UCA1

General Information

Gene Name       : UCA1
Gene ID             : ENSG00000214049.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: UCA1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UCA1ENSG00000214049.70.000.000.00ENCSR000AEF
HepG2UCA1ENSG00000214049.70.150.180.16ENCSR985KAT
K562UCA1ENSG00000214049.795.15141.89118.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UCA1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • UCA1 RNA is bound by 12 proteins.  







eCLIP assay for UCA1 is not avaliable on ENCORE database.





12 proteins are bound to UCA1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191594356915943655+intron-Distal4.480006.87274K562HNRNPL
chr191594269515942763+intron-Distal3.679706.85260K562HNRNPK
chr191594448815944545+intron-Distal3.779513.23532K562MATR3
chr191594351015943569+intron-Distal4.008894.26070K562HNRNPL
chr191594338215943433+intron-Distal4.832014.71638K562HNRNPL
chr191594300515943070+intron-Distal5.648568.93487K562PTBP1
chr191594054115940604+intron-Distal6.034578.73280K562QKI
chr191594253315942576+intron-Distal5.140085.89856K562PTBP1
chr191594048615940594+intron-Distal5.9863517.58839K562PTBP1
chr191594277615942866+intron-Distal5.1602112.43349K562HNRNPK
chr191594372815943753+intron-Distal3.429123.09949K562HNRNPL
chr191594393715944030+intron-Distal3.346096.34420K562HNRNPK
chr191594445715944536+intron-Distal4.162035.93532K562PTBP1
chr191594365515943725+intron-Distal4.010876.23199K562HNRNPL
chr191594458715944671+intron-Distal5.096805.33971K562HNRNPK
chr191594290715942955+intron-Distal5.065297.37220K562HNRNPK
chr191594017515940256+intron-Distal,intron-Proximal3.972876.87998K562TIA1
chr191594375315943842+intron-Distal3.777126.14250K562HNRNPL
chr191594341715943503+intron-Distal4.518007.85389K562HNRNPK
chr191594416715944213+intron-Distal3.637065.38148K562HNRNPL
chr191594394115943975+intron-Distal4.732123.42734K562PTBP1
chr191594091915940960+intron-Distal4.151893.06617K562HNRNPK
chr191594302315943086+intron-Distal5.071254.19401K562HNRNPK
chr191594308415943150+intron-Distal5.296768.54663K562PTBP1
chr191594350315943549+intron-Distal3.808273.72310K562HNRNPK
chr191594048815940541+intron-Distal3.513634.94630K562QKI
chr191594602115946160+intron-Proximal3.947369.49686K562GRWD1
chr191594014815940226+intron-Proximal4.461417.53589K562AQR
chr191594611815946161+intron-Proximal3.362286.13091K562YBX3
chr191594602015946150+intron-Proximal3.7657117.49386K562IGF2BP1
chr191594602815946123+intron-Proximal4.035883.48245K562SRSF7
chr191594215515942208+intron-Proximal4.066315.97994K562AQR
chr191594604615946116+intron-Proximal3.553525.86303K562IGF2BP2
chr191594017015940237+intron-Proximal3.439647.00576K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UCA1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UCA1 is not available on ENCORE database.

  • 131 RBPs can affect the levels of UCA1.  








The Knockdown/knockout RNA-Seq assay for UCA1 is not available on ENCORE database.





131 RBPs can affect the gene expression of UCA1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UCA1ENSG00000214049.655.6535012.749302.126005.530004.08000HepG2AKAP8
UCA1ENSG00000214049.618.845104.445302.083701.977701.31030HepG2ASCC1
UCA1ENSG00000214049.6215.8496030.264902.834205.096004.21030HepG2AUH
UCA1ENSG00000214049.648.8501015.984701.611602.727901.79810HepG2BCCIP
UCA1ENSG00000214049.633.31980217.31970-2.705402.625802.04080HepG2BOP1
UCA1ENSG00000214049.69.5905037.43190-1.964603.414502.56880HepG2CALR
UCA1ENSG00000214049.6130.4480058.781401.149904.187902.97540HepG2CCAR1
UCA1ENSG00000214049.652.713704.653103.501808.228206.92590HepG2CNOT7
UCA1ENSG00000214049.635.50060199.53980-2.490802.292101.65840HepG2CPSF6
UCA1ENSG00000214049.656.3376022.265201.339202.968001.82600HepG2CPSF7
UCA1ENSG00000214049.643.4564020.090601.112902.134701.55880HepG2CELF1
UCA1ENSG00000214049.633.7430010.065701.745003.371802.46210HepG2DDX19B
UCA1ENSG00000214049.630.30730226.58270-2.902302.745301.77140HepG2DDX59
UCA1ENSG00000214049.656.9965025.991701.132702.477601.51640HepG2DDX5
UCA1ENSG00000214049.6249.215604.425205.8154051.3381049.18680HepG2DDX6
UCA1ENSG00000214049.62.7678022.61710-3.030603.805602.66520HepG2DHX30
UCA1ENSG00000214049.617.885604.248902.073501.880801.38110HepG2EIF2S1
UCA1ENSG00000214049.61.2520021.31160-4.089304.587103.55080HepG2EIF4G1
UCA1ENSG00000214049.63.8219023.41740-2.615203.201802.02830HepG2ESF1
UCA1ENSG00000214049.665.6437034.743200.917802.095201.55710HepG2ETF1
UCA1ENSG00000214049.6125.3039010.638903.557903.641302.68370HepG2EWSR1
UCA1ENSG00000214049.62129.4756027.292706.2857019.4077017.70110HepG2FIP1L1
UCA1ENSG00000214049.614.11120199.82260-3.823803.736202.55150HepG2FTO
UCA1ENSG00000214049.629.941104.742602.658303.835803.03130HepG2FXR1
UCA1ENSG00000214049.622.464604.307502.382602.821801.69940HepG2GRSF1
UCA1ENSG00000214049.622.101103.934902.489603.124601.67140HepG2HNRNPA0
UCA1ENSG00000214049.63.6489023.67300-2.697703.079902.40210HepG2HNRNPA1
UCA1ENSG00000214049.635.27670223.90850-2.666108.055206.91050HepG2HNRNPF
UCA1ENSG00000214049.644.5793019.673601.180002.435201.79900HepG2HNRNPL
UCA1ENSG00000214049.68.61640215.92840-4.647304.581303.79130HepG2HNRNPLL
UCA1ENSG00000214049.659.3522018.835101.655804.339903.17360HepG2HNRNPM
UCA1ENSG00000214049.625.13810220.49400-3.132809.482108.21600HepG2IGF2BP1
UCA1ENSG00000214049.679.886107.250703.461606.495904.93900HepG2METAP2
UCA1ENSG00000214049.653.4593018.552301.526703.924502.47620HepG2NAA15
UCA1ENSG00000214049.66.04080191.40520-4.985704.778303.80530HepG2NSUN2
UCA1ENSG00000214049.6126.4126025.891102.2875013.9349012.28120HepG2PARN
UCA1ENSG00000214049.611.5705049.70710-2.103002.298601.58630HepG2PRPF4
UCA1ENSG00000214049.629.505602.597403.505805.906605.16800HepG2PTBP1
UCA1ENSG00000214049.654.4194020.445801.412203.172302.54030HepG2PUF60
UCA1ENSG00000214049.6242.375906.105805.3108039.9705037.63160HepG2RAVER1
UCA1ENSG00000214049.688.7122021.187602.065804.248901.92970HepG2RBM17
UCA1ENSG00000214049.6109.0951029.039901.909406.289505.58530HepG2RBM22
UCA1ENSG00000214049.660.128807.747702.956102.347601.44210HepG2RBM27
UCA1ENSG00000214049.687.39680241.08380-1.463903.889703.10220HepG2RPLP0
UCA1ENSG00000214049.651.016606.741902.919607.063406.13310HepG2RPS19
UCA1ENSG00000214049.663.9831011.992602.415406.206705.07880HepG2RRP9
UCA1ENSG00000214049.648.459308.955202.435906.238005.20040HepG2SF3A3
UCA1ENSG00000214049.639.58230213.77150-2.433102.288301.64390HepG2SF3B1
UCA1ENSG00000214049.614.064402.702402.379601.858801.35760HepG2SF3B4
UCA1ENSG00000214049.6319.3319019.843204.0082019.5387015.48050HepG2SFPQ
UCA1ENSG00000214049.63.6839019.60680-2.412102.518101.84410HepG2SLBP
UCA1ENSG00000214049.6306.8902027.164203.4978029.7599028.01420HepG2SMN1
UCA1ENSG00000214049.632.388806.223602.379604.395203.17030HepG2SMNDC1
UCA1ENSG00000214049.687.6060018.263102.262004.549602.77810HepG2SNRNP200
UCA1ENSG00000214049.617.85970237.84210-3.735203.687002.78070HepG2SNRNP70
UCA1ENSG00000214049.6370.9038032.801303.4991059.6375058.08720HepG2SRFBP1
UCA1ENSG00000214049.624.284002.821503.105403.838003.30400HepG2SRSF1
UCA1ENSG00000214049.657.56250219.95490-1.934005.145604.24340HepG2SRSF7
UCA1ENSG00000214049.642.018702.296004.1937010.425809.47320HepG2SRSF9
UCA1ENSG00000214049.65.4438028.48250-2.387403.708203.13380HepG2SSB
UCA1ENSG00000214049.6114.3163018.435202.632403.494402.44680HepG2SUPT6H
UCA1ENSG00000214049.672.5850010.486402.791109.075507.48150HepG2TFIP11
UCA1ENSG00000214049.637.334509.242102.014104.001403.08880HepG2UCHL5
UCA1ENSG00000214049.69.7507049.04170-2.330402.481001.83950HepG2ZC3H8
UCA1ENSG00000214049.646.555008.734502.414006.249705.51370HepG2ZNF622
UCA1ENSG00000214049.63070.100104342.40410-0.500207.249805.28580K562AARS
UCA1ENSG00000214049.61889.140103316.26600-0.8118015.8587013.06260K562AKAP8
UCA1ENSG00000214049.62312.887604883.24400-1.0781029.5890025.66200K562APOBEC3C
UCA1ENSG00000214049.61511.475803196.97350-1.0807023.8805022.34420K562AQR
UCA1ENSG00000214049.61741.923802140.98420-0.297603.962901.45990K562ASCC1
UCA1ENSG00000214049.62260.875203295.00310-0.5434011.354409.32640K562ATP5C1
UCA1ENSG00000214049.64330.562103042.189000.5093010.231208.36960K562BCLAF1
UCA1ENSG00000214049.65360.703202784.715500.944806.690004.87460K562CCAR1
UCA1ENSG00000214049.68451.491305799.994100.543105.932103.72070K562CEBPZ
UCA1ENSG00000214049.617095.908706768.016001.336707.160105.39970K562CNOT7
UCA1ENSG00000214049.62802.308002307.952300.279902.516101.51380K562CSTF2
UCA1ENSG00000214049.610046.465206804.253400.5621013.0390011.01600K562CELF1
UCA1ENSG00000214049.64606.806203541.119900.379503.592201.91460K562DDX19B
UCA1ENSG00000214049.61299.128902668.25820-1.0384012.552909.92830K562DDX27
UCA1ENSG00000214049.61185.964702220.07420-0.9045019.4752016.63060K562DDX3X
UCA1ENSG00000214049.62657.157207594.19190-1.51500113.64500110.14550K562DDX47
UCA1ENSG00000214049.65338.544603117.876500.775806.225604.11160K562DHX30
UCA1ENSG00000214049.62480.992703379.73120-0.446008.572906.87170K562DKC1
UCA1ENSG00000214049.65504.754402994.353200.878307.422405.30900K562DNAJC21
UCA1ENSG00000214049.61664.103902758.52340-0.729204.789103.06420K562EEF2
UCA1ENSG00000214049.61847.344402664.71390-0.528503.248702.25400K562EFTUD2
UCA1ENSG00000214049.62275.357403295.39730-0.534403.286902.51440K562EIF2S2
UCA1ENSG00000214049.61160.863902832.37910-1.286804.583503.25890K562EIF3A
UCA1ENSG00000214049.61403.927402852.15410-1.022607.054805.29030K562EIF3D
UCA1ENSG00000214049.61150.896401594.55330-0.470406.890205.64530K562EIF3G
UCA1ENSG00000214049.61414.269702319.43880-0.7137011.231609.55270K562EIF4A3
UCA1ENSG00000214049.61565.822102088.78930-0.415705.973204.16690K562EIF4B
UCA1ENSG00000214049.63638.222305534.10560-0.6051016.3965014.23140K562EIF4G2
UCA1ENSG00000214049.61520.813302024.63950-0.412803.005601.64500K562EWSR1
UCA1ENSG00000214049.67619.646403697.710701.0430032.7529028.84220K562EXOSC5
UCA1ENSG00000214049.66145.072307485.57660-0.284702.148001.34690K562FTO
UCA1ENSG00000214049.61043.120702412.12030-1.2094046.0690043.78120K562FXR1
UCA1ENSG00000214049.62304.660504123.11850-0.839206.476603.26310K562FXR2
UCA1ENSG00000214049.61525.742802163.28160-0.503702.389401.73900K562G3BP2
UCA1ENSG00000214049.63151.726104390.77190-0.478302.344001.64550K562GRSF1
UCA1ENSG00000214049.63437.462404242.22650-0.303503.134701.91590K562HNRNPF
UCA1ENSG00000214049.61648.470202413.99720-0.550305.781903.93060K562HNRNPK
UCA1ENSG00000214049.69608.057006862.980900.485307.792105.92840K562HNRNPL
UCA1ENSG00000214049.63958.969807609.80530-0.9427016.0372014.21790K562HSPD1
UCA1ENSG00000214049.69517.964906670.120000.512804.344802.05820K562IGF2BP1
UCA1ENSG00000214049.61519.710102417.28400-0.669606.979105.04700K562IGF2BP2
UCA1ENSG00000214049.61695.616402458.61150-0.536006.827204.83570K562IGF2BP3
UCA1ENSG00000214049.62782.635703333.02600-0.260402.887902.04250K562KIF1C
UCA1ENSG00000214049.61377.609602540.23870-0.8828018.7147016.36480K562MAGOH
UCA1ENSG00000214049.62328.283103190.36360-0.454506.281904.40200K562MAK16
UCA1ENSG00000214049.61744.805902535.05010-0.538907.888906.22900K562MATR3
UCA1ENSG00000214049.62998.286603733.80310-0.316502.662601.77540K562MBNL1
UCA1ENSG00000214049.612927.528008087.488400.6766014.5295012.45060K562METAP2
UCA1ENSG00000214049.610201.913705898.861700.7902016.6247014.10640K562MSI2
UCA1ENSG00000214049.61205.380702316.08640-0.9422023.1041020.06060K562NCBP2
UCA1ENSG00000214049.63627.876402627.928400.465103.307101.86730K562NONO
UCA1ENSG00000214049.617012.028007117.836801.2569065.0962062.34140K562NSUN2
UCA1ENSG00000214049.61099.222802284.52400-1.055409.505406.29770K562PABPC4
UCA1ENSG00000214049.61398.283002483.18530-0.8285018.0883014.89110K562PCBP1
UCA1ENSG00000214049.61484.239502260.14110-0.606708.521306.76880K562PCBP2
UCA1ENSG00000214049.65920.854004703.448900.332002.456101.67360K562PCBP3
UCA1ENSG00000214049.64128.272402525.278800.709004.030601.80440K562PES1
UCA1ENSG00000214049.6666.985102593.09760-1.9590018.6038016.63800K562PRPF8
UCA1ENSG00000214049.61134.588302468.01830-1.1212030.7923028.66860K562PTBP1
UCA1ENSG00000214049.67289.180306292.833700.211902.943801.95540K562PUM2
UCA1ENSG00000214049.61403.851802063.63320-0.555803.253401.69440K562RAVER1
UCA1ENSG00000214049.62340.418003034.65750-0.374805.655604.83280K562RBM15
UCA1ENSG00000214049.61507.720002366.40830-0.650309.342907.65110K562RBM22
UCA1ENSG00000214049.61448.385402049.96860-0.501202.929901.55360K562RBM25
UCA1ENSG00000214049.61414.510502490.29580-0.8160012.5976010.27390K562NELFE
UCA1ENSG00000214049.6553.281802640.67440-2.2548022.5861020.27040K562RPS19
UCA1ENSG00000214049.62088.859403946.86090-0.9180014.9087012.50710K562RPS3
UCA1ENSG00000214049.612524.541607022.357100.8346023.5371021.39020K562SF3A3
UCA1ENSG00000214049.65079.676007881.14430-0.633707.828906.14410K562SF3B1
UCA1ENSG00000214049.61414.481202247.62070-0.668104.863303.71520K562SF3B4
UCA1ENSG00000214049.67566.694203066.382301.3030011.303808.93120K562SLBP
UCA1ENSG00000214049.64216.771607194.45440-0.770708.411106.87760K562SRPK2
UCA1ENSG00000214049.61009.124402419.50680-1.2616036.9845034.45730K562SRSF1
UCA1ENSG00000214049.61503.930202285.10630-0.603507.800905.93020K562SRSF5
UCA1ENSG00000214049.68213.022205950.125700.464905.438803.78010K562SRSF7
UCA1ENSG00000214049.62077.989101644.773200.337204.028202.44060K562SSB
UCA1ENSG00000214049.65931.464107364.41580-0.312202.932001.52730K562SSRP1
UCA1ENSG00000214049.69320.800006735.933700.468504.860203.12510K562STAU1
UCA1ENSG00000214049.69495.944105268.387900.8498027.9874024.65520K562SUCLG1
UCA1ENSG00000214049.61241.641102509.45020-1.015108.855706.98380K562SUPV3L1
UCA1ENSG00000214049.61145.050502448.64270-1.0966022.1741019.76100K562TARDBP
UCA1ENSG00000214049.63141.152602288.270900.456903.635101.70090K562TFIP11
UCA1ENSG00000214049.61381.550302362.00710-0.7737015.4767013.41110K562TIA1
UCA1ENSG00000214049.67488.788004096.077600.8704015.3155012.99840K562TIAL1
UCA1ENSG00000214049.61813.222902317.96410-0.354303.260102.05700K562TRA2A
UCA1ENSG00000214049.6737.735002094.88550-1.5057014.6948011.96580K562U2AF1
UCA1ENSG00000214049.6809.945002164.22730-1.4180013.0723011.31050K562U2AF2
UCA1ENSG00000214049.69513.979706807.635500.482807.793105.55730K562UBE2L3
UCA1ENSG00000214049.63379.399302656.558800.347102.338201.41090K562UCHL5
UCA1ENSG00000214049.620221.691407547.133001.42180125.02270121.76110K562UPF1
UCA1ENSG00000214049.612975.869506457.941501.0066031.5799028.88190K562WDR3
UCA1ENSG00000214049.64705.459906714.83480-0.513004.646303.57200K562WDR43
UCA1ENSG00000214049.62921.115303788.67020-0.375202.965401.62520K562WRN
UCA1ENSG00000214049.61734.305302818.18500-0.700403.932601.96910K562XRCC6
UCA1ENSG00000214049.63783.262902706.089300.483304.125302.53310K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UCA1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of UCA1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for UCA1 is not avaliable on ENCORE database.