ABCA1

General Information

Gene Name       : ABCA1
Gene ID             : ENSG00000165029.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ABCA1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ABCA1ENSG00000165029.150.100.130.12ENCSR000AEF
HepG2ABCA1ENSG00000165029.1518.4722.9020.68ENCSR985KAT
K562ABCA1ENSG00000165029.150.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ABCA1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ABCA1 RNA is bound by 38 proteins.  







eCLIP assay for ABCA1 is not avaliable on ENCORE database.





38 proteins are bound to ABCA1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9107546490107546529-3'-UTR,intron-Distal3.256608.07199HepG2BCLAF1
chr9107651384107651441-3'-UTR,CDS,intron-Distal3.137025.89967HepG2UCHL5
chr9107651453107651491-3'-UTR,CDS,intron-Distal,intron-Proximal3.561993.67894HepG2AQR
chr9107543707107543816-3'-UTR,intron-Distal3.916327.17500HepG2FUBP3
chr9107546040107546132-3'-UTR,intron-Distal3.677799.25997HepG2LIN28B
chr9107543574107543658-3'-UTR,intron-Distal3.969537.34677HepG2FUBP3
chr9107651395107651431-3'-UTR,CDS,intron-Distal3.143795.09491HepG2EIF3H
chr9107545669107545735-3'-UTR,intron-Distal4.628766.23064HepG2UPF1
chr9107543314107543387-3'-UTR,intron-Distal4.616909.83252HepG2FUBP3
chr9107651388107651439-3'-UTR,CDS,intron-Distal3.0590013.08513HepG2BCLAF1
chr9107646800107646844-3'-UTR,CDS,intron-Distal3.517038.57308HepG2BUD13
chr9107651386107651440-3'-UTR,CDS,intron-Distal3.1964510.03769HepG2PPIG
chr9107690320107690424-5'-UTR,intron-Distal,intron-Proximal3.7617122.36087HepG2DDX3X
chr9107690250107690306-5'-UTR,intron-Distal3.859119.39478HepG2DDX3X
chr9107690332107690383-5'-UTR,intron-Distal4.4434410.37430HepG2NCBP2
chr9107666004107666058-5'-UTR,intron-Distal,intron-Proximal3.059365.79202HepG2U2AF2
chr9107666019107666038-5'-UTR,intron-Distal3.075724.24993HepG2PPIG
chr9107690383107690436-5'-UTR,intron-Distal,intron-Proximal3.795356.60593HepG2NCBP2
chr9107665989107666050-5'-UTR,intron-Distal3.449305.44438HepG2DDX3X
chr9107583739107583771-CDS,intron-Distal3.406515.90680HepG2PPIG
chr9107582212107582258-CDS,intron-Distal3.815999.28015HepG2GRWD1
chr9107593962107594001-CDS,intron-Distal4.0473710.37952HepG2GRWD1
chr9107550301107550329-CDS,intron-Distal4.086475.48415HepG2EIF3H
chr9107564334107564387-CDS,intron-Distal,intron-Proximal3.173315.46673HepG2FXR2
chr9107550814107550844-CDS,intron-Distal3.4716410.92329HepG2BCLAF1
chr9107602773107602875-CDS,intron-Distal,intron-Proximal4.9604418.31666HepG2PCBP2
chr9107550727107550735-CDS,intron-Distal4.259398.79898HepG2BCLAF1
chr9107558553107558616-CDS,intron-Distal,intron-Proximal3.399425.76569HepG2PRPF8
chr9107564366107564407-CDS,intron-Distal3.2321812.35960HepG2BCLAF1
chr9107565538107565612-CDS,intron-Distal,intron-Proximal4.8341510.73647HepG2AQR
chr9107584792107584831-CDS,intron-Distal3.147444.42661HepG2PPIG
chr9107560731107560809-CDS,intron-Distal4.078219.07128HepG2LIN28B
chr9107580954107581002-CDS,intron-Distal3.284268.31208HepG2PPIG
chr9107581022107581095-CDS,intron-Distal4.614027.73225HepG2YBX3
chr9107576484107576510-CDS,intron-Distal3.553963.10693HepG2UCHL5
chr9107599261107599296-CDS,intron-Distal3.733227.52043HepG2GRWD1
chr9107620831107620893-CDS,intron-Distal3.7037021.99055HepG2BCLAF1
chr9107548662107548696-CDS,intron-Distal,intron-Proximal3.698955.23469HepG2AQR
chr9107581973107582003-CDS,intron-Distal3.834648.40792HepG2PPIG
chr9107587926107587986-CDS,intron-Distal,intron-Proximal5.0110825.79477HepG2PRPF8
chr9107576479107576543-CDS,intron-Distal,intron-Proximal3.079767.34548HepG2BUD13
chr9107554215107554262-CDS,intron-Distal,intron-Proximal3.0590817.63549HepG2BCLAF1
chr9107584900107584925-CDS,intron-Distal3.8456011.19372HepG2BCLAF1
chr9107562848107562860-CDS,intron-Distal3.537899.56116HepG2BCLAF1
chr9107558342107558369-CDS,intron-Distal3.274994.69671HepG2PPIG
chr9107584798107584837-CDS,intron-Distal4.682396.07680HepG2LIN28B
chr9107623960107624007-CDS,intron-Distal4.8521413.81188HepG2PPIG
chr9107562837107562862-CDS,intron-Distal3.382355.26203HepG2FXR2
chr9107593940107594031-CDS,intron-Distal3.682275.54843HepG2UCHL5
chr9107554175107554233-CDS,intron-Distal,intron-Proximal3.021634.39424HepG2EFTUD2
chr9107591371107591455-CDS,intron-Distal,intron-Proximal3.166146.38973HepG2U2AF2
chr9107550289107550335-CDS,intron-Distal3.7635013.90696HepG2BCLAF1
chr9107602716107602743-CDS,intron-Distal3.357195.58370HepG2PPIG
chr9107582343107582395-CDS,intron-Distal,intron-Proximal3.150426.09708HepG2BUD13
chr9107550216107550289-CDS,intron-Distal3.4511316.68152HepG2BCLAF1
chr9107584792107584816-CDS,intron-Distal4.187478.00190HepG2GRWD1
chr9107548581107548647-CDS,intron-Distal3.3619718.26645HepG2BCLAF1
chr9107588070107588122-CDS,intron-Distal3.203804.02671HepG2UCHL5
chr9107620893107620956-CDS,intron-Distal3.4399219.06217HepG2BCLAF1
chr9107560683107560703-CDS,intron-Distal,intron-Proximal3.831587.16658HepG2PRPF8
chr9107556667107556688-CDS,intron-Distal,intron-Proximal3.5652913.63814HepG2BCLAF1
chr9107593957107594006-CDS,intron-Distal3.3768715.89269HepG2BCLAF1
chr9107594930107595009-CDS,intron-Distal3.2800014.84527HepG2BCLAF1
chr9107582156107582216-CDS,intron-Distal,intron-Proximal5.107706.26248HepG2PRPF8
chr9107593361107593428-CDS,intron-Distal,intron-Proximal3.379535.84640HepG2AQR
chr9107594855107594915-CDS,intron-Distal3.048336.56048HepG2GRWD1
chr9107582334107582397-CDS,intron-Distal,intron-Proximal4.009267.30826HepG2SF3B4
chr9107564337107564366-CDS,intron-Distal3.5876613.63205HepG2BCLAF1
chr9107593264107593335-CDS,intron-Distal,intron-Proximal3.2218816.03244HepG2BCLAF1
chr9107607757107607781-CDS,intron-Distal,intron-Proximal3.198869.11678HepG2BCLAF1
chr9107583680107583694-CDS,intron-Distal5.064365.86613HepG2PPIG
chr9107584816107584834-CDS,intron-Distal4.887937.48847HepG2GRWD1
chr9107574813107574862-CDS,intron-Distal,intron-Proximal4.3454311.83008HepG2PRPF8
chr9107562249107562309-CDS,intron-Distal,intron-Proximal3.930475.59977HepG2AQR
chr9107550152107550211-CDS,intron-Distal,intron-Proximal4.9005744.47876HepG2PRPF8
chr9107548587107548630-CDS,intron-Distal3.412125.74131HepG2PPIG
chr9107599745107599824-CDS,intron-Distal3.121895.89702HepG2LIN28B
chr9107568681107568770-CDS,intron-Distal,intron-Proximal5.682499.96618HepG2AQR
chr9107584910107584987-CDS,intron-Distal,intron-Proximal3.190997.34780HepG2BUD13
chr9107595020107595075-CDS,intron-Distal,intron-Proximal3.955576.22359HepG2BUD13
chr9107589254107589312-CDS,intron-Distal3.799199.66295HepG2GRWD1
chr9107573146107573184-CDS,intron-Distal3.409055.20984HepG2EIF3H
chr9107599751107599844-CDS,intron-Distal3.7710615.10874HepG2GRWD1
chr9107645335107645380-CDS,intron-Distal3.254047.41736HepG2GRWD1
chr9107568676107568724-CDS,intron-Distal,intron-Proximal3.009787.35930HepG2BUD13
chr9107599226107599275-CDS,intron-Distal,intron-Proximal4.315225.34978HepG2PRPF8
chr9107550199107550226-CDS,intron-Distal,intron-Proximal4.530595.29549HepG2EFTUD2
chr9107607734107607778-CDS,intron-Distal,intron-Proximal3.544077.53508HepG2BUD13
chr9107589189107589251-CDS,intron-Distal,intron-Proximal4.7925412.49465HepG2PRPF8
chr9107565553107565591-CDS,intron-Distal,intron-Proximal4.979045.93840HepG2PRPF8
chr9107555579107555618-CDS,intron-Distal,intron-Proximal3.715044.57180HepG2AQR
chr9107586842107586856-CDS,intron-Distal3.821644.96634HepG2PPIG
chr9107580880107580955-CDS,intron-Distal,intron-Proximal4.0646926.56618HepG2EFTUD2
chr9107593330107593382-CDS,intron-Distal,intron-Proximal3.341584.35063HepG2PRPF4
chr9107550211107550242-CDS,intron-Distal4.5134536.82472HepG2PRPF8
chr9107599266107599302-CDS,intron-Distal3.321865.77812HepG2EIF3H
chr9107566927107566959-CDS,intron-Distal3.068544.43988HepG2GRWD1
chr9107593255107593289-CDS,intron-Distal,intron-Proximal4.0270510.16718HepG2GRWD1
chr9107555452107555472-CDS,intron-Distal3.019583.41015HepG2EIF3D
chr9107576468107576512-CDS,intron-Distal3.003758.97576HepG2PPIG
chr9107581886107581937-CDS,intron-Distal3.006976.69553HepG2PPIG
chr9107580969107581007-CDS,intron-Distal3.796823.68689HepG2UCHL5
chr9107588056107588165-CDS,intron-Distal3.420226.80355HepG2SRSF1
chr9107553292107553308-CDS,intron-Distal4.7867817.34901HepG2BCLAF1
chr9107591301107591370-CDS,intron-Distal4.238205.03317HepG2UCHL5
chr9107553211107553263-CDS,intron-Distal3.5418015.83723HepG2BCLAF1
chr9107599658107599711-CDS,intron-Distal,intron-Proximal3.594615.37660HepG2PRPF8
chr9107582211107582221-CDS,intron-Distal3.670298.50755HepG2BCLAF1
chr9107554214107554255-CDS,intron-Distal,intron-Proximal3.127508.80132HepG2PPIG
chr9107599320107599357-CDS,intron-Distal4.219218.24591HepG2GRWD1
chr9107620861107620898-CDS,intron-Distal3.695559.28118HepG2GRWD1
chr9107582328107582398-CDS,intron-Distal,intron-Proximal4.244497.26476HepG2AQR
chr9107602712107602751-CDS,intron-Distal3.787837.52043HepG2GRWD1
chr9107578567107578690-CDS,intron-Distal,intron-Proximal3.8204911.56965HepG2AQR
chr9107550252107550299-CDS,intron-Distal3.563635.26203HepG2FXR2
chr9107562800107562840-CDS,intron-Distal3.9804710.10467HepG2BCLAF1
chr9107574933107574988-CDS,intron-Distal3.257687.66537HepG2GRWD1
chr9107581109107581156-CDS,intron-Distal3.105328.76705HepG2BUD13
chr9107594854107594930-CDS,intron-Distal,intron-Proximal3.5081623.90066HepG2BCLAF1
chr9107593336107593417-CDS,intron-Distal,intron-Proximal3.3682318.45980HepG2BUD13
chr9107602656107602702-CDS,intron-Distal3.410576.70485HepG2GRWD1
chr9107620852107620954-CDS,intron-Distal3.557698.85465HepG2LIN28B
chr9107599709107599722-CDS,intron-Distal3.168495.87166HepG2GRWD1
chr9107584932107584940-CDS,intron-Distal3.482154.48818HepG2GRWD1
chr9107620765107620819-CDS,intron-Distal,intron-Proximal4.397497.87148HepG2PRPF8
chr9107576682107576760-CDS,intron-Distal,intron-Proximal3.2252514.58904HepG2BUD13
chr9107554255107554280-CDS,intron-Distal,intron-Proximal3.027115.60859HepG2PPIG
chr9107553209107553257-CDS,intron-Distal3.759128.19229HepG2LIN28B
chr9107578545107578608-CDS,intron-Distal3.5794011.58875HepG2PPIG
chr9107562753107562818-CDS,intron-Distal,intron-Proximal4.840548.11807HepG2PRPF8
chr9107555066107555142-CDS,intron-Distal,intron-Proximal3.912048.07615HepG2FXR2
chr9107602522107602567-CDS,intron-Distal,intron-Proximal3.039796.40992HepG2AQR
chr9107553263107553292-CDS,intron-Distal3.5085311.20660HepG2BCLAF1
chr9107620835107620861-CDS,intron-Distal3.633689.28118HepG2GRWD1
chr9107584845107584893-CDS,intron-Distal3.112257.38162HepG2PPIG
chr9107602520107602567-CDS,intron-Distal,intron-Proximal3.826583.86479HepG2PRPF8
chr9107580879107580950-CDS,intron-Distal,intron-Proximal3.4963313.00209HepG2PRPF8
chr9107593292107593372-CDS,intron-Distal,intron-Proximal3.149683.68881HepG2SRSF1
chr9107599668107599710-CDS,intron-Distal,intron-Proximal4.380709.86309HepG2AQR
chr9107620797107620835-CDS,intron-Distal,intron-Proximal3.230687.22448HepG2GRWD1
chr9107562100107562125-CDS,intron-Distal3.023904.94718HepG2PPIG
chr9107602772107602867-CDS,intron-Distal,intron-Proximal3.6054012.93360HepG2U2AF2
chr9107591144107591233-CDS,intron-Distal,intron-Proximal3.9692811.13470HepG2PRPF8
chr9107602561107602622-CDS,intron-Distal3.255265.68803HepG2GRWD1
chr9107599265107599327-CDS,intron-Distal3.264238.75706HepG2PPIG
chr9107583759107583797-CDS,intron-Distal,intron-Proximal4.443474.28193HepG2AQR
chr9107607758107607773-CDS,intron-Distal3.772785.35682HepG2GRWD1
chr9107584784107584824-CDS,intron-Distal3.432077.99874HepG2BUD13
chr9107581013107581086-CDS,intron-Distal3.319907.77508HepG2GRWD1
chr9107576658107576750-CDS,intron-Distal,intron-Proximal3.100035.94420HepG2PRPF8
chr9107566907107566953-CDS,intron-Distal3.756276.53375HepG2AQR
chr9107584923107584946-CDS,intron-Distal3.728777.26626HepG2PPIG
chr9107578851107578916-intron-Distal5.5407711.50340HepG2PCBP2
chr9107586884107586939-intron-Distal,intron-Proximal4.410884.10415HepG2RBM5
chr9107633852107633928-intron-Distal5.2514417.36731HepG2PTBP1
chr9107641631107641705-intron-Distal3.942833.30440HepG2QKI
chr9107631233107631341-intron-Distal3.254945.28181HepG2MATR3
chr9107579546107579596-intron-Distal,intron-Proximal3.807167.59371HepG2EFTUD2
chr9107580815107580852-intron-Distal,intron-Proximal3.832363.71036HepG2RBM22
chr9107583800107583838-intron-Distal,intron-Proximal4.810729.84788HepG2SF3A3
chr9107578841107578925-intron-Distal3.809566.29348HepG2HNRNPK
chr9107651664107651759-intron-Distal3.5131610.13621HepG2BCLAF1
chr9107590197107590258-intron-Distal3.523064.58716HepG2QKI
chr9107572879107572970-intron-Distal3.578323.51437HepG2QKI
chr9107629422107629482-intron-Distal3.284005.42643HepG2MATR3
chr9107578639107578702-intron-Distal,intron-Proximal3.2247814.86716HepG2EFTUD2
chr9107578627107578722-intron-Distal,intron-Proximal4.018945.98968HepG2SF3B4
chr9107560656107560683-intron-Distal,intron-Proximal3.541816.69747HepG2PRPF8
chr9107584349107584405-intron-Distal3.163084.04108HepG2XPO5
chr9107579398107579489-intron-Distal3.342877.92823HepG2PRPF4
chr9107633841107633921-intron-Distal5.2175012.60063HepG2MATR3
chr9107566868107566907-intron-Distal,intron-Proximal3.047763.01637HepG2AQR
chr9107645544107645621-intron-Distal3.545214.98031HepG2PRPF4
chr9107579378107579483-intron-Distal3.499604.61345HepG2FAM120A
chr9107629090107629147-intron-Distal3.346024.61989HepG2SUGP2
chr9107574789107574854-intron-Distal,intron-Proximal4.146688.86977HepG2EFTUD2
chr9107633952107634013-intron-Distal6.2231252.66593HepG2PTBP1
chr9107634013107634082-intron-Distal5.2161322.08774HepG2PTBP1
chr9107579509107579593-intron-Distal,intron-Proximal4.9401918.12830HepG2PRPF8
chr9107557847107557899-intron-Distal4.123654.10336HepG2SUGP2
chr9107585839107585962-intron-Distal3.053854.28267HepG2PTBP1
chr9107650475107650567-intron-Distal4.3193210.00670HepG2HNRNPL
chr9107629737107629794-intron-Distal4.7557411.95802HepG2HNRNPL
chr9107606635107606723-intron-Distal3.190813.00914HepG2PTBP1
chr9107579533107579605-intron-Distal,intron-Proximal3.115236.50635HepG2BUD13
chr9107645236107645307-intron-Distal,intron-Proximal4.605844.23960HepG2TIAL1
chr9107690098107690176-intron-Distal3.540153.11000HepG2HNRNPM
chr9107633978107634099-intron-Distal3.8453516.47098HepG2MATR3
chr9107599383107599430-intron-Distal,intron-Proximal5.061996.38747HepG2AQR
chr9107580676107580749-intron-Distal3.392647.36622HepG2U2AF2
chr9107579394107579500-intron-Distal4.5246134.41081HepG2EFTUD2
chr9107629210107629303-intron-Distal4.0392611.01721HepG2HNRNPL
chr9107578752107578797-intron-Distal3.823893.91876HepG2U2AF2
chr9107618607107618741-intron-Distal3.623058.92112HepG2HNRNPM
chr9107645162107645212-intron-Distal4.2269515.11296HepG2XPO5
chr9107633921107633978-intron-Distal4.3173215.24496HepG2MATR3
chr9107628299107628357-intron-Distal4.300214.60209HepG2MATR3
chr9107584652107584704-intron-Distal,intron-Proximal3.346093.55754HepG2U2AF2
chr9107628567107628625-intron-Distal3.150288.67213HepG2SUGP2
chr9107586317107586377-intron-Distal4.072793.24593HepG2XPO5
chr9107588301107588343-intron-Distal3.950973.20552HepG2KHSRP
chr9107557619107557706-intron-Distal3.221414.63410HepG2SUGP2
chr9107599377107599416-intron-Distal,intron-Proximal3.598746.86197HepG2PRPF8
chr9107584738107584777-intron-Distal,intron-Proximal5.028436.74224HepG2AQR
chr9107591442107591541-intron-Distal,intron-Proximal4.128263.01266HepG2SF3B4
chr9107574816107574855-intron-Distal,intron-Proximal3.222863.60559HepG2AQR
chr9107677607107677667-intron-Distal4.712135.94008HepG2HNRNPM
chr9107650337107650412-intron-Distal4.1955822.28632HepG2HNRNPL
chr9107579527107579593-intron-Distal,intron-Proximal3.676539.36256HepG2RBM22
chr9107590088107590166-intron-Distal3.007643.81193HepG2QKI
chr9107599381107599404-intron-Distal,intron-Proximal4.596975.01214HepG2BUD13
chr9107579692107579767-intron-Distal,intron-Proximal4.655268.03271HepG2SF3A3
chr9107594116107594172-intron-Distal,intron-Proximal3.578794.50387HepG2AQR
chr9107580809107580876-intron-Distal,intron-Proximal3.901186.78376HepG2EFTUD2
chr9107572821107572879-intron-Distal3.434623.12625HepG2QKI
chr9107579373107579431-intron-Distal3.463339.18446HepG2RBFOX2
chr9107579387107579509-intron-Distal3.6346315.70810HepG2PRPF8
chr9107633928107633952-intron-Distal5.386449.85976HepG2PTBP1
chr9107690014107690177-intron-Distal3.362089.75402HepG2EFTUD2
chr9107604990107605072-intron-Distal4.094443.85108HepG2GTF2F1
chr9107634184107634236-intron-Distal3.973256.91197HepG2MATR3
chr9107631217107631339-intron-Distal4.6989218.26606HepG2PCBP2
chr9107583811107583886-intron-Distal,intron-Proximal4.234463.48722HepG2PRPF4
chr9107651851107651951-intron-Distal3.112005.74938HepG2NCBP2
chr9107589470107589519-intron-Distal,intron-Proximal3.227574.57751HepG2U2AF2
chr9107579559107579597-intron-Distal,intron-Proximal5.118724.28193HepG2AQR
chr9107629794107629843-intron-Distal3.738788.68938HepG2HNRNPL
chr9107579431107579510-intron-Distal4.5349617.47587HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ABCA1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ABCA1 is not available on ENCORE database.

  • 112 RBPs can affect the levels of ABCA1.  








The Knockdown/knockout RNA-Seq assay for ABCA1 is not available on ENCORE database.





112 RBPs can affect the gene expression of ABCA1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ABCA1ENSG00000165029.112804.352403572.54340-0.349303.564902.35490HepG2AATF
ABCA1ENSG00000165029.113525.556504493.84530-0.350103.124502.12160HepG2ABCF1
ABCA1ENSG00000165029.112353.559407926.79280-1.7519030.9163029.38040HepG2AKAP1
ABCA1ENSG00000165029.113226.920504855.54750-0.5895017.9387016.22070HepG2AKAP8L
ABCA1ENSG00000165029.117848.733605744.259700.4502012.2056010.94230HepG2AUH
ABCA1ENSG00000165029.111194.856203419.36260-1.5169031.1278027.86680HepG2BCCIP
ABCA1ENSG00000165029.117444.303802971.360901.3249031.5490029.08830HepG2BCLAF1
ABCA1ENSG00000165029.114774.467202880.157800.7291013.3131012.13610HepG2BOP1
ABCA1ENSG00000165029.114312.140203366.440000.357103.811302.37500HepG2BUD13
ABCA1ENSG00000165029.115276.530003225.900800.7098017.0747015.45820HepG2CALR
ABCA1ENSG00000165029.1112891.023406231.397201.0486023.7939021.82310HepG2CIRBP
ABCA1ENSG00000165029.115390.986104831.728300.157902.424301.79390HepG2CKAP4
ABCA1ENSG00000165029.112498.101403526.74210-0.497502.856002.07850HepG2CNOT7
ABCA1ENSG00000165029.115132.639702644.148600.9568020.4537018.80250HepG2CPSF6
ABCA1ENSG00000165029.114620.433803700.213300.320303.307002.09640HepG2CPSF7
ABCA1ENSG00000165029.114194.059503170.221100.403702.233801.32120HepG2YBX3
ABCA1ENSG00000165029.113388.570104170.32050-0.299504.590603.79960HepG2CELF1
ABCA1ENSG00000165029.115197.457504484.189200.212903.912703.05520HepG2DAZAP1
ABCA1ENSG00000165029.113839.338003174.673400.274103.683902.35450HepG2DDX1
ABCA1ENSG00000165029.115706.192803941.181100.533807.992606.90070HepG2DDX21
ABCA1ENSG00000165029.114851.194403857.095200.330703.978702.87080HepG2DDX24
ABCA1ENSG00000165029.114118.476003145.833500.388603.144101.77540HepG2DDX27
ABCA1ENSG00000165029.113577.588502547.156600.490005.384003.51100HepG2DDX28
ABCA1ENSG00000165029.114851.330103550.380000.450305.472903.69550HepG2DDX47
ABCA1ENSG00000165029.115278.504103002.622700.813805.845904.44380HepG2DDX59
ABCA1ENSG00000165029.116389.710103732.793900.7754013.6957011.67330HepG2DDX5
ABCA1ENSG00000165029.116462.079603002.434301.1058030.9746028.43620HepG2DHX30
ABCA1ENSG00000165029.116284.649404623.914100.4426011.5797010.39200HepG2DKC1
ABCA1ENSG00000165029.113477.511303085.412600.172502.442401.82360HepG2DNAJC2
ABCA1ENSG00000165029.115465.384703629.542600.590405.431803.88710HepG2AGO1
ABCA1ENSG00000165029.113771.696506270.89480-0.733508.760907.74560HepG2EIF2S1
ABCA1ENSG00000165029.114607.324003722.040100.307703.527002.32610HepG2EIF3G
ABCA1ENSG00000165029.1110401.044506930.570900.585606.310605.35000HepG2EIF4A3
ABCA1ENSG00000165029.116076.024204423.866900.4577011.9002010.40230HepG2EIF4G1
ABCA1ENSG00000165029.115501.147804237.792300.376303.851102.90120HepG2EIF4G2
ABCA1ENSG00000165029.116030.116803892.443900.631409.688407.83760HepG2ESF1
ABCA1ENSG00000165029.117490.059406594.946400.183502.812302.20730HepG2ETF1
ABCA1ENSG00000165029.115103.264003755.987200.442105.995704.41840HepG2FASTKD2
ABCA1ENSG00000165029.113657.068704537.58630-0.311202.378201.66030HepG2FIP1L1
ABCA1ENSG00000165029.114947.526302798.357000.8220012.9775010.64830HepG2FKBP4
ABCA1ENSG00000165029.115162.395402648.666600.962705.333103.92930HepG2FTO
ABCA1ENSG00000165029.115177.749803917.058900.402505.332104.25040HepG2FUBP3
ABCA1ENSG00000165029.113557.235306991.15760-0.9748014.1644012.72180HepG2FXR1
ABCA1ENSG00000165029.114429.449206486.11180-0.550205.816304.86550HepG2G3BP1
ABCA1ENSG00000165029.118787.229806884.809600.351903.230102.26520HepG2G3BP2
ABCA1ENSG00000165029.112771.015403713.01460-0.422203.637602.46370HepG2GNB2L1
ABCA1ENSG00000165029.114936.523702997.367100.719709.458108.32240HepG2GPKOW
ABCA1ENSG00000165029.112085.511903264.89540-0.646605.076203.56360HepG2GRSF1
ABCA1ENSG00000165029.115776.535504614.047100.324106.402504.99520HepG2HDGF
ABCA1ENSG00000165029.114829.189004121.064200.228703.246502.24500HepG2HNRNPA2B1
ABCA1ENSG00000165029.115704.489903495.745200.7064013.4270012.00740HepG2HNRNPC
ABCA1ENSG00000165029.114216.017103394.073300.312805.341804.38520HepG2HNRNPF
ABCA1ENSG00000165029.113293.754204084.77470-0.310507.479306.42040HepG2HNRNPL
ABCA1ENSG00000165029.116734.351102860.441001.2352031.5761029.82580HepG2HNRNPLL
ABCA1ENSG00000165029.112403.220103130.41010-0.381404.733603.52710HepG2HNRNPM
ABCA1ENSG00000165029.113919.905003472.634900.174702.069801.53610HepG2HNRNPU
ABCA1ENSG00000165029.114497.732503342.186400.428306.327205.27630HepG2IGF2BP1
ABCA1ENSG00000165029.118831.989906593.271200.421604.183103.36830HepG2IGF2BP2
ABCA1ENSG00000165029.113913.005806186.37150-0.660802.757501.77620HepG2IGF2BP3
ABCA1ENSG00000165029.113065.949703819.64780-0.317102.646501.46340HepG2LIN28B
ABCA1ENSG00000165029.1110906.167606993.591700.640908.694507.54660HepG2MAGOH
ABCA1ENSG00000165029.114421.910303671.902000.268002.437601.67620HepG2MSI2
ABCA1ENSG00000165029.116096.640702917.237201.0633012.4306010.36040HepG2MTPAP
ABCA1ENSG00000165029.114026.999103083.435000.385104.224102.72280HepG2NAA15
ABCA1ENSG00000165029.116607.863102536.314401.3814043.4613041.11110HepG2NSUN2
ABCA1ENSG00000165029.114415.278003223.708700.453702.255101.46810HepG2PABPC1
ABCA1ENSG00000165029.119656.256906411.948000.590607.288006.12730HepG2PABPC4
ABCA1ENSG00000165029.111975.017103437.33880-0.7994028.2932026.14780HepG2PARN
ABCA1ENSG00000165029.115080.797006283.80410-0.306606.290805.43270HepG2PCBP1
ABCA1ENSG00000165029.113748.644903097.316300.275303.583002.75500HepG2PPIL4
ABCA1ENSG00000165029.115317.522003142.354400.7588028.6822026.70920HepG2PRPF4
ABCA1ENSG00000165029.113663.470102593.960500.498005.659604.54880HepG2PRPF8
ABCA1ENSG00000165029.117634.147204244.562200.846802.061901.53590HepG2PUF60
ABCA1ENSG00000165029.119388.924404922.816500.9314023.1297021.67020HepG2PUS1
ABCA1ENSG00000165029.1114790.661606925.059601.0947050.3248048.30540HepG2QKI
ABCA1ENSG00000165029.118655.418206284.788000.461605.792504.84910HepG2RBM25
ABCA1ENSG00000165029.113261.257704385.88500-0.427404.090602.86630HepG2RBM27
ABCA1ENSG00000165029.115320.835907115.86240-0.419405.774705.03860HepG2NELFE
ABCA1ENSG00000165029.115190.681506627.18050-0.352508.284207.30230HepG2RECQL
ABCA1ENSG00000165029.114681.054203656.351000.356303.438402.68970HepG2RPLP0
ABCA1ENSG00000165029.116836.305704290.719800.671905.314504.02930HepG2RPS10
ABCA1ENSG00000165029.112270.119502807.58070-0.306603.019602.38140HepG2RPS19
ABCA1ENSG00000165029.113242.235004129.00760-0.348802.881801.78220HepG2RPS5
ABCA1ENSG00000165029.114661.844303092.546600.5920022.3895020.80560HepG2SAFB2
ABCA1ENSG00000165029.112136.418802817.84630-0.399403.531402.46670HepG2SERBP1
ABCA1ENSG00000165029.117752.793302831.282301.4532049.2523046.79980HepG2SF3B1
ABCA1ENSG00000165029.117095.503104069.825700.8018015.1174013.71370HepG2SLBP
ABCA1ENSG00000165029.112560.415503606.45160-0.4942015.8133014.46780HepG2SMN1
ABCA1ENSG00000165029.113066.050104450.81870-0.537703.646902.53350HepG2SMNDC1
ABCA1ENSG00000165029.114506.051503150.294100.516303.413802.54090HepG2SNRNP70
ABCA1ENSG00000165029.113485.255606225.91640-0.8370038.0219036.72200HepG2SRFBP1
ABCA1ENSG00000165029.115012.041803334.588500.5878018.1183016.61790HepG2SRSF7
ABCA1ENSG00000165029.113542.009705652.82690-0.6744026.8078025.42300HepG2SRSF9
ABCA1ENSG00000165029.119818.291605405.719000.8609048.7738047.27120HepG2SSB
ABCA1ENSG00000165029.113168.014705193.84400-0.713208.760606.66170HepG2SSRP1
ABCA1ENSG00000165029.113146.939904766.18510-0.5989023.7575022.22800HepG2SUCLG1
ABCA1ENSG00000165029.113925.582603063.546600.357604.013002.89020HepG2SUPT6H
ABCA1ENSG00000165029.118397.531106245.172800.427108.812707.90330HepG2TAF15
ABCA1ENSG00000165029.116221.672702787.994801.1580031.1574029.22130HepG2TARDBP
ABCA1ENSG00000165029.112867.083402243.360700.353802.926601.90200HepG2TFIP11
ABCA1ENSG00000165029.114499.746703374.387800.415106.448505.74470HepG2TIAL1
ABCA1ENSG00000165029.117171.360104389.212400.708209.475007.88540HepG2UBE2L3
ABCA1ENSG00000165029.11916.592701977.18610-1.1091019.2241017.26980HepG2UCHL5
ABCA1ENSG00000165029.118593.284506347.246300.4370013.6684012.33960HepG2UPF1
ABCA1ENSG00000165029.111712.179103065.10520-0.840107.429405.72520HepG2UPF2
ABCA1ENSG00000165029.113480.286403101.172200.166302.194901.58630HepG2ZC3H8
ABCA1ENSG00000165029.116181.246004364.079900.502103.739402.21810HepG2ZRANB2
ABCA1ENSG00000165029.113.1473025.76810-3.033402.665801.87190K562MTPAP
ABCA1ENSG00000165029.111.3363028.61650-4.420603.658102.81290K562NSUN2
ABCA1ENSG00000165029.110.0000026.42770-99999.999994.872502.36070K562NUFIP2
ABCA1ENSG00000165029.1117.182300.0000099999.999904.399803.45480K562PRPF8
ABCA1ENSG00000165029.114.8042028.25820-2.556302.327201.57340K562SF3A3
ABCA1ENSG00000165029.111.8236028.95310-3.988803.413802.38740K562SRPK2
ABCA1ENSG00000165029.112.0621030.34380-3.879203.325202.54180K562UPF1
ABCA1ENSG00000165029.110.5021025.96240-5.692304.197503.11120K562WDR3
ABCA1ENSG00000165029.111.5126027.01040-4.158403.519602.57310K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ABCA1 is not available on ENCORE database.





5 RBPs can affect the splicing of ABCA1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEABCA1ENSG00000165029.11chr9-1075491531075492571075485781075486711075502001075503350.058000.002790.06098includedHepG2HNRNPK
SEABCA1ENSG00000165029.11chr9-1075491531075492571075485781075486711075502001075503350.055000.000830.06091includedHepG2DDX3X
SEABCA1ENSG00000165029.11chr9-1075491531075492571075485781075486711075502001075503350.058000.002890.09235includedHepG2MATR3
SEABCA1ENSG00000165029.11chr9-1075618521075620141075607011075608791075620991075622690.098000.000010.00124includedHepG2SRSF9
SEABCA1ENSG00000165029.11chr9-1075498561075500891075491531075492571075502001075503350.055000.000720.04774includedHepG2SRSF9
A3SSABCA1ENSG00000165029.11chr9-107566906107567032107566906107567001107568521107568711-0.102000.000110.02913shorterHepG2MATR3
A3SSABCA1ENSG00000165029.11chr9-107566906107567032107566906107567001107568521107568711-0.099000.000040.04174shorterHepG2DDX3X
MXEABCA1ENSG00000165029.11chr9-107579506107579585107579612107579685107578423107578626107580943107581164-0.286000.002910.033402includedHepG2SFPQ

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ABCA1 is not avaliable on ENCORE database.