SFXN3

General Information

Gene Name       : SFXN3
Gene ID             : ENSG00000107819.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SFXN3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SFXN3ENSG00000107819.130.841.150.99ENCSR000AEF
HepG2SFXN3ENSG00000107819.1313.7811.7412.76ENCSR985KAT
K562SFXN3ENSG00000107819.131.180.991.08ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SFXN3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SFXN3 RNA is bound by 5 proteins.  







eCLIP assay for SFXN3 is not avaliable on ENCORE database.





5 proteins are bound to SFXN3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10102796920102796962+3'-UTR,CDS,intron-Proximal4.562484.08604HepG2PPIG
chr10102798960102799054+CDS,intron-Proximal3.688046.78376HepG2EFTUD2
chr10102797159102797241+CDS,intron-Proximal3.882156.18341HepG2PRPF8
chr10102795251102795302+CDS,intron-Proximal3.515933.05161HepG2PPIG
chr10102797138102797242+CDS,intron-Proximal5.7604312.49325HepG2PPIG
chr10102798382102798441+CDS,intron-Proximal4.392644.20763HepG2U2AF2
chr10102796265102796313+CDS3.627123.05161HepG2PPIG
chr10102797194102797328+intron-Distal,intron-Proximal3.3384010.84927HepG2EFTUD2
chr10102798189102798230+intron-Distal4.120223.82843HepG2PPIG
chr10102798156102798269+intron-Distal3.221863.38462HepG2AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SFXN3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SFXN3 is not available on ENCORE database.

  • 133 RBPs can affect the levels of SFXN3.  








The Knockdown/knockout RNA-Seq assay for SFXN3 is not available on ENCORE database.





133 RBPs can affect the gene expression of SFXN3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SFXN3ENSG00000107819.91386.739702421.13680-0.804009.288508.37710HepG2AKAP1
SFXN3ENSG00000107819.91157.151402003.30720-0.7918010.387108.93610HepG2ASCC1
SFXN3ENSG00000107819.91923.292101240.845400.6322014.4989013.14550HepG2AUH
SFXN3ENSG00000107819.9908.05970651.507000.478903.421202.42480HepG2BCLAF1
SFXN3ENSG00000107819.91941.704201183.990600.713604.165502.66970HepG2BUD13
SFXN3ENSG00000107819.9695.139601280.06430-0.8808024.6442023.10870HepG2CKAP4
SFXN3ENSG00000107819.9903.877901272.32140-0.493302.542001.81050HepG2CNOT7
SFXN3ENSG00000107819.91372.038501125.044000.286202.834301.80420HepG2YBX3
SFXN3ENSG00000107819.9168.75080463.15340-1.4566017.5787015.28770HepG2CSTF2
SFXN3ENSG00000107819.91449.288201659.49650-0.195402.124101.46160HepG2DAZAP1
SFXN3ENSG00000107819.9355.98020558.47810-0.649704.190202.49040HepG2DDX28
SFXN3ENSG00000107819.91898.947302319.30850-0.288501.824001.30480HepG2DDX3X
SFXN3ENSG00000107819.91830.24610737.163401.3119021.3642019.52030HepG2DDX55
SFXN3ENSG00000107819.9918.534201224.87620-0.415203.599702.84480HepG2DKC1
SFXN3ENSG00000107819.9898.962901094.96430-0.284603.253702.55680HepG2DNAJC2
SFXN3ENSG00000107819.9828.066201238.60240-0.580905.459704.20190HepG2EEF2
SFXN3ENSG00000107819.91591.059701168.667000.445002.971401.81760HepG2AGO1
SFXN3ENSG00000107819.9636.416701005.46650-0.659805.762004.49190HepG2EIF3D
SFXN3ENSG00000107819.9778.380501198.23990-0.622405.232703.80150HepG2EIF3G
SFXN3ENSG00000107819.91040.726901450.92770-0.479404.003301.85500HepG2EIF3H
SFXN3ENSG00000107819.9933.446502116.66000-1.1812018.5422016.90320HepG2EIF4A3
SFXN3ENSG00000107819.9576.258302060.77360-1.8384032.3674030.21270HepG2EIF4B
SFXN3ENSG00000107819.91376.557701637.21650-0.250202.552201.74250HepG2EIF4G1
SFXN3ENSG00000107819.9697.353401251.11510-0.8433013.7992012.01160HepG2EWSR1
SFXN3ENSG00000107819.91253.86180898.642600.480505.663003.94780HepG2FAM120A
SFXN3ENSG00000107819.9906.76290613.591500.563304.161102.62610HepG2FKBP4
SFXN3ENSG00000107819.91111.978701491.20990-0.423402.335501.30530HepG2FUS
SFXN3ENSG00000107819.91271.238802135.47550-0.748309.539908.32620HepG2FXR1
SFXN3ENSG00000107819.91929.09300659.120701.5492031.5217029.64130HepG2GPKOW
SFXN3ENSG00000107819.9597.635501177.93420-0.978909.071107.07550HepG2GRSF1
SFXN3ENSG00000107819.91562.816701222.328300.354404.889503.62830HepG2HDGF
SFXN3ENSG00000107819.9687.860901051.23520-0.611904.566602.75150HepG2HNRNPAB
SFXN3ENSG00000107819.9606.444801240.54270-1.0325017.0145015.44040HepG2HNRNPC
SFXN3ENSG00000107819.91177.71700972.351900.276302.622501.92400HepG2HNRNPF
SFXN3ENSG00000107819.9986.212702005.80690-1.0242018.7359017.06820HepG2HNRNPK
SFXN3ENSG00000107819.91285.953301511.66670-0.233302.767202.09340HepG2HNRNPL
SFXN3ENSG00000107819.91378.72870629.011401.1321018.5355017.11930HepG2HNRNPLL
SFXN3ENSG00000107819.91454.49850957.486900.603102.692701.97810HepG2IGF2BP1
SFXN3ENSG00000107819.91256.919302013.71450-0.680008.083706.99170HepG2IGF2BP2
SFXN3ENSG00000107819.9793.289601889.67430-1.252206.622905.13960HepG2IGF2BP3
SFXN3ENSG00000107819.91347.160802136.22040-0.665107.466306.40330HepG2MAGOH
SFXN3ENSG00000107819.91307.059702148.20030-0.716807.734406.72100HepG2MATR3
SFXN3ENSG00000107819.9908.91120641.519800.502502.629501.68750HepG2MTPAP
SFXN3ENSG00000107819.91539.453302198.82170-0.514304.683103.87190HepG2NCBP2
SFXN3ENSG00000107819.9995.35280557.742200.8355010.051608.69630HepG2NSUN2
SFXN3ENSG00000107819.9816.121501219.79240-0.579807.961406.64280HepG2PARN
SFXN3ENSG00000107819.91493.786902188.25480-0.5508012.5408011.39750HepG2PCBP1
SFXN3ENSG00000107819.91661.924601217.549300.448803.958001.89420HepG2PES1
SFXN3ENSG00000107819.9648.71970831.49620-0.358102.862501.61050HepG2PKM
SFXN3ENSG00000107819.91356.710701945.82850-0.520304.182901.98410HepG2PPIG
SFXN3ENSG00000107819.9660.116701036.23080-0.6506010.816409.43120HepG2PRPF4
SFXN3ENSG00000107819.9883.309901483.92160-0.748405.669403.97530HepG2PRPF6
SFXN3ENSG00000107819.91156.508702226.54910-0.9450031.9222030.47110HepG2PTBP1
SFXN3ENSG00000107819.92381.871201570.832700.600508.955007.96520HepG2PUF60
SFXN3ENSG00000107819.9564.721201667.51630-1.5621079.0295076.79710HepG2PUM1
SFXN3ENSG00000107819.91077.135901666.29330-0.6294010.039908.80500HepG2PUM2
SFXN3ENSG00000107819.91126.119301304.03120-0.211602.047901.49960HepG2PUS1
SFXN3ENSG00000107819.92072.648202411.58240-0.218502.133101.57270HepG2QKI
SFXN3ENSG00000107819.9849.801301362.13250-0.680703.879303.04780HepG2RAVER1
SFXN3ENSG00000107819.92374.959501738.423600.450005.004303.89380HepG2RBM15
SFXN3ENSG00000107819.91499.300601190.739800.332303.755903.17660HepG2RBM22
SFXN3ENSG00000107819.91291.605602188.60000-0.7608014.2519012.78740HepG2RBM25
SFXN3ENSG00000107819.9536.932301422.09440-1.4052027.7701024.72830HepG2RBM27
SFXN3ENSG00000107819.9793.809901229.08030-0.630704.450702.52670HepG2RBM47
SFXN3ENSG00000107819.9847.343501154.80050-0.446602.672101.63340HepG2RCC2
SFXN3ENSG00000107819.91152.770902478.00350-1.1041043.3364041.77380HepG2NELFE
SFXN3ENSG00000107819.91096.115102307.79990-1.0741041.2135039.39890HepG2RECQL
SFXN3ENSG00000107819.91577.896001047.493100.591006.860405.85480HepG2RPLP0
SFXN3ENSG00000107819.9674.185201311.60140-0.9601013.6536011.97500HepG2RPS2
SFXN3ENSG00000107819.9947.438901338.80270-0.498804.298402.94470HepG2RPS5
SFXN3ENSG00000107819.91475.745901097.447100.427207.249506.27730HepG2SAFB2
SFXN3ENSG00000107819.9772.374501203.72040-0.640105.102203.31930HepG2SART3
SFXN3ENSG00000107819.9735.310101619.39620-1.1390014.5304012.91810HepG2SF3A3
SFXN3ENSG00000107819.9278.64890622.59440-1.1598013.9498012.49360HepG2SF3B1
SFXN3ENSG00000107819.9945.962102318.27210-1.2932045.9607044.12060HepG2SF3B4
SFXN3ENSG00000107819.91920.454001506.200100.350406.227705.24180HepG2SLBP
SFXN3ENSG00000107819.91091.453201279.79810-0.229702.592601.96680HepG2SMN1
SFXN3ENSG00000107819.9731.317001389.43060-0.925909.290307.48120HepG2SMNDC1
SFXN3ENSG00000107819.91150.52090628.881700.871302.690501.40420HepG2SNRNP200
SFXN3ENSG00000107819.91068.41520692.746400.625003.818102.89380HepG2SNRNP70
SFXN3ENSG00000107819.91078.070802419.71410-1.1664049.8241048.36690HepG2SRSF1
SFXN3ENSG00000107819.9675.006301550.97810-1.2002039.5692037.58480HepG2SRSF5
SFXN3ENSG00000107819.91406.544501968.51460-0.485007.736406.89860HepG2SRSF9
SFXN3ENSG00000107819.91460.652401167.703400.322804.231103.62590HepG2SSB
SFXN3ENSG00000107819.9999.040601996.00260-0.9985014.0431011.54740HepG2SSRP1
SFXN3ENSG00000107819.91045.237701763.88120-0.7549021.5790020.10570HepG2SUCLG1
SFXN3ENSG00000107819.9945.45780733.851800.365402.167701.55880HepG2SUPV3L1
SFXN3ENSG00000107819.92879.086101960.540300.554302.341801.35970HepG2TBRG4
SFXN3ENSG00000107819.9805.612801367.89250-0.763806.127903.98890HepG2TRA2A
SFXN3ENSG00000107819.91524.693801208.155700.335603.381602.77210HepG2TRIM56
SFXN3ENSG00000107819.9864.598101365.27960-0.659101.885601.35570HepG2U2AF1
SFXN3ENSG00000107819.92036.965201624.411500.326402.219701.47450HepG2UBE2L3
SFXN3ENSG00000107819.9314.46480433.52050-0.463202.446201.73240HepG2UCHL5
SFXN3ENSG00000107819.91893.048601436.154200.398406.379105.39050HepG2UPF1
SFXN3ENSG00000107819.9503.661901386.55450-1.4610051.0334048.96970HepG2UTP3
SFXN3ENSG00000107819.9835.729601498.08930-0.842007.567805.89260HepG2XRCC6
SFXN3ENSG00000107819.93007.191201579.498400.9289047.8750046.32690HepG2ZNF622
SFXN3ENSG00000107819.9129.3198047.745101.437406.369204.52430K562ABCF1
SFXN3ENSG00000107819.9132.8642065.294501.024804.453603.61790K562AKAP8L
SFXN3ENSG00000107819.990.9776037.192801.290404.677102.89140K562BCCIP
SFXN3ENSG00000107819.999.2062035.919901.465506.069604.62820K562BCLAF1
SFXN3ENSG00000107819.9128.5111056.368001.188804.566703.43490K562BOP1
SFXN3ENSG00000107819.9100.7958033.261701.599406.179803.99410K562BUD13
SFXN3ENSG00000107819.9129.5852074.983700.789203.092601.83570K562CCDC124
SFXN3ENSG00000107819.9248.6519087.915101.4998010.812007.94710K562CKAP4
SFXN3ENSG00000107819.9155.2968059.318401.388405.662104.08540K562CNOT7
SFXN3ENSG00000107819.9165.6588059.927901.466808.488507.09910K562CPSF6
SFXN3ENSG00000107819.9235.00560120.763800.960404.971103.65690K562CELF1
SFXN3ENSG00000107819.977.8943033.792201.204703.481501.97030K562DHX30
SFXN3ENSG00000107819.938.4390070.25250-0.870002.076601.32910K562DKC1
SFXN3ENSG00000107819.9133.6241084.000500.669602.607801.44110K562EIF2S1
SFXN3ENSG00000107819.990.5837047.486700.931602.844502.11720K562EIF2S2
SFXN3ENSG00000107819.922.6860054.24740-1.257802.799101.99810K562EIF3G
SFXN3ENSG00000107819.9123.1591036.506901.754207.516004.78280K562ESF1
SFXN3ENSG00000107819.967.7195034.328300.980102.375601.58970K562FIP1L1
SFXN3ENSG00000107819.9177.9606060.989601.544804.641103.53000K562FMR1
SFXN3ENSG00000107819.9164.6746051.700401.671309.862508.02360K562FTO
SFXN3ENSG00000107819.925.9857083.08320-1.676806.049705.20650K562FXR1
SFXN3ENSG00000107819.9114.8689054.276201.081504.495803.04570K562GLRX3
SFXN3ENSG00000107819.9187.4029057.210501.7117011.190709.57050K562GPKOW
SFXN3ENSG00000107819.9103.3608049.957501.048803.283302.64130K562HNRNPC
SFXN3ENSG00000107819.952.2607091.27350-0.804502.496401.37850K562IGF2BP3
SFXN3ENSG00000107819.987.2825031.536501.468605.242203.18300K562ILF3
SFXN3ENSG00000107819.965.7845030.479101.109802.804601.31130K562KHDRBS1
SFXN3ENSG00000107819.9128.4155069.288700.890003.384402.46060K562KIF1C
SFXN3ENSG00000107819.9171.7862048.866101.813609.509807.67030K562KRR1
SFXN3ENSG00000107819.942.6941094.29150-1.143104.104203.07500K562MAGOH
SFXN3ENSG00000107819.9126.3016077.621600.702202.279601.46740K562MBNL1
SFXN3ENSG00000107819.9113.8582055.846401.027603.588602.58370K562METAP2
SFXN3ENSG00000107819.9212.06070104.636901.019002.998801.82060K562MSI2
SFXN3ENSG00000107819.9141.7934063.401401.161105.900904.86830K562NSUN2
SFXN3ENSG00000107819.9108.0229056.988100.922502.621801.42900K562PABPC1
SFXN3ENSG00000107819.977.2081038.975200.986102.765901.94530K562PPIG
SFXN3ENSG00000107819.9115.5394052.809501.129403.504001.46010K562PPIL4
SFXN3ENSG00000107819.9121.1836044.797101.435602.158901.36960K562PSIP1
SFXN3ENSG00000107819.924.6435091.61230-1.894308.636807.50540K562PTBP1
SFXN3ENSG00000107819.9241.28530111.625301.112007.007205.45900K562PUM2
SFXN3ENSG00000107819.9139.1375058.296301.254903.439501.68510K562RBM39
SFXN3ENSG00000107819.9117.9981054.043701.126503.447401.69990K562SBDS
SFXN3ENSG00000107819.9148.0962062.565201.243003.559902.64250K562SF3A3
SFXN3ENSG00000107819.9132.4684052.781901.327402.936101.57500K562SFPQ
SFXN3ENSG00000107819.984.1706033.248401.339904.403402.76950K562SLBP
SFXN3ENSG00000107819.946.1129089.81400-0.961802.815602.10340K562SRSF1
SFXN3ENSG00000107819.9101.8802041.186401.306504.773603.05800K562STAU1
SFXN3ENSG00000107819.9167.5565093.451300.842303.635301.91060K562SUCLG1
SFXN3ENSG00000107819.916.1867059.86330-1.886905.391804.23840K562SYNCRIP
SFXN3ENSG00000107819.9110.5818043.084401.359805.158903.84140K562TIAL1
SFXN3ENSG00000107819.999.5796045.798401.120503.085502.07590K562TRIM56
SFXN3ENSG00000107819.9133.5951040.134701.734808.954306.38470K562TRIP6
SFXN3ENSG00000107819.9144.9120089.089400.701802.637501.40090K562TROVE2
SFXN3ENSG00000107819.9216.43520120.803100.841203.879102.20880K562UBE2L3
SFXN3ENSG00000107819.9161.2836039.023002.047109.489707.54180K562UCHL5
SFXN3ENSG00000107819.9110.0302067.226100.710702.393801.72320K562UPF1
SFXN3ENSG00000107819.9196.0542078.039501.328908.127606.15900K562UTP3
SFXN3ENSG00000107819.9120.7790057.522801.070104.517803.38570K562WDR3
SFXN3ENSG00000107819.9159.7206087.416600.869504.043802.47700K562WRN
SFXN3ENSG00000107819.9131.8484083.042100.666902.418601.62030K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SFXN3 is not available on ENCORE database.





1 RBPs can affect the splicing of SFXN3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSSFXN3ENSG00000107819.9chr10+102796423102796565102796479102796565102796242102796318-0.136000.000190.05840shorterHepG2TBRG4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SFXN3 is not avaliable on ENCORE database.