RCN3

General Information

Gene Name       : RCN3
Gene ID             : ENSG00000142552.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RCN3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RCN3ENSG00000142552.70.000.140.07ENCSR000AEF
HepG2RCN3ENSG00000142552.76.152.094.12ENCSR985KAT
K562RCN3ENSG00000142552.74.651.343.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RCN3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RCN3 RNA is bound by 15 proteins.  







eCLIP assay for RCN3 is not avaliable on ENCORE database.





15 proteins are bound to RCN3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr195004671150046806+3'-UTR,intron-Distal5.7255310.29649HepG2PABPN1
chr195004643050046475+3'-UTR,CDS,intron-Distal4.630853.72506HepG2PABPN1
chr195004679750046852+3'-UTR,intron-Distal4.412573.80315HepG2LSM11
chr195004653150046562+3'-UTR,intron-Distal4.518024.78834HepG2PABPN1
chr195004680650046850+3'-UTR,intron-Distal4.684303.72506HepG2PABPN1
chr195004660550046664+3'-UTR,intron-Distal3.354844.48398HepG2LSM11
chr195004678750046861+3'-UTR,intron-Distal6.2950110.19274K562PABPC4
chr195003168450031759+5'-UTR,CDS,intron-Proximal3.253803.95156HepG2U2AF1
chr195003166550031742+5'-UTR,CDS,intron-Proximal3.777698.60713HepG2SF3B4
chr195004237650042400+CDS,intron-Distal3.860864.77549HepG2PABPN1
chr195004631150046374+CDS,intron-Distal,intron-Proximal4.302663.31330K562UPF1
chr195004580950045856+CDS,intron-Distal,intron-Proximal5.5521810.01628HepG2PABPN1
chr195003744850037513+CDS,intron-Distal,intron-Proximal3.000194.41991HepG2SRSF1
chr195004589150045972+CDS,intron-Distal,intron-Proximal3.156203.60436HepG2PABPN1
chr195004041550040455+CDS4.057414.23295HepG2GRWD1
chr195004581050045831+CDS,intron-Distal3.478938.19289HepG2PPIG
chr195004583150045866+CDS,intron-Distal3.509898.43905HepG2PPIG
chr195004240050042435+CDS,intron-Distal5.221717.48781HepG2PABPN1
chr195004237550042403+CDS,intron-Distal,intron-Proximal3.305207.63733HepG2PPIG
chr195003191150031951+CDS4.443267.79455HepG2PPIG
chr195004582750045866+CDS,intron-Distal3.760343.34184HepG2GRWD1
chr195003745650037506+CDS,intron-Distal3.152283.80299HepG2GRWD1
chr195003745350037625+CDS,intron-Distal,intron-Proximal3.140754.25038K562SND1
chr195004240350042435+CDS,intron-Distal3.633969.51790HepG2PPIG
chr195004043750040504+CDS,intron-Proximal4.8146922.79582HepG2PRPF8
chr195004031750040398+CDS3.444764.24070HepG2GRWD1
chr195003133250031425+intron-Distal,intron-Proximal4.0544711.04858HepG2EFTUD2
chr195004336550043451+intron-Distal3.045703.94922HepG2PTBP1
chr195003679250036846+intron-Distal3.388904.25134HepG2RBFOX2
chr195003132850031385+intron-Proximal3.501474.23643HepG2XRN2
chr195003134550031382+intron-Proximal4.545378.74054HepG2PPIG
chr195003132550031414+intron-Proximal4.5547610.25704HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RCN3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RCN3 is not available on ENCORE database.

  • 114 RBPs can affect the levels of RCN3.  








The Knockdown/knockout RNA-Seq assay for RCN3 is not available on ENCORE database.





114 RBPs can affect the gene expression of RCN3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RCN3ENSG00000142552.3364.10370220.712600.722103.933302.82380HepG2ABCF1
RCN3ENSG00000142552.353.68390165.50730-1.6243011.8929010.82100HepG2ACO1
RCN3ENSG00000142552.3125.7296040.996301.616708.125206.52650HepG2ADAR
RCN3ENSG00000142552.324.51750101.90620-2.055404.325703.68100HepG2AKAP1
RCN3ENSG00000142552.3213.9332068.094901.651402.903001.94050HepG2BCCIP
RCN3ENSG00000142552.374.73470142.74260-0.933603.693903.01380HepG2BOP1
RCN3ENSG00000142552.397.82470165.44640-0.758103.755503.00360HepG2CKAP4
RCN3ENSG00000142552.391.0594042.043701.114803.781402.58720HepG2YBX3
RCN3ENSG00000142552.3158.89000104.204200.608502.244801.56670HepG2DAZAP1
RCN3ENSG00000142552.361.42080148.81030-1.276704.699503.43590HepG2DDX59
RCN3ENSG00000142552.3254.39640158.339200.684003.996403.21200HepG2DKC1
RCN3ENSG00000142552.3100.9782040.922501.303005.856804.96070HepG2DNAJC2
RCN3ENSG00000142552.3258.8511089.029401.5397011.3187010.05570HepG2EIF4A3
RCN3ENSG00000142552.3280.89100191.205300.554802.591701.53290HepG2ESF1
RCN3ENSG00000142552.3397.78560157.878201.3331016.2636015.00500HepG2ETF1
RCN3ENSG00000142552.326.5449082.38030-1.633902.400701.35620HepG2FUS
RCN3ENSG00000142552.3150.5892083.364800.853003.220202.50550HepG2G3BP1
RCN3ENSG00000142552.3208.9165088.566101.238007.119505.67770HepG2G3BP2
RCN3ENSG00000142552.3113.3309055.315601.034702.491901.53110HepG2GNB2L1
RCN3ENSG00000142552.389.50490157.99700-0.819904.231603.04120HepG2HDGF
RCN3ENSG00000142552.3126.5128041.672401.602007.194306.22520HepG2HNRNPA1
RCN3ENSG00000142552.3246.0026046.356202.407704.071503.24240HepG2HNRNPC
RCN3ENSG00000142552.3188.2889089.219801.077403.659702.84480HepG2HNRNPF
RCN3ENSG00000142552.329.7598084.52820-1.506102.642601.95950HepG2HNRNPK
RCN3ENSG00000142552.3169.2572087.853700.945903.839002.99690HepG2IGF2BP1
RCN3ENSG00000142552.3150.3253084.721200.827202.942702.25000HepG2IGF2BP2
RCN3ENSG00000142552.3100.1737047.037401.090504.426303.51840HepG2ILF2
RCN3ENSG00000142552.3205.3785085.247501.268504.096302.85650HepG2KHSRP
RCN3ENSG00000142552.3320.1763089.951301.8316017.3973015.82630HepG2MAGOH
RCN3ENSG00000142552.3252.52370144.585600.804403.309702.24250HepG2MTPAP
RCN3ENSG00000142552.3155.3536092.557800.747002.540701.93210HepG2NCBP2
RCN3ENSG00000142552.3169.9171070.715701.264605.497903.51270HepG2NOLC1
RCN3ENSG00000142552.3209.76730125.699200.738703.100802.30980HepG2NSUN2
RCN3ENSG00000142552.3134.9647093.602300.527901.828201.31770HepG2PCBP1
RCN3ENSG00000142552.3181.2641041.071802.1418015.6288013.95760HepG2PPIL4
RCN3ENSG00000142552.315.9974051.57930-1.689002.246201.51560HepG2PRPF8
RCN3ENSG00000142552.38.0502075.17910-3.223204.910603.98620HepG2RAVER1
RCN3ENSG00000142552.3142.84880272.36080-0.931004.213703.18130HepG2RBM15
RCN3ENSG00000142552.3108.8455053.081801.035902.607701.58030HepG2RCC2
RCN3ENSG00000142552.3143.3482073.956500.954702.440301.55260HepG2RPS10
RCN3ENSG00000142552.3167.3472037.505102.1576013.1802011.48670HepG2RPS3A
RCN3ENSG00000142552.395.0674041.007101.213004.628103.83000HepG2SAFB2
RCN3ENSG00000142552.379.5558035.315201.171602.750401.44400HepG2SART3
RCN3ENSG00000142552.3172.24640375.61090-1.124807.948906.76450HepG2SF3A3
RCN3ENSG00000142552.3175.8307094.540400.895104.584303.71640HepG2SLBP
RCN3ENSG00000142552.359.22460156.12010-1.398405.553004.43520HepG2SNRNP70
RCN3ENSG00000142552.345.64420149.03450-1.7071010.762009.94950HepG2SRFBP1
RCN3ENSG00000142552.324.87190103.50230-2.057108.933708.19210HepG2SRSF1
RCN3ENSG00000142552.375.85780150.98170-0.993003.356802.24380HepG2SRSF3
RCN3ENSG00000142552.3207.7170097.362501.093107.084906.14710HepG2SRSF5
RCN3ENSG00000142552.338.1260084.21010-1.143202.906002.34350HepG2SRSF9
RCN3ENSG00000142552.3357.95350129.390901.4679019.2871018.19480HepG2SSB
RCN3ENSG00000142552.386.8667032.655101.411403.207702.01600HepG2STIP1
RCN3ENSG00000142552.339.6948093.04940-1.229004.176603.50910HepG2TAF15
RCN3ENSG00000142552.3124.4871044.733001.476507.249206.50930HepG2TIAL1
RCN3ENSG00000142552.3139.6441045.146501.6290010.259109.27800HepG2TRIM56
RCN3ENSG00000142552.3230.6162096.331901.259308.437906.77930HepG2TUFM
RCN3ENSG00000142552.3100.97170190.66120-0.917103.979403.23200HepG2U2AF1
RCN3ENSG00000142552.375.2831039.350900.935801.962801.32360HepG2UCHL5
RCN3ENSG00000142552.3478.39320333.108800.522104.592003.72950HepG2UPF1
RCN3ENSG00000142552.3156.3835060.961601.359004.153902.91170HepG2UPF2
RCN3ENSG00000142552.3218.59790321.60440-0.557003.573802.90840HepG2UTP3
RCN3ENSG00000142552.3126.3267033.598301.910609.907907.86910HepG2XPO5
RCN3ENSG00000142552.3294.3886065.601202.1658016.5911014.84520HepG2XRN2
RCN3ENSG00000142552.3217.22740366.35680-0.754007.359306.57840HepG2ZNF622
RCN3ENSG00000142552.3233.91870116.351701.007405.972204.17570K562ABCF1
RCN3ENSG00000142552.3654.73410314.319501.0586011.5763010.50960K562AGGF1
RCN3ENSG00000142552.3323.19370223.447600.532403.510501.78670K562AKAP1
RCN3ENSG00000142552.3702.84200345.461301.0246010.441008.20420K562AKAP8
RCN3ENSG00000142552.31096.33220327.081301.744908.443007.23970K562AKAP8L
RCN3ENSG00000142552.3110.20890223.87370-1.022402.857801.59730K562APOBEC3C
RCN3ENSG00000142552.3994.71800343.220401.5351029.4695026.30270K562ATP5C1
RCN3ENSG00000142552.3134.3705056.814001.241803.623702.07580K562BCCIP
RCN3ENSG00000142552.3176.2869054.916101.6825011.426909.45600K562BCLAF1
RCN3ENSG00000142552.3229.45760135.808100.756603.432002.23240K562CCAR1
RCN3ENSG00000142552.3764.08510375.571801.024504.048802.58260K562CCDC124
RCN3ENSG00000142552.3161.13140255.97180-0.667702.575501.55860K562CNOT7
RCN3ENSG00000142552.3411.96140253.350700.701303.068701.89680K562CPEB4
RCN3ENSG00000142552.3137.4305041.662101.721808.738406.74280K562CSTF2
RCN3ENSG00000142552.3313.28230223.471900.487303.059401.78370K562DDX21
RCN3ENSG00000142552.396.7019048.130101.006502.827801.49300K562DDX27
RCN3ENSG00000142552.3336.50700226.385200.571803.557702.35570K562DDX3X
RCN3ENSG00000142552.3131.02460262.02330-0.999903.976403.21470K562DDX47
RCN3ENSG00000142552.3493.21230229.516601.1035015.0173011.95500K562DDX6
RCN3ENSG00000142552.3612.81790351.852400.800405.919904.57110K562DKC1
RCN3ENSG00000142552.337.0223075.41050-1.026401.969101.34380K562EIF2S2
RCN3ENSG00000142552.3334.84580212.972100.652704.942703.33300K562EIF4B
RCN3ENSG00000142552.3210.2718099.507801.079307.130505.05870K562EXOSC5
RCN3ENSG00000142552.340.54690245.95170-2.6007029.5951027.75080K562FXR1
RCN3ENSG00000142552.38.8758054.38420-2.615204.604903.64090K562G3BP2
RCN3ENSG00000142552.3248.97210123.081001.016306.384805.18150K562GPKOW
RCN3ENSG00000142552.3165.84110100.456100.723102.300501.60790K562GRSF1
RCN3ENSG00000142552.337.74970167.07210-2.145903.441902.78660K562HNRNPC
RCN3ENSG00000142552.336.19220101.92690-1.493805.690903.85120K562HNRNPK
RCN3ENSG00000142552.3348.26000237.599200.551503.721902.68450K562HNRNPU
RCN3ENSG00000142552.3292.96220102.076001.5210011.988509.39680K562IGF2BP2
RCN3ENSG00000142552.3233.54630103.817801.169609.022606.72330K562IGF2BP3
RCN3ENSG00000142552.3716.79230347.053301.0463011.672709.60580K562KIF1C
RCN3ENSG00000142552.3651.67760332.265500.971707.903805.70270K562MAK16
RCN3ENSG00000142552.3977.96380388.795901.3307018.4797015.88990K562MBNL1
RCN3ENSG00000142552.3505.73910272.523200.891904.428203.23270K562NAA15
RCN3ENSG00000142552.3147.3284055.841401.399504.922103.06110K562NONO
RCN3ENSG00000142552.352.3097095.43120-0.867402.395701.48840K562PCBP2
RCN3ENSG00000142552.375.04510126.57360-0.754102.241401.49400K562PCBP3
RCN3ENSG00000142552.353.5467097.08720-0.858502.699901.90980K562POLR2G
RCN3ENSG00000142552.3241.7423094.995001.3474010.619608.71400K562PPIG
RCN3ENSG00000142552.3664.21310317.518101.064705.304403.10320K562PPP1R8
RCN3ENSG00000142552.3336.20410149.835501.165905.615104.25670K562PSIP1
RCN3ENSG00000142552.3839.05550324.248901.371608.005907.12920K562PUS1
RCN3ENSG00000142552.3944.38590316.036201.5792021.3639019.66060K562RBM15
RCN3ENSG00000142552.354.34300105.14770-0.952303.367302.14790K562NELFE
RCN3ENSG00000142552.3429.92590233.186800.882504.902202.76200K562SBDS
RCN3ENSG00000142552.365.51000117.05920-0.837502.513801.58850K562SF3B1
RCN3ENSG00000142552.3228.73060149.540400.613003.010101.68720K562SLBP
RCN3ENSG00000142552.3342.84850177.738900.947704.723202.06500K562SMNDC1
RCN3ENSG00000142552.3274.02860129.747301.078502.800501.76890K562SRFBP1
RCN3ENSG00000142552.3130.9502055.000301.251405.067202.77840K562SRP68
RCN3ENSG00000142552.331.40020102.16340-1.702007.076905.95440K562SRSF1
RCN3ENSG00000142552.3222.42370146.388300.603402.465801.47950K562SRSF4
RCN3ENSG00000142552.3215.0458096.490701.156107.194905.38960K562SRSF5
RCN3ENSG00000142552.351.4749097.37970-0.919802.977302.12200K562SYNCRIP
RCN3ENSG00000142552.3241.3541099.734101.274909.884208.22160K562TIA1
RCN3ENSG00000142552.3207.7997097.879201.086006.339604.52160K562TRA2A
RCN3ENSG00000142552.3506.22590153.285501.7235012.244809.95830K562TRIM56
RCN3ENSG00000142552.3186.2900097.791700.929704.270702.43850K562TRIP6
RCN3ENSG00000142552.3429.43540301.064100.512303.094201.74950K562TROVE2
RCN3ENSG00000142552.322.5926054.35570-1.266602.210401.49220K562U2AF2
RCN3ENSG00000142552.3484.11230295.103500.714004.548203.65090K562UPF1
RCN3ENSG00000142552.3582.24790328.882100.824004.501602.70280K562UTP18
RCN3ENSG00000142552.3131.8677057.438301.198904.757203.01030K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RCN3 is not available on ENCORE database.





3 RBPs can affect the splicing of RCN3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERCN3ENSG00000142552.3chr19+500314885003163850030874500313155003172350031971-0.685000.000530.09714excludedHepG2DKC1
SERCN3ENSG00000142552.3chr19+500423755004243650040289500404625004580950046009-0.196000.006780.08774excludedK562HNRNPC
A3SSRCN3ENSG00000142552.3chr19+5004226450042436500423755004243650040289500404620.083000.004730.02752longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RCN3 is not avaliable on ENCORE database.