VPS18

General Information

Gene Name       : VPS18
Gene ID             : ENSG00000104142.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: VPS18)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VPS18ENSG00000104142.102.375.413.89ENCSR000AEF
HepG2VPS18ENSG00000104142.1011.404.547.97ENCSR985KAT
K562VPS18ENSG00000104142.108.566.397.47ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VPS18 is not avaliable on ENCORE database.



Proteins bound to RNA
  • VPS18 RNA is bound by 2 proteins.  







eCLIP assay for VPS18 is not avaliable on ENCORE database.





2 proteins are bound to VPS18 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr154119554641195604+3'-UTR3.362914.22460K562RBM15
chr154118671441186789+5'-UTR5.500639.29061K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VPS18 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VPS18 is not available on ENCORE database.

  • 118 RBPs can affect the levels of VPS18.  








The Knockdown/knockout RNA-Seq assay for VPS18 is not available on ENCORE database.





118 RBPs can affect the gene expression of VPS18 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VPS18ENSG00000104142.6555.28800405.893600.452002.493301.59790HepG2ABCF1
VPS18ENSG00000104142.6625.54500348.397300.8443012.9090011.79840HepG2ACO1
VPS18ENSG00000104142.61059.92230303.580701.8037018.8257017.56750HepG2AKAP1
VPS18ENSG00000104142.6580.33640350.027100.729308.943607.66420HepG2AKAP8L
VPS18ENSG00000104142.6740.11660523.543100.499305.413904.50880HepG2AUH
VPS18ENSG00000104142.6541.46220329.209200.717803.995902.87090HepG2BCCIP
VPS18ENSG00000104142.6628.18480434.627600.531303.987403.28300HepG2BOP1
VPS18ENSG00000104142.6413.33080238.630900.792405.510404.44020HepG2CIRBP
VPS18ENSG00000104142.6640.31640348.313100.8783014.4480013.17750HepG2CKAP4
VPS18ENSG00000104142.6449.17960181.563001.306708.870507.52680HepG2CNOT7
VPS18ENSG00000104142.6554.43620286.388000.9530012.8981011.70830HepG2CELF1
VPS18ENSG00000104142.6418.92060322.213700.378602.812401.97160HepG2DDX19B
VPS18ENSG00000104142.6451.96360219.340301.0429010.425809.20250HepG2DDX21
VPS18ENSG00000104142.6853.69400290.757501.5538023.7012022.05660HepG2DDX3X
VPS18ENSG00000104142.6592.28370323.703200.871504.078003.15840HepG2DDX55
VPS18ENSG00000104142.6405.34330249.884100.697802.213401.65490HepG2DDX6
VPS18ENSG00000104142.6294.95370220.802100.417602.143001.51630HepG2DNAJC21
VPS18ENSG00000104142.6329.69360218.828600.591204.680503.86800HepG2DNAJC2
VPS18ENSG00000104142.6406.81550185.390301.133708.978107.43280HepG2EEF2
VPS18ENSG00000104142.6297.20060154.511600.943606.126304.47580HepG2EFTUD2
VPS18ENSG00000104142.6423.63820240.103100.819105.722304.88770HepG2EIF2S1
VPS18ENSG00000104142.6422.02570307.952500.454502.803001.62650HepG2EIF2S2
VPS18ENSG00000104142.6308.72440150.472101.036706.719705.35910HepG2EIF3D
VPS18ENSG00000104142.6628.50140265.285801.244307.901006.82290HepG2EIF4A3
VPS18ENSG00000104142.6478.52810258.400500.888905.532904.58280HepG2EIF4B
VPS18ENSG00000104142.6531.81170340.438900.643405.583304.39270HepG2EWSR1
VPS18ENSG00000104142.6216.43760134.531200.685903.506502.17530HepG2FAM120A
VPS18ENSG00000104142.6770.74150409.868100.911003.535302.67200HepG2FIP1L1
VPS18ENSG00000104142.6460.65620288.098200.677004.082402.07520HepG2FMR1
VPS18ENSG00000104142.6196.42360399.69830-1.024903.915802.70600HepG2FTO
VPS18ENSG00000104142.6382.90520218.713700.807802.488801.42780HepG2FUS
VPS18ENSG00000104142.6630.26300267.832801.2345014.3166012.86630HepG2FXR1
VPS18ENSG00000104142.6403.38810248.364500.699604.351903.52550HepG2G3BP1
VPS18ENSG00000104142.6363.82050263.788000.463702.135001.35840HepG2G3BP2
VPS18ENSG00000104142.6317.04550133.969001.2427010.108308.46550HepG2GEMIN5
VPS18ENSG00000104142.6402.27740202.736400.988507.331605.65960HepG2GNB2L1
VPS18ENSG00000104142.6298.17530168.116100.826604.187402.82090HepG2GRSF1
VPS18ENSG00000104142.6416.77730222.917200.902707.384306.40490HepG2HNRNPA1
VPS18ENSG00000104142.6377.12020247.946300.604903.531802.75600HepG2HNRNPC
VPS18ENSG00000104142.6471.31860251.701000.904907.540006.43030HepG2HNRNPK
VPS18ENSG00000104142.6528.34740282.827600.901509.754108.15650HepG2HNRNPM
VPS18ENSG00000104142.6563.31650252.425201.1580012.3538011.04220HepG2IGF2BP2
VPS18ENSG00000104142.6328.97360251.596400.386802.321201.64270HepG2ILF2
VPS18ENSG00000104142.6830.33710432.048400.942408.744707.26160HepG2LARP4
VPS18ENSG00000104142.6354.39980198.677400.834805.678604.06920HepG2LARP7
VPS18ENSG00000104142.6366.77480208.531200.814505.335003.64660HepG2LIN28B
VPS18ENSG00000104142.6616.33540267.927101.2018013.3497011.95380HepG2MAGOH
VPS18ENSG00000104142.6291.89800168.167900.795504.636002.59570HepG2MARK2
VPS18ENSG00000104142.6635.39090269.398901.2378010.969709.77440HepG2MATR3
VPS18ENSG00000104142.6397.64210157.466001.336308.154506.44650HepG2METAP2
VPS18ENSG00000104142.6614.70160331.777900.8896010.007608.56410HepG2MSI2
VPS18ENSG00000104142.6795.41660275.722201.5284021.9847020.30960HepG2NCBP2
VPS18ENSG00000104142.6461.89490300.137000.621803.223101.67770HepG2NKRF
VPS18ENSG00000104142.6413.86350305.377400.438502.684701.93240HepG2NOL12
VPS18ENSG00000104142.6581.87680297.355800.968404.922203.44280HepG2NONO
VPS18ENSG00000104142.6224.67250382.73660-0.768505.060804.06210HepG2NSUN2
VPS18ENSG00000104142.6200.65430112.456400.835203.289301.54520HepG2PA2G4
VPS18ENSG00000104142.6382.53050166.018401.204104.522803.36820HepG2PABPC1
VPS18ENSG00000104142.6511.27590245.445001.0586010.103208.74480HepG2PABPC4
VPS18ENSG00000104142.6396.26990291.439500.443202.312501.74750HepG2PCBP1
VPS18ENSG00000104142.6205.12750124.440900.721003.549002.15300HepG2PKM
VPS18ENSG00000104142.6189.36370339.63550-0.842807.452906.25810HepG2PRPF4
VPS18ENSG00000104142.6359.93640249.591500.528102.209301.48500HepG2PRPF8
VPS18ENSG00000104142.6617.31110296.537601.057706.445205.67840HepG2PTBP1
VPS18ENSG00000104142.6536.70260291.501400.880508.856207.87040HepG2PUF60
VPS18ENSG00000104142.6673.69790309.432101.1224022.7176021.35420HepG2PUM1
VPS18ENSG00000104142.6653.41130309.212001.079308.907007.73770HepG2PUM2
VPS18ENSG00000104142.6562.79900354.864000.665307.890306.93910HepG2PUS1
VPS18ENSG00000104142.61320.70330502.431601.394208.890808.08350HepG2RBM22
VPS18ENSG00000104142.6438.91070239.582400.873306.104404.62280HepG2RBM27
VPS18ENSG00000104142.6356.92840194.552500.875403.995602.71880HepG2RCC2
VPS18ENSG00000104142.6575.11640330.028600.801209.031508.15630HepG2NELFE
VPS18ENSG00000104142.6430.60370146.439501.5560019.0735017.67380HepG2RPS19
VPS18ENSG00000104142.6473.17160220.941501.098609.758508.33500HepG2RPS2
VPS18ENSG00000104142.6422.77710225.551600.906306.604404.95260HepG2RPS5
VPS18ENSG00000104142.6365.46490246.885900.565802.001001.32210HepG2RRP9
VPS18ENSG00000104142.6285.23960146.937600.956906.168404.78130HepG2SERBP1
VPS18ENSG00000104142.61010.81600405.665701.3171016.2848014.57500HepG2SF3A3
VPS18ENSG00000104142.6510.77350308.757100.726107.301106.41360HepG2SF3B4
VPS18ENSG00000104142.6505.70850255.809900.9831014.3375013.05060HepG2SMN1
VPS18ENSG00000104142.6853.05120567.463200.588008.121907.38820HepG2SRFBP1
VPS18ENSG00000104142.6596.06950322.266100.8871011.3944010.57650HepG2SRSF1
VPS18ENSG00000104142.6413.41520287.803800.522403.868103.14930HepG2SRSF5
VPS18ENSG00000104142.6604.45130492.666500.294902.045001.58780HepG2SSB
VPS18ENSG00000104142.6284.25780158.855000.839404.904003.39540HepG2STIP1
VPS18ENSG00000104142.6785.31770327.321901.2625028.6116026.96220HepG2SUCLG1
VPS18ENSG00000104142.6173.00720289.63910-0.743405.149004.42310HepG2TAF15
VPS18ENSG00000104142.6315.46970239.363500.398201.930701.49700HepG2TIAL1
VPS18ENSG00000104142.6488.38060284.769000.778106.882405.40500HepG2TUFM
VPS18ENSG00000104142.61183.22990350.648301.7545037.0635034.70590HepG2U2AF1
VPS18ENSG00000104142.6699.42070255.890301.450505.306803.90330HepG2U2AF2
VPS18ENSG00000104142.6669.92890301.413401.1522010.308608.65690HepG2UBE2L3
VPS18ENSG00000104142.6271.11180190.313900.510402.063701.40760HepG2UCHL5
VPS18ENSG00000104142.6595.19320347.337400.776909.836008.81840HepG2UTP3
VPS18ENSG00000104142.6387.15240219.651000.817602.634701.60480HepG2XRCC6
VPS18ENSG00000104142.6593.85460395.670900.585707.133306.36030HepG2ZNF622
VPS18ENSG00000104142.6495.10280348.715300.505603.368102.64600K562AKAP8L
VPS18ENSG00000104142.6774.71350572.601000.436003.410602.02680K562APOBEC3C
VPS18ENSG00000104142.61255.55100529.668401.2451012.9951011.85850K562AQR
VPS18ENSG00000104142.6350.07490236.254900.567202.977502.07130K562BOP1
VPS18ENSG00000104142.6590.71320465.904600.342302.553201.92370K562DDX47
VPS18ENSG00000104142.6685.49130264.246601.3752019.3913016.70010K562EFTUD2
VPS18ENSG00000104142.6297.61310206.316900.528503.218301.90120K562EIF2S1
VPS18ENSG00000104142.6444.66590282.897700.652303.863602.61720K562EIF3D
VPS18ENSG00000104142.6237.83770170.926000.476502.347801.61110K562EIF3G
VPS18ENSG00000104142.6467.13770196.249101.2511014.9390012.95660K562EIF4A3
VPS18ENSG00000104142.6248.14120176.725900.489502.504601.42540K562EIF4B
VPS18ENSG00000104142.6371.66650255.607200.540002.915102.03690K562FMR1
VPS18ENSG00000104142.6609.69740204.089501.5788030.0097028.15360K562FXR1
VPS18ENSG00000104142.636.6266086.16530-1.234203.749102.89790K562G3BP2
VPS18ENSG00000104142.6353.64090239.821100.560203.194102.34350K562GPKOW
VPS18ENSG00000104142.6956.64660730.222400.389602.914402.14020K562GRSF1
VPS18ENSG00000104142.6432.33120267.574000.692105.133904.34350K562HNRNPC
VPS18ENSG00000104142.6565.78890421.037900.426202.942301.84940K562HNRNPL
VPS18ENSG00000104142.6266.02990172.097100.628302.757201.73230K562IGF2BP2
VPS18ENSG00000104142.6364.65520180.750401.012409.697608.06520K562MAGOH
VPS18ENSG00000104142.6309.64750180.365900.779605.717304.32530K562MATR3
VPS18ENSG00000104142.6364.66550234.096000.639404.037202.96590K562METAP2
VPS18ENSG00000104142.6525.57570425.392000.305002.017301.32160K562MTPAP
VPS18ENSG00000104142.6329.48400195.976500.749405.252803.56290K562NCBP2
VPS18ENSG00000104142.6418.66290260.443200.684704.344402.62370K562NONO
VPS18ENSG00000104142.6338.51630160.801801.073808.975907.18020K562PCBP2
VPS18ENSG00000104142.6719.32940257.143201.4840021.3918019.30700K562PRPF8
VPS18ENSG00000104142.6508.99970175.619101.5351024.6906022.78920K562PTBP1
VPS18ENSG00000104142.61096.44670708.022300.630905.637804.47640K562PUF60
VPS18ENSG00000104142.6426.49020336.961600.339801.835401.33460K562RBM15
VPS18ENSG00000104142.6375.16220168.333901.1561011.663409.76540K562RBM22
VPS18ENSG00000104142.6291.45070164.142300.828205.266803.14900K562RBM34
VPS18ENSG00000104142.6319.17630177.159400.849206.058904.35100K562NELFE
VPS18ENSG00000104142.6409.77670261.907200.645703.671102.72780K562RPS19
VPS18ENSG00000104142.6605.43660409.105900.565404.607003.20160K562SAFB
VPS18ENSG00000104142.6648.08930466.386300.474604.327503.32490K562SF3A3
VPS18ENSG00000104142.6334.61770228.110800.552702.592301.65230K562SF3B1
VPS18ENSG00000104142.6193.1870089.570901.108807.321805.88910K562SF3B4
VPS18ENSG00000104142.6413.93610172.178401.2654014.2122012.60310K562SRSF1
VPS18ENSG00000104142.6243.14070161.553500.589702.546301.54300K562SRSF4
VPS18ENSG00000104142.6272.19150162.642000.742804.537303.13430K562SRSF5
VPS18ENSG00000104142.6375.71950545.85100-0.538903.585102.01560K562SSRP1
VPS18ENSG00000104142.6380.05540248.930800.610403.308602.19060K562SUPV3L1
VPS18ENSG00000104142.6600.75080460.523700.383402.718101.90670K562SYNCRIP
VPS18ENSG00000104142.6474.09680174.227501.444103.859603.01820K562TARDBP
VPS18ENSG00000104142.6340.63530226.940300.585803.202301.38690K562TFIP11
VPS18ENSG00000104142.6332.58400168.069500.984608.358606.82200K562TIA1
VPS18ENSG00000104142.6285.22510164.993100.789604.823403.30520K562TRA2A
VPS18ENSG00000104142.6442.53900263.482300.748005.376503.91220K562UCHL5
VPS18ENSG00000104142.6658.03000501.154400.392803.474802.67520K562UPF1
VPS18ENSG00000104142.6489.40670268.329700.866907.381305.13230K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VPS18 is not available on ENCORE database.






No RBPs affect the alternative splcing events of VPS18 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for VPS18 is not avaliable on ENCORE database.