.810403.58670HepG2SUPT6H
CARHSP1ENSG00000153048.62537.916601749.061400.537004.020903.22850HepG2SUPV3L1
CARHSP1ENSG00000153048.61744.082901172.207700.573104.864703.59790HepG2TFIP11
CARHSP1ENSG00000153048.63297.526901619.766001.0255031.2325029.88160HepG2TIAL1
CARHSP1ENSG00000153048.62081.304701634.218400.348805.534104.78810HepG2TRIM56
CARHSP1ENSG00000153048.62249.571001601.056100.490502.476101.52990HepG2UPF2
CARHSP1ENSG00000153048.6996.164301660.36540-0.7370017.6206016.30400HepG2UTP3
CARHSP1ENSG00000153048.61450.687202147.61200-0.566003.948102.68270HepG2XRCC6
CARHSP1ENSG00000153048.62760.485601721.765400.680907.327606.16150HepG2XRN2
CARHSP1ENSG00000153048.62609.879101535.883300.7648021.4338019.88680HepG2ZC3H8
CARHSP1ENSG00000153048.61581.215701891.41350-0.258402.614902.07930HepG2ZNF622
CARHSP1ENSG00000153048.61925.78300851.849701.1767026.9296025.27220K562AGGF1
CARHSP1ENSG00000153048.61532.14620936.107800.710708.122006.19220K562AKAP8
CARHSP1ENSG00000153048.61708.75780886.401400.946804.476903.63860K562AKAP8L
CARHSP1ENSG00000153048.61069.314701470.18350-0.459303.815503.14840K562AQR
CARHSP1ENSG00000153048.61027.35100809.140300.344403.440901.93960K562BCCIP
CARHSP1ENSG00000153048.6541.38460377.921300.518503.253702.30510K562BOP1
CARHSP1ENSG00000153048.61008.08540826.531200.286402.664902.02340K562DDX47
CARHSP1ENSG00000153048.61036.71340671.113000.627304.609102.91810K562EEF2
CARHSP1ENSG00000153048.61205.76690888.821000.439905.434004.47600K562EIF2S2
CARHSP1ENSG00000153048.6957.89920694.183500.464502.983501.90560K562EIF3D
CARHSP1ENSG00000153048.6740.26500517.921700.515204.950103.90110K562EIF3G
CARHSP1ENSG00000153048.6960.53820545.391500.816507.272205.83560K562FIP1L1
CARHSP1ENSG00000153048.6354.81980515.98300-0.540203.270802.02610K562FKBP4
CARHSP1ENSG00000153048.6993.04320682.875800.540105.668003.52020K562G3BP1
CARHSP1ENSG00000153048.6272.06380501.72760-0.883006.469705.28720K562G3BP2
CARHSP1ENSG00000153048.61522.412101184.345900.362203.173502.36680K562GRSF1
CARHSP1ENSG00000153048.61294.853701043.846400.310802.656401.60490K562HNRNPA1
CARHSP1ENSG00000153048.61177.76580529.278301.153907.123504.84190K562HNRNPA2B1
CARHSP1ENSG00000153048.61046.96180593.601300.8185011.2587010.12350K562HNRNPC
CARHSP1ENSG00000153048.6693.71120530.265900.387502.596801.49520K562HNRNPF
CARHSP1ENSG00000153048.61169.25890739.350300.661206.793805.55640K562HSPD1
CARHSP1ENSG00000153048.61002.96040714.528200.489103.272402.12320K562IGF2BP2
CARHSP1ENSG00000153048.61338.11630940.647200.508405.710804.42830K562KIF1C
CARHSP1ENSG00000153048.61290.58040900.468400.519205.416703.73730K562MAK16
CARHSP1ENSG00000153048.61327.781701053.768900.333402.962802.01300K562MBNL1
CARHSP1ENSG00000153048.61001.70430723.704500.468906.183105.01460K562MTPAP
CARHSP1ENSG00000153048.6975.36300738.619700.401002.222501.45240K562NAA15
CARHSP1ENSG00000153048.6985.50850804.066300.293503.200402.40220K562NSUN2
CARHSP1ENSG00000153048.61339.25760462.764901.5330012.120009.54160K562PABPN1
CARHSP1ENSG00000153048.61013.75510619.214600.711107.293505.83580K562PPIG
CARHSP1ENSG00000153048.61166.35670549.975801.084505.793803.44670K562PPP1R8
CARHSP1ENSG00000153048.61106.89530729.321200.601807.662706.59390K562PTBP1
CARHSP1ENSG00000153048.62201.48770878.972601.3245014.2547013.06450K562PUS1
CARHSP1ENSG00000153048.61627.67000856.504600.9262022.2444020.49270K562RBM15
CARHSP1ENSG00000153048.6647.39260475.715900.444403.195101.75830K562RBM25
CARHSP1ENSG00000153048.61087.53010645.094600.753405.497303.62820K562RRP9
CARHSP1ENSG00000153048.6794.33650423.092900.908702.655001.48780K562SF1
CARHSP1ENSG00000153048.61029.84030793.459300.376104.107303.12530K562SF3A3
CARHSP1ENSG00000153048.61111.00500515.626101.107405.699403.49440K562SFPQ
CARHSP1ENSG00000153048.6843.63360486.078900.795303.128401.79160K562SNRNP200
CARHSP1ENSG00000153048.6906.98520715.011100.343002.534501.85280K562SRSF1
CARHSP1ENSG00000153048.6893.79850675.356200.404203.037401.92650K562SRSF5
CARHSP1ENSG00000153048.61220.96190581.301101.070603.126901.57850K562SUPT6H
CARHSP1ENSG00000153048.6963.74740610.843000.657805.730704.23140K562SUPV3L1
CARHSP1ENSG00000153048.6973.02290723.566400.427203.243402.47740K562TARDBP
CARHSP1ENSG00000153048.6796.22500556.863600.515803.775801.81360K562TFIP11
CARHSP1ENSG00000153048.6906.25410697.980200.376602.370501.62000K562TIA1
CARHSP1ENSG00000153048.6708.95840511.930900.469702.984302.00860K562TIAL1
CARHSP1ENSG00000153048.61315.949201102.158900.255702.628301.39560K562TROVE2
CARHSP1ENSG00000153048.61147.70340852.571300.428805.915004.90970K562UPF1
CARHSP1ENSG00000153048.6982.42050729.513900.429303.965002.91120K562WDR3
CARHSP1ENSG00000153048.6952.11920758.640300.327603.624902.66500K562WDR43
CARHSP1ENSG00000153048.6886.40550658.407900.428903.000401.72230K562XRN2
CARHSP1ENSG00000153048.62179.028401656.083100.395804.060802.98150K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CARHSP1 is not available on ENCORE database.





2 RBPs can affect the splicing of CARHSP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECARHSP1ENSG00000153048.6chr16-8953961895407589527698953192896282289628630.061000.000000.00049includedHepG2TIAL1
SECARHSP1ENSG00000153048.6chr16-8953961895407589527698953192896282289628630.221000.000180.05932includedHepG2DROSHA

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CARHSP1 is not avaliable on ENCORE database.