RAB5C

General Information

Gene Name       : RAB5C
Gene ID             : ENSG00000108774.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RAB5C)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAB5CENSG00000108774.1425.7554.9140.33ENCSR000AEF
HepG2RAB5CENSG00000108774.14218.26152.04185.15ENCSR985KAT
K562RAB5CENSG00000108774.14119.54111.53115.53ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAB5C is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAB5C RNA is bound by 26 proteins.  







eCLIP assay for RAB5C is not avaliable on ENCORE database.





26 proteins are bound to RAB5C RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174027701040277089-3'-UTR,intron-Distal4.2975912.07193HepG2FUBP3
chr174027761240277655-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.207233.27226HepG2IGF2BP3
chr174027748640277561-3'-UTR,intron-Distal3.7555211.53879HepG2PCBP2
chr174027764240277660-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.8406213.33666K562PABPC4
chr174027715740277218-3'-UTR,intron-Distal4.9172013.87936K562IGF2BP2
chr174027724940277291-3'-UTR,intron-Distal3.310803.10464K562IGF2BP2
chr174027705840277109-3'-UTR,intron-Distal3.309417.69244K562FAM120A
chr174027731740277372-3'-UTR,intron-Distal3.196043.92517K562IGF2BP2
chr174027737940277437-3'-UTR,intron-Distal3.821236.74427K562IGF2BP1
chr174027700740277056-3'-UTR,intron-Distal4.343998.11182K562IGF2BP1
chr174027715240277224-3'-UTR,intron-Distal3.955984.92519HepG2IGF2BP1
chr174027759940277662-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.8678617.63117K562PUM2
chr174027738440277451-3'-UTR,intron-Distal3.197686.63950K562IGF2BP2
chr174027738040277436-3'-UTR,intron-Distal3.497075.73561HepG2IGF2BP1
chr174027726040277306-3'-UTR,intron-Distal4.010183.31330K562UPF1
chr174027737740277448-3'-UTR,intron-Distal3.763235.11392HepG2IGF2BP3
chr174027726340277440-3'-UTR,intron-Distal4.997246.71037HepG2UPF1
chr174027769240277739-3'-UTR,5'-UTR,intron-Distal4.4675612.71857K562YBX3
chr174027726440277289-3'-UTR,intron-Distal3.062216.98725K562YBX3
chr174027714740277223-3'-UTR,intron-Distal3.450766.57140HepG2PCBP2
chr174027700940277072-3'-UTR,intron-Distal5.1446913.04183K562PABPC4
chr174027775540277803-3'-UTR,5'-UTR,intron-Distal3.661873.81620HepG2LARP4
chr174027760240277661-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.625946.35062K562IGF2BP1
chr174027700940277064-3'-UTR,intron-Distal3.259313.53952HepG2KHSRP
chr174027761940277642-3'-UTR,intron-Distal,intron-Proximal3.9027516.02177K562PABPC4
chr174027700140277053-3'-UTR,intron-Distal5.155359.14311K562PUM2
chr174027744840277555-3'-UTR,intron-Distal3.633984.21068HepG2IGF2BP3
chr174030693240306999-5'-UTR,intron-Distal,intron-Proximal3.693197.91814HepG2DDX3X
chr174030692240306985-5'-UTR,intron-Distal,intron-Proximal5.121147.13477K562DDX3X
chr174030690140307004-5'-UTR,intron-Distal,intron-Proximal3.788453.01533HepG2SRSF1
chr174030690940306932-5'-UTR,intron-Distal3.856523.76880HepG2DDX3X
chr174027780340277853-CDS,intron-Distal3.078275.34378K562YBX3
chr174028230940282374-CDS,intron-Distal,intron-Proximal4.077363.49905HepG2PPIG
chr174028229840282381-CDS,intron-Distal,intron-Proximal3.5480611.42172HepG2PRPF8
chr174028024140280303-CDS,intron-Distal,intron-Proximal3.205183.05460HepG2PPIG
chr174028023740280308-CDS,intron-Distal,intron-Proximal3.4195210.20548HepG2PRPF8
chr174028236440282418-CDS,intron-Distal4.6822211.17637K562YBX3
chr174027787240277916-CDS,intron-Distal,intron-Proximal3.129845.78926K562YBX3
chr174028069940280716-CDS,intron-Distal,intron-Proximal5.3024911.63893K562YBX3
chr174028241840282464-CDS,intron-Distal4.3044714.27079K562YBX3
chr174028067540280699-CDS,intron-Distal,intron-Proximal4.4449910.75300K562YBX3
chr174028072540280744-CDS,intron-Distal,intron-Proximal3.909843.04254K562UCHL5
chr174028078240280821-CDS,intron-Distal,intron-Proximal4.114913.44423K562BUD13
chr174028240340282446-CDS,intron-Distal4.073443.11282HepG2G3BP1
chr174028072940280757-CDS,intron-Distal,intron-Proximal3.441843.60157HepG2GRWD1
chr174028235440282364-CDS,intron-Distal,intron-Proximal3.269223.69775K562YBX3
chr174028235240282403-CDS,intron-Distal,intron-Proximal3.236464.18458HepG2G3BP1
chr174029236540292417-intron-Distal3.238363.39857HepG2HNRNPM
chr174028020740280268-intron-Distal,intron-Proximal5.170655.96317HepG2EFTUD2
chr174028040540280462-intron-Distal,intron-Proximal5.6564214.41773HepG2SF3A3
chr174029897640299063-intron-Distal7.0330120.82570K562PTBP1
chr174027931440279380-intron-Distal4.414545.04993HepG2QKI
chr174028019740280268-intron-Distal,intron-Proximal3.646915.66421K562PRPF8
chr174029897940299077-intron-Distal5.0225215.23552HepG2PTBP1
chr174030215540302305-intron-Distal3.642335.31375HepG2ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAB5C is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAB5C is not available on ENCORE database.

  • 101 RBPs can affect the levels of RAB5C.  








The Knockdown/knockout RNA-Seq assay for RAB5C is not available on ENCORE database.





101 RBPs can affect the gene expression of RAB5C :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAB5CENSG00000108774.102553.711902251.735400.181502.154701.60370HepG2ACO1
RAB5CENSG00000108774.101526.931201984.53370-0.378203.150402.09090HepG2ADAR
RAB5CENSG00000108774.103414.898302493.807300.453403.827502.60770HepG2AKAP8
RAB5CENSG00000108774.101839.294102526.96150-0.458304.235103.27230HepG2ASCC1
RAB5CENSG00000108774.103754.019403201.799500.229503.122902.40020HepG2AUH
RAB5CENSG00000108774.103535.116002400.831800.558106.465505.31730HepG2CIRBP
RAB5CENSG00000108774.102735.867502250.946300.281405.055804.20660HepG2CKAP4
RAB5CENSG00000108774.101049.916401400.78000-0.416001.980701.33860HepG2CNOT7
RAB5CENSG00000108774.102088.618703820.22490-0.8711016.0391014.55170HepG2CPSF6
RAB5CENSG00000108774.102646.801902035.117900.379005.759304.28910HepG2YBX3
RAB5CENSG00000108774.101290.342901814.12780-0.491502.766401.41200HepG2CSTF2T
RAB5CENSG00000108774.103371.073502722.436200.308204.879704.06980HepG2CELF1
RAB5CENSG00000108774.102631.055302082.394800.337306.514705.31620HepG2DDX19B
RAB5CENSG00000108774.102438.911202037.949700.259002.817001.64770HepG2DDX1
RAB5CENSG00000108774.102909.954601953.559900.574808.204607.10170HepG2DDX21
RAB5CENSG00000108774.101418.566601912.43860-0.431005.043203.80190HepG2DDX24
RAB5CENSG00000108774.102499.204501998.322400.322604.373103.50560HepG2DNAJC21
RAB5CENSG00000108774.102448.214201980.692500.305605.603604.72250HepG2DNAJC2
RAB5CENSG00000108774.103409.952402190.430400.638406.944105.55320HepG2EEF2
RAB5CENSG00000108774.101268.454601799.55840-0.504603.674502.38870HepG2AGO1
RAB5CENSG00000108774.102348.652201778.020700.401503.296302.31620HepG2EIF3D
RAB5CENSG00000108774.102335.276602887.90920-0.306404.339203.33400HepG2EIF4G1
RAB5CENSG00000108774.104235.732203676.098800.204302.515001.93760HepG2ETF1
RAB5CENSG00000108774.103116.443302200.081700.502207.174005.83440HepG2EWSR1
RAB5CENSG00000108774.102364.828703826.66930-0.694402.940601.89190HepG2FTO
RAB5CENSG00000108774.103463.854102694.297300.362402.928802.21580HepG2FXR1
RAB5CENSG00000108774.101954.838302498.82420-0.354202.540701.90120HepG2G3BP1
RAB5CENSG00000108774.102667.746901583.062000.7528011.159709.43710HepG2GEMIN5
RAB5CENSG00000108774.103228.012804330.65920-0.423903.615502.89230HepG2GPKOW
RAB5CENSG00000108774.103150.363502017.467000.6429010.518909.38150HepG2HNRNPA1
RAB5CENSG00000108774.103472.217604021.88100-0.212002.995602.25170HepG2HNRNPF
RAB5CENSG00000108774.103726.746102539.811100.553105.739904.80170HepG2IGF2BP2
RAB5CENSG00000108774.102860.124602277.081200.328807.487606.34500HepG2ILF2
RAB5CENSG00000108774.105627.974704286.746800.392602.621801.81410HepG2LARP4
RAB5CENSG00000108774.104734.675503377.091700.487407.035205.80380HepG2MSI2
RAB5CENSG00000108774.102980.576104214.63620-0.499803.055302.03390HepG2MTPAP
RAB5CENSG00000108774.102159.420801280.482000.753905.042603.81320HepG2PABPC1
RAB5CENSG00000108774.102601.295802206.547000.237302.949302.07810HepG2PARN
RAB5CENSG00000108774.103472.416702770.678700.325603.519102.85760HepG2PUF60
RAB5CENSG00000108774.103894.416902941.300000.4049012.6259011.55470HepG2PUM1
RAB5CENSG00000108774.103799.587302939.088000.370403.504602.75360HepG2PUM2
RAB5CENSG00000108774.103022.316102293.494700.398008.777207.78260HepG2PUS1
RAB5CENSG00000108774.102459.783202937.47680-0.256002.815702.18630HepG2QKI
RAB5CENSG00000108774.103573.617201625.442901.136503.926601.73290HepG2RBM17
RAB5CENSG00000108774.103821.094303072.537400.314503.349302.79460HepG2RBM22
RAB5CENSG00000108774.102216.584102665.91740-0.266302.430501.79500HepG2RBM25
RAB5CENSG00000108774.102496.281901672.567100.577605.591304.07500HepG2RCC2
RAB5CENSG00000108774.102029.921502811.23070-0.4698010.296509.22400HepG2RECQL
RAB5CENSG00000108774.103517.807001730.217101.0236026.8663025.27620HepG2RPS19
RAB5CENSG00000108774.102582.932701899.456400.443303.850302.91100HepG2RPS2
RAB5CENSG00000108774.102448.263301985.222600.302405.127604.29870HepG2SAFB2
RAB5CENSG00000108774.103193.636901571.571201.022903.412801.86780HepG2SF1
RAB5CENSG00000108774.106101.233403419.741800.835109.228707.94040HepG2SF3A3
RAB5CENSG00000108774.102881.133004090.74970-0.505706.387405.35210HepG2SF3B1
RAB5CENSG00000108774.101996.130202315.09970-0.213903.076002.40220HepG2SMN1
RAB5CENSG00000108774.102772.173601402.833300.982603.401101.91140HepG2SNRNP200
RAB5CENSG00000108774.102048.050704551.64810-1.1521013.8045012.07960HepG2SNRNP70
RAB5CENSG00000108774.101511.110602070.74010-0.454504.280502.32610HepG2SRP68
RAB5CENSG00000108774.103323.237802947.442300.173001.994201.57470HepG2SRSF1
RAB5CENSG00000108774.103144.469503951.42490-0.329606.393005.40530HepG2SRSF7
RAB5CENSG00000108774.101740.091002397.87660-0.4626010.192609.24990HepG2SRSF9
RAB5CENSG00000108774.103817.935403111.212700.295203.115002.46250HepG2SUCLG1
RAB5CENSG00000108774.101335.215102649.19650-0.9885031.2867029.66700HepG2TAF15
RAB5CENSG00000108774.101978.512502434.33510-0.299103.108402.22780HepG2TIA1
RAB5CENSG00000108774.102871.605302166.091200.406705.794905.12190HepG2TIAL1
RAB5CENSG00000108774.102862.733202185.475800.389307.673906.81210HepG2TRIM56
RAB5CENSG00000108774.103406.231202707.002700.331403.913302.85090HepG2TUFM
RAB5CENSG00000108774.105257.727703569.719200.558507.030706.03910HepG2U2AF1
RAB5CENSG00000108774.103822.346401634.064801.225904.746903.43020HepG2U2AF2
RAB5CENSG00000108774.104481.513002928.041000.6140021.4466020.01150HepG2UTP3
RAB5CENSG00000108774.102446.102302927.32520-0.259104.447203.62710HepG2ZC3H8
RAB5CENSG00000108774.105141.741003335.488200.6243017.0179015.94860HepG2ZNF622
RAB5CENSG00000108774.102901.890201775.254000.7089021.1274019.67290K562AGGF1
RAB5CENSG00000108774.102717.473901950.603700.478205.541604.03350K562AKAP8
RAB5CENSG00000108774.103745.334702096.030500.8373015.9106014.66010K562AQR
RAB5CENSG00000108774.101942.531602348.17590-0.273602.542401.78960K562CPSF6
RAB5CENSG00000108774.103126.113503897.10700-0.318003.606502.49170K562CELF1
RAB5CENSG00000108774.101451.632701171.721300.308903.545602.02570K562DDX27
RAB5CENSG00000108774.101191.42770965.682500.303002.397801.43100K562DDX3X
RAB5CENSG00000108774.102842.990601987.923100.516009.935808.06450K562DKC1
RAB5CENSG00000108774.101732.978301229.778300.494804.688203.48470K562EFTUD2
RAB5CENSG00000108774.101821.527301316.525800.468302.983101.90560K562EIF3D
RAB5CENSG00000108774.101168.28030708.056200.7224012.2038010.50880K562EIF3G
RAB5CENSG00000108774.101419.855001008.878200.492905.147804.02640K562EIF4A3
RAB5CENSG00000108774.101168.74340908.528900.363303.680402.31500K562EIF4B
RAB5CENSG00000108774.101214.83480880.634200.464005.250703.36340K562EWSR1
RAB5CENSG00000108774.103184.764502414.325700.399504.108303.06130K562FIP1L1
RAB5CENSG00000108774.101260.506201606.65150-0.350102.417101.37550K562FKBP4
RAB5CENSG00000108774.102221.199701049.187201.0820036.0890034.02370K562FXR1
RAB5CENSG00000108774.10291.10660595.71690-1.033109.014407.58620K562G3BP2
RAB5CENSG00000108774.102924.127701985.864800.558105.678504.28210K562HNRNPM
RAB5CENSG00000108774.101385.71750929.516500.576002.870901.82170K562IGF2BP2
RAB5CENSG00000108774.102921.957202196.188400.411804.510403.29130K562MBNL1
RAB5CENSG00000108774.102148.743201539.359000.481103.274602.29980K562NAA15
RAB5CENSG00000108774.103312.926902337.754800.502902.818301.57270K562PABPC1
RAB5CENSG00000108774.102309.423401429.142000.692302.642501.67920K562PABPN1
RAB5CENSG00000108774.101195.73120868.281500.461603.233802.17560K562PCBP2
RAB5CENSG00000108774.102003.576902375.30330-0.245502.235901.51530K562POLR2G
RAB5CENSG00000108774.102220.620601196.720900.8918014.3843012.66140K562PRPF8
RAB5CENSG00000108774.101619.81070948.348700.772209.405208.23050K562PTBP1
RAB5CENSG00000108774.104247.873703458.582300.296502.791201.97200K562PUF60
RAB5CENSG00000108774.102501.793101832.147900.449302.640502.10650K562PUS1
RAB5CENSG00000108774.102274.416801784.959400.349501.855301.35220K562RBM15
RAB5CENSG00000108774.101535.83600908.892400.756709.587107.87450K562RBM22
RAB5CENSG00000108774.101974.715501513.940900.383204.281403.04430K562RCC2
RAB5CENSG00000108774.101694.812601218.853900.475503.551302.62360K562RPS19
RAB5CENSG00000108774.101578.313401042.719100.597905.232203.79300K562RPS3
RAB5CENSG00000108774.103026.039702116.709900.515507.270905.53480K562SAFB
RAB5CENSG00000108774.102384.961801306.764900.867903.621102.18360K562SF1
RAB5CENSG00000108774.10955.23890619.449200.624808.049406.54660K562SF3B4
RAB5CENSG00000108774.102421.788901501.084700.690002.850701.59980K562SNRNP200
RAB5CENSG00000108774.101869.939501435.182800.381703.552802.35070K562SRFBP1
RAB5CENSG00000108774.102314.404102825.40230-0.287805.306404.05990K562SRPK2
RAB5CENSG00000108774.101653.30890929.792600.8303010.890609.49530K562SRSF1
RAB5CENSG00000108774.101311.331201006.649600.381402.751801.70500K562SRSF4
RAB5CENSG00000108774.103052.645802382.604400.357404.493503.44130K562SYNCRIP
RAB5CENSG00000108774.101606.99200940.806800.772306.270405.16580K562TARDBP
RAB5CENSG00000108774.101254.58450907.568000.467003.230102.33630K562TIA1
RAB5CENSG00000108774.102264.502301695.570100.417304.538303.25870K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAB5C is not available on ENCORE database.





9 RBPs can affect the splicing of RAB5C :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERAB5CENSG00000108774.10chr17-402897794028989640282354402826084030691040307022-0.062000.000280.03748excludedK562FMR1
SERAB5CENSG00000108774.10chr17-402897794028989640282354402826084030691040307022-0.067000.000010.00015excludedHepG2U2AF2
SERAB5CENSG00000108774.10chr17-402897794028989640282354402826084030691040307022-0.069000.000010.00316excludedK562METAP2
SERAB5CENSG00000108774.10chr17-402897794028989640282354402826084030691040307022-0.053000.001050.04725excludedHepG2SFPQ
SERAB5CENSG00000108774.10chr17-402897794028989640282354402826084030691040307022-0.067000.000010.00544excludedK562GPKOW
SERAB5CENSG00000108774.10chr17-402897794028989640282354402826084030691040307022-0.062000.000000.00061excludedHepG2NOL12
SERAB5CENSG00000108774.10chr17-402897794028989640282354402826084030691040307022-0.061000.000470.05138excludedK562CPSF6
SERAB5CENSG00000108774.10chr17-4028977940289896402823544028260840306910403070220.111000.000060.00383includedHepG2HNRNPC
SERAB5CENSG00000108774.10chr17-4028977940289896402823544028260840306910403070220.093000.001800.03109includedK562HNRNPC
A3SSRAB5CENSG00000108774.10chr17-4027877240278979402787724027886640280278402804770.088000.000000.00000longerK562AQR
MXERAB5CENSG00000108774.10chr17-4028521640285384402897794028989640282354402826084030691040307022-0.250000.014430.084912includedK562AQR
MXERAB5CENSG00000108774.10chr17-4028521640285384402897794028989640282354402826084030691040307022-0.671000.000160.041242includedK562GPKOW

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RAB5C is not avaliable on ENCORE database.