RPF2

General Information

Gene Name       : RPF2
Gene ID             : ENSG00000197498.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RPF2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RPF2ENSG00000197498.1252.4145.8449.12ENCSR000AEF
HepG2RPF2ENSG00000197498.1218.7447.5233.13ENCSR985KAT
K562RPF2ENSG00000197498.1282.88103.1893.03ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RPF2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RPF2 RNA is bound by 11 proteins.  







eCLIP assay for RPF2 is not avaliable on ENCORE database.





11 proteins are bound to RPF2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6111345406111345479+3'-UTR,CDS3.584334.45064HepG2GRWD1
chr6111346640111346694+3'-UTR,CDS3.501174.14321K562MTPAP
chr6111345407111345490+3'-UTR,CDS3.2220811.67184K562UCHL5
chr6111346605111346767+3'-UTR,CDS,intron-Proximal3.3391020.53629K562UCHL5
chr6111329337111329397+3'-UTR,CDS,intron-Proximal4.176913.85435K562PRPF8
chr6111346606111346622+3'-UTR,CDS3.422593.57857HepG2BCLAF1
chr6111346699111346755+3'-UTR,CDS4.6189813.05811K562ZNF622
chr6111346621111346699+3'-UTR,CDS3.7131115.84930K562ZNF622
chr6111346632111346757+3'-UTR,CDS3.0198121.72198K562ZNF800
chr6111346634111346741+3'-UTR,CDS5.1850615.16835HepG2BCLAF1
chr6111346639111346740+3'-UTR,CDS3.320787.47194HepG2GRWD1
chr6111346705111346765+3'-UTR,CDS5.007138.32833K562LIN28B
chr6111336989111337035+3'-UTR,CDS3.267846.02234K562UCHL5
chr6111345511111345528+3'-UTR,CDS3.372823.28366HepG2BCLAF1
chr6111345417111345503+3'-UTR,CDS3.647908.51822K562GRWD1
chr6111346694111346753+3'-UTR,CDS4.486304.08803K562MTPAP
chr6111320980111321086+5'-UTR,CDS,intron-Proximal3.573686.43995K562PRPF8
chr6111318428111318461+5'-UTR,CDS4.922596.04243HepG2BCLAF1
chr6111310264111310311+5'-UTR,CDS,intron-Distal,intron-Proximal5.172065.17615K562AQR
chr6111306206111306259+5'-UTR,CDS,intron-Proximal4.194929.27494K562DDX3X
chr6111312937111313006+5'-UTR,CDS,intron-Proximal4.814015.68078HepG2AQR
chr6111310229111310287+5'-UTR,CDS,intron-Distal,intron-Proximal4.624755.25202HepG2AQR
chr6111303250111303333+5'-UTR,CDS,intron-Proximal3.5951510.49508K562DDX3X
chr6111306358111306450+intron-Distal,intron-Proximal4.809374.62947HepG2AQR
chr6111334351111334450+intron-Distal4.149293.90026K562KHSRP
chr6111306387111306450+intron-Distal,intron-Proximal3.596845.28960K562AQR
chr6111306377111306470+intron-Distal,intron-Proximal3.182234.07440K562PRPF8
chr6111306344111306375+intron-Proximal4.492113.62536K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RPF2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RPF2 is not available on ENCORE database.

  • 120 RBPs can affect the levels of RPF2.  








The Knockdown/knockout RNA-Seq assay for RPF2 is not available on ENCORE database.





120 RBPs can affect the gene expression of RPF2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RPF2ENSG00000197498.8753.490301015.73000-0.430902.215401.36860HepG2ABCF1
RPF2ENSG00000197498.8538.28730702.20310-0.383502.380501.45300HepG2ADAR
RPF2ENSG00000197498.8508.79910696.77290-0.453604.591603.62260HepG2AKAP8L
RPF2ENSG00000197498.8833.372701067.14760-0.356703.780603.00080HepG2AUH
RPF2ENSG00000197498.8340.29780662.20080-0.960508.366706.91290HepG2BCLAF1
RPF2ENSG00000197498.81348.090001629.70270-0.273701.827301.33170HepG2BOP1
RPF2ENSG00000197498.81304.11660987.320500.401403.951603.05360HepG2CALR
RPF2ENSG00000197498.8682.188501314.10660-0.945805.483504.08750HepG2CCAR1
RPF2ENSG00000197498.8643.38660951.09890-0.563904.727803.73160HepG2CIRBP
RPF2ENSG00000197498.8498.11320693.36040-0.477105.552704.67030HepG2CKAP4
RPF2ENSG00000197498.8422.98480711.23070-0.749704.478103.50110HepG2CNOT7
RPF2ENSG00000197498.8751.297301496.18690-0.9938010.422909.17180HepG2CPSF6
RPF2ENSG00000197498.8799.245401129.59340-0.499108.157206.98750HepG2DAZAP1
RPF2ENSG00000197498.8421.02550608.60950-0.531604.117003.30520HepG2DDX21
RPF2ENSG00000197498.8924.940501158.99020-0.325401.948801.41500HepG2DDX3X
RPF2ENSG00000197498.8780.65740995.57800-0.350801.965001.43640HepG2DDX6
RPF2ENSG00000197498.8427.64440663.51630-0.633707.388806.38290HepG2DKC1
RPF2ENSG00000197498.8449.15220707.07750-0.654707.996306.85130HepG2DNAJC21
RPF2ENSG00000197498.8464.30950700.84990-0.594008.257607.20580HepG2DNAJC2
RPF2ENSG00000197498.8430.82740702.40030-0.705206.089504.76840HepG2EEF2
RPF2ENSG00000197498.8429.97900957.09170-1.1544015.7333014.39140HepG2EIF2S1
RPF2ENSG00000197498.8594.397401057.70780-0.831408.363707.25510HepG2EIF4A3
RPF2ENSG00000197498.8757.440801029.80990-0.443202.342901.70750HepG2EIF4B
RPF2ENSG00000197498.8795.826801067.54400-0.423803.352402.46150HepG2EIF4G2
RPF2ENSG00000197498.8873.69640677.686100.366402.844801.99880HepG2EWSR1
RPF2ENSG00000197498.81335.851101025.721600.381002.555701.81290HepG2FIP1L1
RPF2ENSG00000197498.8372.64350578.92780-0.635605.490604.39300HepG2FUBP3
RPF2ENSG00000197498.8649.678901067.15580-0.716007.276506.19160HepG2FXR1
RPF2ENSG00000197498.8425.02240989.95770-1.2198016.8766015.30120HepG2G3BP1
RPF2ENSG00000197498.8606.533701050.94850-0.793008.808807.20520HepG2G3BP2
RPF2ENSG00000197498.8393.28660507.61390-0.368202.072901.30270HepG2GEMIN5
RPF2ENSG00000197498.8406.06010641.01310-0.658704.549603.23920HepG2GNB2L1
RPF2ENSG00000197498.8709.528801696.12970-1.2573020.8215019.24080HepG2GPKOW
RPF2ENSG00000197498.8336.46950713.85160-1.0851014.5154013.22450HepG2HNRNPA1
RPF2ENSG00000197498.8445.82880794.03330-0.832709.374508.15980HepG2HNRNPC
RPF2ENSG00000197498.8623.84420989.22860-0.6651010.521809.24010HepG2HNRNPF
RPF2ENSG00000197498.8735.427601002.38870-0.446803.439702.66390HepG2HNRNPK
RPF2ENSG00000197498.8756.004601028.96980-0.444706.318205.33890HepG2HNRNPL
RPF2ENSG00000197498.8844.626101618.64010-0.9384013.8890012.62450HepG2HNRNPLL
RPF2ENSG00000197498.8606.25670788.78330-0.379703.781403.08370HepG2HNRNPU
RPF2ENSG00000197498.8642.31550974.11280-0.600806.958605.85480HepG2IGF2BP1
RPF2ENSG00000197498.8455.905001006.27540-1.1422016.2079014.74040HepG2IGF2BP2
RPF2ENSG00000197498.8607.98500944.32570-0.635202.259401.37810HepG2IGF2BP3
RPF2ENSG00000197498.8691.092401012.13170-0.550403.524102.37440HepG2KHSRP
RPF2ENSG00000197498.8575.71540894.21950-0.635303.198601.85050HepG2KRR1
RPF2ENSG00000197498.8522.091001067.52830-1.0319013.4540012.05320HepG2MAGOH
RPF2ENSG00000197498.8777.385401650.61620-1.086307.914906.24440HepG2MTPAP
RPF2ENSG00000197498.8748.946501098.79820-0.553004.410303.61830HepG2NCBP2
RPF2ENSG00000197498.8809.344101120.10310-0.468805.405204.34610HepG2NOL12
RPF2ENSG00000197498.8640.06210978.56780-0.612505.285004.29800HepG2PABPC4
RPF2ENSG00000197498.8554.22200794.77350-0.520102.593201.58540HepG2PCBP2
RPF2ENSG00000197498.8345.65890471.49750-0.447903.076201.77620HepG2PKM
RPF2ENSG00000197498.81012.08480797.883600.343003.436502.58380HepG2PRPF4
RPF2ENSG00000197498.8363.38640578.15120-0.669904.283203.30260HepG2PRPF8
RPF2ENSG00000197498.8619.10550992.01400-0.6802011.1564010.20140HepG2PTBP1
RPF2ENSG00000197498.8738.163201069.23940-0.534604.115003.40460HepG2PUF60
RPF2ENSG00000197498.8704.579501134.21710-0.686909.842108.61780HepG2PUM2
RPF2ENSG00000197498.8393.18870706.40360-0.8453014.2055012.99990HepG2PUS1
RPF2ENSG00000197498.8684.916001074.35610-0.649508.996707.96710HepG2QKI
RPF2ENSG00000197498.81420.436801024.031100.472006.500205.78720HepG2RBM22
RPF2ENSG00000197498.8797.05820975.05460-0.290802.005101.42450HepG2RBM25
RPF2ENSG00000197498.8593.660101104.00870-0.8950018.0832016.93570HepG2NELFE
RPF2ENSG00000197498.8658.384901028.24790-0.6432010.155409.08950HepG2RECQL
RPF2ENSG00000197498.8515.50940698.31040-0.437902.625701.84450HepG2RPS2
RPF2ENSG00000197498.8518.62770713.97920-0.461202.420001.66920HepG2RPS3A
RPF2ENSG00000197498.8553.25680702.44320-0.344403.105402.43090HepG2SAFB2
RPF2ENSG00000197498.81063.952501602.18310-0.590605.553804.58120HepG2SF3B1
RPF2ENSG00000197498.8673.130701032.79810-0.617609.443308.45120HepG2SF3B4
RPF2ENSG00000197498.8777.456901025.24120-0.399105.128904.22060HepG2SLBP
RPF2ENSG00000197498.8912.249901648.08870-0.853302.571301.32490HepG2SNRNP200
RPF2ENSG00000197498.81102.536201782.69210-0.693204.958503.90080HepG2SNRNP70
RPF2ENSG00000197498.81370.273001156.624800.244402.691802.19450HepG2SRFBP1
RPF2ENSG00000197498.8898.939201078.02440-0.262102.396201.94780HepG2SRSF1
RPF2ENSG00000197498.8781.604201055.72240-0.433705.402804.56990HepG2SRSF5
RPF2ENSG00000197498.8727.01000971.86690-0.418804.599903.73600HepG2SRSF7
RPF2ENSG00000197498.8730.07880877.03600-0.264602.298401.78570HepG2SRSF9
RPF2ENSG00000197498.8646.237001004.25800-0.6360010.455409.58280HepG2SSB
RPF2ENSG00000197498.8974.172801200.64360-0.301603.532002.84530HepG2SUCLG1
RPF2ENSG00000197498.8356.98250745.84550-1.063007.882806.83560HepG2SUPV3L1
RPF2ENSG00000197498.8639.68700968.98900-0.599107.973307.10080HepG2TAF15
RPF2ENSG00000197498.81032.191701577.44700-0.611906.562605.51010HepG2TARDBP
RPF2ENSG00000197498.8599.33350890.34910-0.571006.269305.01560HepG2TIA1
RPF2ENSG00000197498.8369.37890766.43020-1.0531017.1005016.04980HepG2TIAL1
RPF2ENSG00000197498.8596.69390773.30320-0.374003.812003.17210HepG2TRIM56
RPF2ENSG00000197498.8700.366601044.60740-0.576806.392804.97860HepG2TUFM
RPF2ENSG00000197498.81166.95290877.634200.411003.077602.41730HepG2U2AF1
RPF2ENSG00000197498.8754.144901105.70430-0.552104.166303.12790HepG2UBE2L3
RPF2ENSG00000197498.8543.66440755.78060-0.475305.513604.57980HepG2UPF1
RPF2ENSG00000197498.8998.44110729.676300.452305.498504.70240HepG2UTP3
RPF2ENSG00000197498.8541.31420734.20110-0.439702.167501.51950HepG2XRN2
RPF2ENSG00000197498.82296.718901651.921300.475302.894101.68270K562AARS
RPF2ENSG00000197498.82396.169302989.21760-0.319002.027701.50980K562AQR
RPF2ENSG00000197498.81243.022801793.62500-0.5290010.274908.41070K562BCLAF1
RPF2ENSG00000197498.82360.785204145.80780-0.812402.447301.63140K562BOP1
RPF2ENSG00000197498.82537.182805218.28620-1.040303.486102.27030K562CNOT7
RPF2ENSG00000197498.82226.214904408.54110-0.985704.812603.78250K562CPSF6
RPF2ENSG00000197498.81061.520601360.73150-0.358303.752102.49630K562CSTF2
RPF2ENSG00000197498.81907.329101572.844100.278103.451101.95710K562DDX27
RPF2ENSG00000197498.8824.111201106.74850-0.425404.104202.80100K562DDX3X
RPF2ENSG00000197498.85902.179703450.165700.7745018.3048016.76370K562DDX47
RPF2ENSG00000197498.82939.633302203.199800.415906.642105.19450K562DKC1
RPF2ENSG00000197498.8995.510901215.60470-0.288202.973801.71190K562EIF2S1
RPF2ENSG00000197498.81712.327102615.67120-0.611208.831007.65690K562EIF2S2
RPF2ENSG00000197498.82298.71740984.050901.2239012.9657010.82140K562EIF3A
RPF2ENSG00000197498.82457.416001468.966000.7422010.268708.72960K562EIF3G
RPF2ENSG00000197498.82249.945304484.89310-0.995204.000502.96780K562FMR1
RPF2ENSG00000197498.82300.199203801.05060-0.724602.603201.71980K562FTO
RPF2ENSG00000197498.82074.622401202.453000.7868019.8532018.34650K562FXR1
RPF2ENSG00000197498.82152.914301523.879600.498403.605802.77400K562G3BP2
RPF2ENSG00000197498.82398.831804209.35810-0.811303.642602.73610K562GPKOW
RPF2ENSG00000197498.81234.329901808.30320-0.550904.110803.39810K562HNRNPC
RPF2ENSG00000197498.81177.373901614.47800-0.455503.317602.05950K562HNRNPF
RPF2ENSG00000197498.82472.054601590.528800.636104.199802.63750K562HNRNPK
RPF2ENSG00000197498.83970.913102733.483500.538602.190901.36630K562HNRNPM
RPF2ENSG00000197498.81125.001401591.81530-0.500703.838602.55260K562IGF2BP2
RPF2ENSG00000197498.81289.523101619.31930-0.328502.740001.55580K562IGF2BP3
RPF2ENSG00000197498.82474.902204108.68240-0.731302.898602.00040K562METAP2
RPF2ENSG00000197498.81583.952502176.77400-0.458706.890205.66020K562MTPAP
RPF2ENSG00000197498.82342.481001706.031600.457302.526801.69240K562NAA15
RPF2ENSG00000197498.81606.098602418.77210-0.590708.865007.63110K562NSUN2
RPF2ENSG00000197498.81925.225802497.75050-0.375602.920502.06480K562PCBP3
RPF2ENSG00000197498.81515.463501915.80580-0.338203.425202.52710K562POLR2G
RPF2ENSG00000197498.82050.285401340.699600.612705.197004.17000K562PRPF8
RPF2ENSG00000197498.81218.022401621.23890-0.412602.611301.73860K562PSIP1
RPF2ENSG00000197498.81959.053101625.866400.268802.345601.72710K562PTBP1
RPF2ENSG00000197498.83169.095804198.07870-0.405703.604602.51020K562PUM2
RPF2ENSG00000197498.82709.338901366.010800.9879013.3007011.48840K562RPS19
RPF2ENSG00000197498.82106.829801522.897300.468204.355703.06160K562RPS3
RPF2ENSG00000197498.82563.262301707.198700.586308.788006.92120K562SAFB
RPF2ENSG00000197498.82626.992801764.969900.573707.278804.94880K562SDAD1
RPF2ENSG00000197498.81664.040602386.44200-0.520208.722407.33000K562SF3A3
RPF2ENSG00000197498.82424.549104002.20610-0.723102.356101.46370K562SF3B1
RPF2ENSG00000197498.81960.244902444.93710-0.318803.924802.82990K562SRPK2
RPF2ENSG00000197498.81198.085201505.09390-0.329102.552001.55040K562SRSF5
RPF2ENSG00000197498.81487.659901764.99150-0.246602.604501.47360K562SRSF7
RPF2ENSG00000197498.83073.514901921.677700.677409.797008.24550K562SYNCRIP
RPF2ENSG00000197498.81203.561901613.19400-0.422603.399002.61160K562TARDBP
RPF2ENSG00000197498.81180.969901556.07200-0.397904.107703.08190K562TIA1
RPF2ENSG00000197498.81162.507401526.64700-0.393103.460402.21140K562TRA2A
RPF2ENSG00000197498.82085.308002508.94890-0.266803.022001.69290K562TROVE2
RPF2ENSG00000197498.82107.263601478.360600.511304.584103.10690K562U2AF1
RPF2ENSG00000197498.82260.392701526.423600.566309.517908.02590K562U2AF2
RPF2ENSG00000197498.83441.637004540.90490-0.399902.779101.37620K562UBE2L3
RPF2ENSG00000197498.81484.706902564.66100-0.7886011.219509.89280K562UPF1
RPF2ENSG00000197498.82132.377503725.13060-0.8048011.695809.44670K562UTP3
RPF2ENSG00000197498.81462.306502194.52280-0.585707.389105.91830K562WDR3
RPF2ENSG00000197498.83610.818702281.888700.6620024.0043021.88840K562WDR43
RPF2ENSG00000197498.82342.649903367.80130-0.523705.422804.14650K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RPF2 is not available on ENCORE database.





2 RBPs can affect the splicing of RPF2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERPF2ENSG00000197498.8chr6+111310190111310268111306183111306341111312949111312989-0.096000.000820.01785excludedK562SF3B4
SERPF2ENSG00000197498.8chr6+111310230111310268111306095111306341111312949111312989-0.337000.000000.00000excludedK562AQR
SERPF2ENSG00000197498.8chr6+111320913111320990111318385111318467111329240111329340-0.081000.000000.00000excludedK562AQR
SERPF2ENSG00000197498.8chr6+111336956111337059111329240111329340111345385111345530-0.079000.000000.00000excludedK562AQR
A3SSRPF2ENSG00000197498.8chr6+1113101901113102681113102301113102681113060951113063410.069000.000000.00000longerK562AQR
MXERPF2ENSG00000197498.8chr6+1113183851113184671113209131113209901113129491113129891113292401113293400.076000.009910.062891includedK562AQR
MXERPF2ENSG00000197498.8chr6+1113183381113184671113209131113209901113129491113129891113292401113293400.079000.000000.000001includedK562AQR
MXERPF2ENSG00000197498.8chr6+1113129491113129891113183851113184671113062081113063411113209131113209900.376000.000000.000001includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RPF2 is not avaliable on ENCORE database.