PTBP3

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PTBP3	ENSG00000119314.15	42.77	38.60	40.69	ENCSR000AEF
HepG2	PTBP3	ENSG00000119314.15	16.12	30.74	23.43	ENCSR985KAT
K562	PTBP3	ENSG00000119314.15	43.56	45.76	44.66	ENCSR000AEO

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
RNA Bind-n-Seq	RBNS: PTBP3	ENCSR741ZPT	PTBP3	cell-free sample	Released

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
PTBP3	K562	shRNA			BGKLV25-41,BGKLV25-42	BGKLV25-1,BGKLV25-2	no AB,no AB	NotSatisfied	ENCODE3

GeneName	gene_aliases	Status	Project	Note
PTBP3	PTBP3		Released	ENCODE3

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PTBP3 is not avaliable on ENCORE database.

The binding motifs of PTBP3

Proteins bound to RNA

PTBP3 RNA is bound by 39 proteins.

eCLIP assay for PTBP3 is not avaliable on ENCORE database.

39 proteins are bound to PTBP3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	114982922	114982950	-	3'-UTR,intron-Distal	3.59322	13.99671	K562	FAM120A
chr9	114985088	114985153	-	3'-UTR,intron-Distal	3.42329	12.11228	K562	FAM120A
chr9	114986037	114986094	-	3'-UTR,intron-Distal	4.39579	21.34962	K562	IGF2BP1
chr9	114984815	114984845	-	3'-UTR,intron-Distal,intron-Proximal	4.41878	5.20806	K562	TIA1
chr9	114984349	114984405	-	3'-UTR,intron-Distal	3.74957	34.43156	K562	FAM120A
chr9	114982690	114982756	-	3'-UTR,intron-Distal	3.02745	3.20430	K562	LIN28B
chr9	114981446	114981466	-	3'-UTR,intron-Distal	3.62964	8.73537	K562	FAM120A
chr9	114982346	114982425	-	3'-UTR,intron-Distal	3.62446	46.11689	K562	FAM120A
chr9	114984687	114984722	-	3'-UTR,intron-Distal	3.62711	4.48983	K562	TIA1
chr9	114985597	114985689	-	3'-UTR,intron-Distal	3.99853	25.96341	K562	FAM120A
chr9	114984743	114984756	-	3'-UTR,intron-Distal	4.34099	10.51368	K562	IGF2BP1
chr9	114981148	114981182	-	3'-UTR,intron-Distal	5.50286	12.55471	K562	IGF2BP1
chr9	114981628	114981672	-	3'-UTR,intron-Distal	3.09711	5.41419	K562	PUM2
chr9	114984410	114984451	-	3'-UTR,intron-Distal,intron-Proximal	3.99012	10.77312	K562	TIA1
chr9	114981526	114981565	-	3'-UTR,intron-Distal	3.64534	12.86230	K562	FAM120A
chr9	114983042	114983074	-	3'-UTR,intron-Distal	3.75001	5.73713	K562	IGF2BP1
chr9	114980961	114981006	-	3'-UTR,intron-Distal	4.38481	9.23779	K562	IGF2BP1
chr9	114980968	114981025	-	3'-UTR,intron-Distal	3.13574	21.64917	K562	PUM2
chr9	114981119	114981155	-	3'-UTR,intron-Distal	3.12483	7.55057	K562	PUM2
chr9	114983097	114983142	-	3'-UTR,intron-Distal	3.62711	11.23035	K562	TIA1
chr9	114981077	114981098	-	3'-UTR,intron-Distal	3.22544	4.76534	K562	PUM2
chr9	114985360	114985387	-	3'-UTR,intron-Distal	3.20785	3.22514	K562	KHDRBS1
chr9	114984405	114984452	-	3'-UTR,intron-Distal,intron-Proximal	4.11998	20.77963	K562	FAM120A
chr9	114982553	114982597	-	3'-UTR,intron-Distal	3.03199	3.75909	HepG2	IGF2BP1
chr9	114985713	114985757	-	3'-UTR,intron-Distal	3.27088	16.30783	K562	FAM120A
chr9	114983885	114983907	-	3'-UTR,intron-Distal	3.16025	10.26099	K562	UPF1
chr9	114981755	114981805	-	3'-UTR,intron-Distal	3.51061	12.76170	K562	FAM120A
chr9	114983539	114983563	-	3'-UTR,intron-Distal	3.42118	6.96561	K562	IGF2BP1
chr9	114981775	114981808	-	3'-UTR,intron-Distal	3.97600	7.73013	K562	IGF2BP1
chr9	114985769	114985821	-	3'-UTR,intron-Distal	3.62123	26.39420	K562	FAM120A
chr9	114982286	114982346	-	3'-UTR,intron-Distal	3.83387	19.22473	K562	FAM120A
chr9	114985913	114985975	-	3'-UTR,intron-Distal	4.83938	400.00000	K562	FAM120A
chr9	114980824	114980884	-	3'-UTR,intron-Distal	4.08303	3.50219	HepG2	CSTF2
chr9	114981837	114981874	-	3'-UTR,intron-Distal	3.42512	7.49421	K562	IGF2BP1
chr9	114985821	114985852	-	3'-UTR,intron-Distal	4.31419	18.42346	K562	FAM120A
chr9	114984647	114984668	-	3'-UTR,intron-Distal	3.72886	4.76828	K562	IGF2BP1
chr9	114981368	114981426	-	3'-UTR,intron-Distal	4.00046	14.02927	K562	IGF2BP1
chr9	114984303	114984334	-	3'-UTR,intron-Distal	3.87190	17.66979	K562	FAM120A
chr9	114986094	114986119	-	3'-UTR,intron-Distal	4.48144	12.86436	K562	IGF2BP1
chr9	114985919	114985968	-	3'-UTR,intron-Distal	3.31017	10.92823	K562	TIA1
chr9	114983507	114983596	-	3'-UTR,intron-Distal	3.99588	25.49281	K562	TARDBP
chr9	114982463	114982484	-	3'-UTR,intron-Distal	4.56921	6.30939	K562	IGF2BP1
chr9	114984688	114984743	-	3'-UTR,intron-Distal	4.26067	19.98731	K562	IGF2BP1
chr9	114981444	114981471	-	3'-UTR,intron-Distal	3.30249	7.95235	K562	IGF2BP1
chr9	114981487	114981549	-	3'-UTR,intron-Distal	3.94285	17.43263	K562	IGF2BP1
chr9	115095765	115095799	-	5'-UTR,intron-Distal	3.81679	15.49805	K562	IGF2BP2
chr9	115095749	115095752	-	5'-UTR,CDS,intron-Distal	3.28649	5.03435	K562	IGF2BP2
chr9	115095274	115095295	-	5'-UTR,intron-Distal	4.39014	4.73785	K562	TIA1
chr9	115095849	115095862	-	5'-UTR,intron-Distal,intron-Proximal	3.36801	3.74671	K562	IGF2BP2
chr9	115095285	115095360	-	5'-UTR,intron-Distal,intron-Proximal	3.15881	7.90080	K562	GEMIN5
chr9	115095243	115095363	-	5'-UTR,intron-Distal,intron-Proximal	3.84934	4.06931	K562	XRN2
chr9	115095814	115095847	-	5'-UTR,intron-Distal,intron-Proximal	4.09145	9.12996	K562	IGF2BP2
chr9	115095127	115095217	-	5'-UTR,intron-Distal,intron-Proximal	3.56719	3.80158	K562	NONO
chr9	115095752	115095765	-	5'-UTR,CDS,intron-Distal	3.11565	4.87857	K562	IGF2BP2
chr9	115095862	115095892	-	5'-UTR,intron-Distal,intron-Proximal	4.04890	5.82984	K562	IGF2BP2
chr9	115060189	115060196	-	5'-UTR,CDS,intron-Distal	3.32036	5.28732	K562	IGF2BP2
chr9	115095271	115095374	-	5'-UTR,intron-Distal,intron-Proximal	4.03748	7.26345	HepG2	NKRF
chr9	115095799	115095812	-	5'-UTR,intron-Distal	4.64005	14.40811	K562	IGF2BP2
chr9	115095250	115095367	-	5'-UTR,intron-Distal,intron-Proximal	5.36336	18.50339	K562	NONO
chr9	115095232	115095267	-	5'-UTR,intron-Distal	3.85944	6.66403	K562	TIA1
chr9	115095747	115095853	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.16233	12.01462	K562	GEMIN5
chr9	114997150	114997175	-	CDS,intron-Distal	3.44698	9.01990	K562	LIN28B
chr9	115024714	115024744	-	CDS,intron-Distal,intron-Proximal	4.28265	7.48557	K562	IGF2BP1
chr9	114986414	114986496	-	CDS,intron-Distal,intron-Proximal	3.01646	3.90969	K562	GRWD1
chr9	114997127	114997150	-	CDS,intron-Distal	3.77990	12.91945	K562	LIN28B
chr9	114994420	114994486	-	CDS,intron-Distal	3.84264	14.58391	K562	IGF2BP1
chr9	115030381	115030393	-	CDS,intron-Distal	3.40675	12.34918	K562	YBX3
chr9	114990658	114990718	-	CDS,intron-Distal,intron-Proximal	3.31416	6.50801	HepG2	BCLAF1
chr9	114997108	114997159	-	CDS,intron-Distal	3.23404	5.66768	K562	IGF2BP2
chr9	115092699	115092766	-	CDS,intron-Distal,intron-Proximal	3.81500	3.65740	K562	U2AF2
chr9	115013229	115013266	-	CDS,intron-Distal	3.72978	8.92180	K562	IGF2BP2
chr9	115038122	115038169	-	CDS,intron-Distal,intron-Proximal	3.01685	5.55505	K562	DDX24
chr9	114993666	114993693	-	CDS,intron-Distal	4.55024	6.99270	K562	IGF2BP1
chr9	114990726	114990752	-	CDS,intron-Distal	5.02527	7.57269	K562	IGF2BP1
chr9	114994502	114994518	-	CDS,intron-Distal	4.40995	11.00029	K562	IGF2BP1
chr9	115030452	115030521	-	CDS,intron-Distal,intron-Proximal	3.67349	4.13013	K562	SF3B4
chr9	114994410	114994469	-	CDS,intron-Distal	4.07503	18.19191	K562	IGF2BP2
chr9	114994378	114994408	-	CDS,intron-Distal,intron-Proximal	5.87870	11.75764	K562	IGF2BP1
chr9	115024808	115024838	-	CDS,intron-Distal	4.74979	10.38043	K562	IGF2BP2
chr9	114989690	114989709	-	CDS,intron-Distal,intron-Proximal	4.84399	11.50645	K562	IGF2BP1
chr9	115030439	115030478	-	CDS,intron-Distal,intron-Proximal	3.15428	5.87296	K562	DDX24
chr9	115024755	115024808	-	CDS,intron-Distal,intron-Proximal	3.86731	7.83294	K562	IGF2BP2
chr9	115013173	115013263	-	CDS,intron-Distal,intron-Proximal	4.67700	9.08333	HepG2	PRPF8
chr9	114997100	114997107	-	CDS,intron-Distal	4.24059	8.96979	K562	IGF2BP1
chr9	115013208	115013283	-	CDS,intron-Distal,intron-Proximal	3.43454	5.10436	K562	FXR2
chr9	114997014	114997107	-	CDS,intron-Distal,intron-Proximal	3.20823	5.03211	K562	AQR
chr9	114986486	114986490	-	CDS,intron-Distal	5.84594	14.34960	K562	IGF2BP1
chr9	114990663	114990713	-	CDS,intron-Distal	3.01859	7.76940	K562	BUD13
chr9	115024817	115024879	-	CDS,intron-Distal	3.17629	8.39777	K562	IGF2BP1
chr9	114989767	114989897	-	CDS,intron-Distal	3.37277	4.41873	K562	ZNF800
chr9	114997107	114997158	-	CDS,intron-Distal	4.18937	14.27634	K562	IGF2BP1
chr9	115024779	115024880	-	CDS,intron-Distal,intron-Proximal	3.77187	3.27226	HepG2	IGF2BP3
chr9	115013232	115013274	-	CDS,intron-Distal	3.95069	7.21499	K562	IGF2BP1
chr9	114994469	114994517	-	CDS,intron-Distal	3.57250	7.96585	K562	IGF2BP2
chr9	115014957	115015030	-	CDS,intron-Distal,intron-Proximal	5.03048	16.14072	K562	IGF2BP1
chr9	115024838	115024880	-	CDS,intron-Distal,intron-Proximal	3.83570	11.86360	K562	IGF2BP2
chr9	114997168	114997176	-	CDS,intron-Distal	3.91311	3.39858	K562	IGF2BP2
chr9	114994379	114994398	-	CDS,intron-Distal	3.15962	3.90824	K562	YBX3
chr9	114997103	114997177	-	CDS,intron-Distal	4.52035	5.09622	HepG2	IGF2BP1
chr9	115024703	115024747	-	CDS,intron-Distal,intron-Proximal	4.00933	4.93978	HepG2	BCLAF1
chr9	115092722	115092848	-	CDS,intron-Distal,intron-Proximal	3.07030	5.37771	HepG2	PTBP1
chr9	114994399	114994507	-	CDS,intron-Distal	5.85622	13.29340	HepG2	IGF2BP1
chr9	114993659	114993666	-	CDS,intron-Distal,intron-Proximal	4.76682	5.80303	K562	IGF2BP1
chr9	114993671	114993734	-	CDS,intron-Distal,intron-Proximal	3.63916	11.01899	K562	SF3B4
chr9	114986423	114986486	-	CDS,intron-Distal	4.60606	18.04310	K562	IGF2BP1
chr9	115013214	115013232	-	CDS,intron-Distal	3.22696	4.13941	K562	IGF2BP1
chr9	115030393	115030435	-	CDS,intron-Distal	3.62120	18.03950	K562	YBX3
chr9	114994178	114994209	-	intron-Distal	5.67567	12.28789	HepG2	PTBP1
chr9	114998042	114998164	-	intron-Distal	4.08779	6.24904	HepG2	PTBP1
chr9	115061334	115061420	-	intron-Distal	4.73306	5.41654	K562	KHSRP
chr9	114995430	114995490	-	intron-Distal	4.36958	4.27660	K562	HNRNPL
chr9	114995490	114995563	-	intron-Distal	3.52218	6.65670	K562	HNRNPL
chr9	115085579	115085631	-	intron-Distal	4.04750	3.29248	HepG2	SUGP2
chr9	115001970	115002049	-	intron-Distal	4.50216	8.61988	K562	ILF3
chr9	114996495	114996598	-	intron-Distal	5.03682	7.91254	K562	RBFOX2
chr9	115052262	115052345	-	intron-Distal	3.49246	4.10408	K562	KHSRP
chr9	115002175	115002271	-	intron-Distal	5.00428	11.73060	K562	PTBP1
chr9	115056856	115057012	-	intron-Distal	4.13765	5.98773	K562	KHSRP
chr9	115001981	115002068	-	intron-Distal	3.97883	4.78196	HepG2	PTBP1
chr9	115079201	115079253	-	intron-Distal	3.32369	4.81055	HepG2	HNRNPC
chr9	115011650	115011759	-	intron-Distal	4.47210	4.78106	HepG2	PTBP1
chr9	115060309	115060396	-	intron-Distal	3.15675	3.96958	K562	KHSRP
chr9	115080579	115080641	-	intron-Distal	3.82780	5.95946	K562	KHSRP
chr9	114994129	114994178	-	intron-Distal	5.13905	6.76922	HepG2	PTBP1
chr9	114999282	114999350	-	intron-Distal	4.23400	4.22415	K562	PTBP1
chr9	114994111	114994187	-	intron-Distal	3.39018	7.00957	K562	PRPF8
chr9	115073077	115073178	-	intron-Distal	3.86097	3.04956	HepG2	HNRNPL
chr9	114990764	114990805	-	intron-Distal,intron-Proximal	4.53693	13.78274	K562	SF3B4
chr9	115002038	115002086	-	intron-Distal	4.73419	5.68967	HepG2	PCBP2
chr9	114994209	114994270	-	intron-Distal	3.78138	10.49428	HepG2	PTBP1
chr9	114998042	114998144	-	intron-Distal	3.18556	4.11384	K562	PTBP1
chr9	115001987	115002038	-	intron-Distal	4.46735	6.53456	HepG2	PCBP2
chr9	114994124	114994223	-	intron-Distal	5.40611	31.49024	K562	PTBP1
chr9	115042953	115043086	-	intron-Distal	4.40270	3.19026	HepG2	HNRNPL
chr9	115056388	115056441	-	intron-Distal	4.36035	4.76003	K562	KHSRP
chr9	115002549	115002638	-	intron-Distal	3.11152	3.81590	K562	HNRNPL
chr9	115002186	115002280	-	intron-Distal	3.22606	3.45178	K562	MATR3
chr9	114994223	114994266	-	intron-Distal	4.02335	8.54900	K562	PTBP1
chr9	115011646	115011760	-	intron-Distal	4.82538	10.02898	K562	PTBP1
chr9	115073167	115073234	-	intron-Distal	5.03947	6.40067	K562	PTBP1
chr9	115085150	115085225	-	intron-Distal	3.46575	4.33009	HepG2	SUGP2
chr9	115093321	115093441	-	intron-Distal	4.10169	5.80675	K562	EIF4G2
chr9	115095632	115095702	-	intron-Distal	3.55741	4.85046	K562	NONO
chr9	115001970	115002042	-	intron-Distal	4.18276	8.69724	K562	MATR3
chr9	114998041	114998173	-	intron-Distal	4.64678	3.47525	K562	MATR3
chr9	115082946	115083013	-	intron-Distal	4.43263	5.85485	K562	KHSRP
chr9	115002182	115002277	-	intron-Distal	3.05879	3.75642	K562	ILF3
chr9	115093324	115093382	-	intron-Distal	3.92317	3.46495	K562	TARDBP
chr9	115049222	115049334	-	intron-Distal	3.74118	3.54264	K562	SAFB2
chr9	114999280	114999355	-	intron-Distal	3.66136	3.89405	HepG2	PTBP1
chr9	115001989	115002035	-	intron-Distal	4.56833	7.56720	K562	PTBP1
chr9	114999961	115000035	-	intron-Distal	4.08873	4.28663	HepG2	SUGP2
chr9	115060033	115060083	-	intron-Distal,intron-Proximal	3.03717	3.17919	K562	KHSRP
chr9	115091645	115091698	-	intron-Distal	4.08226	4.28548	HepG2	HNRNPC
chr9	115014552	115014663	-	intron-Distal	3.98406	3.55640	HepG2	QKI
chr9	114994161	114994268	-	intron-Distal	5.52665	10.36056	K562	TIA1
chr9	115073071	115073142	-	intron-Distal	3.65662	3.14791	K562	HNRNPL
chr9	115061664	115061723	-	intron-Distal	3.26048	3.07751	K562	KHSRP
chr9	115093227	115093291	-	intron-Distal	3.60816	4.72639	K562	KHSRP
chr9	115028360	115028473	-	intron-Distal	4.62144	6.36545	HepG2	HNRNPL
chr9	114999304	114999367	-	intron-Distal	4.11323	3.47525	K562	MATR3
chr9	115070107	115070181	-	intron-Distal	4.07279	5.09344	HepG2	XPO5
chr9	115080641	115080710	-	intron-Distal	4.84268	7.17304	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for PTBP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PTBP3 is not available on ENCORE database.
122 RBPs can affect the levels of PTBP3.

The Knockdown/knockout RNA-Seq assay for PTBP3 is not available on ENCORE database.

122 RBPs can affect the gene expression of PTBP3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PTBP3	ENSG00000119314.11	2719.36020	2153.03420	0.33680	2.94670	1.84660	HepG2	AATF
PTBP3	ENSG00000119314.11	2327.44420	3166.37540	-0.44410	10.94880	9.90700	HepG2	ACO1
PTBP3	ENSG00000119314.11	2589.72400	3225.23330	-0.31660	2.27500	1.36970	HepG2	ADAR
PTBP3	ENSG00000119314.11	2834.10910	4531.34470	-0.67700	7.56930	6.73470	HepG2	AKAP1
PTBP3	ENSG00000119314.11	1797.06570	3181.40210	-0.82400	28.98600	26.90290	HepG2	AKAP8L
PTBP3	ENSG00000119314.11	2851.08770	3749.25850	-0.39510	3.47310	2.59340	HepG2	ASCC1
PTBP3	ENSG00000119314.11	1494.40730	2861.75780	-0.93730	12.53370	10.46630	HepG2	BCCIP
PTBP3	ENSG00000119314.11	1901.79400	2486.73070	-0.38690	2.73740	1.84230	HepG2	BCLAF1
PTBP3	ENSG00000119314.11	2304.24340	3417.87430	-0.56880	10.42570	9.07350	HepG2	CALR
PTBP3	ENSG00000119314.11	3700.02520	5250.64640	-0.50500	2.30900	1.42660	HepG2	CCAR1
PTBP3	ENSG00000119314.11	1630.81320	3165.86790	-0.95700	49.11760	47.13200	HepG2	CKAP4
PTBP3	ENSG00000119314.11	2610.81000	3307.40140	-0.34120	5.16900	3.77530	HepG2	YBX3
PTBP3	ENSG00000119314.11	2970.12570	3660.91240	-0.30170	4.74450	3.94440	HepG2	CELF1
PTBP3	ENSG00000119314.11	2905.14830	3936.84520	-0.43840	13.85300	12.40800	HepG2	DAZAP1
PTBP3	ENSG00000119314.11	2140.88610	2928.52660	-0.45200	11.46230	9.99640	HepG2	DDX19B
PTBP3	ENSG00000119314.11	2842.50120	3312.08070	-0.22060	2.39160	1.31780	HepG2	DDX1
PTBP3	ENSG00000119314.11	1298.21420	2376.91610	-0.87260	10.17280	8.96080	HepG2	DDX21
PTBP3	ENSG00000119314.11	2942.82920	2324.77960	0.34000	3.66060	2.59930	HepG2	DDX24
PTBP3	ENSG00000119314.11	1685.43810	2632.76410	-0.64350	5.08360	3.39860	HepG2	DDX27
PTBP3	ENSG00000119314.11	3126.77910	4340.58080	-0.47320	4.65580	3.86060	HepG2	DDX3X
PTBP3	ENSG00000119314.11	2142.42380	3728.89510	-0.79950	10.23270	9.12560	HepG2	DDX6
PTBP3	ENSG00000119314.11	2566.93020	3132.38460	-0.28720	2.51950	1.58320	HepG2	DHX30
PTBP3	ENSG00000119314.11	2393.98290	3029.40990	-0.33960	2.61160	1.95150	HepG2	DKC1
PTBP3	ENSG00000119314.11	1768.22560	3218.90070	-0.86430	42.06910	39.79170	HepG2	DNAJC2
PTBP3	ENSG00000119314.11	1537.33220	3584.43280	-1.22130	25.51130	23.84220	HepG2	EIF2S1
PTBP3	ENSG00000119314.11	1991.67160	3000.21100	-0.59110	9.38020	7.39640	HepG2	EIF2S2
PTBP3	ENSG00000119314.11	2743.05210	3961.10120	-0.53010	4.93250	4.08270	HepG2	EIF4A3
PTBP3	ENSG00000119314.11	2737.47760	3883.53830	-0.50450	13.40000	11.83380	HepG2	EIF4G1
PTBP3	ENSG00000119314.11	5254.32210	3992.93530	0.39600	3.26950	2.43880	HepG2	FIP1L1
PTBP3	ENSG00000119314.11	2696.08120	3707.56250	-0.45960	4.07800	3.27850	HepG2	G3BP1
PTBP3	ENSG00000119314.11	1116.42400	3834.22270	-1.78000	46.97300	44.75080	HepG2	GPKOW
PTBP3	ENSG00000119314.11	2410.65390	3878.47490	-0.68610	5.71360	4.10400	HepG2	GRSF1
PTBP3	ENSG00000119314.11	2662.60780	3278.82420	-0.30030	2.86540	2.20780	HepG2	HNRNPA1
PTBP3	ENSG00000119314.11	2393.12080	3647.04170	-0.60780	9.48780	8.26670	HepG2	HNRNPC
PTBP3	ENSG00000119314.11	2422.07990	3629.17700	-0.58340	4.64670	2.68570	HepG2	HNRNPD
PTBP3	ENSG00000119314.11	2666.41430	3330.05200	-0.32060	5.00250	4.07390	HepG2	HNRNPF
PTBP3	ENSG00000119314.11	2523.46740	3586.30590	-0.50710	16.36740	14.84810	HepG2	HNRNPL
PTBP3	ENSG00000119314.11	2115.44110	3622.93290	-0.77620	28.97150	27.18830	HepG2	HNRNPU
PTBP3	ENSG00000119314.11	2690.22390	3279.16720	-0.28560	2.83240	2.09930	HepG2	IGF2BP1
PTBP3	ENSG00000119314.11	4586.39210	3768.58930	0.28320	2.01690	1.43180	HepG2	IGF2BP2
PTBP3	ENSG00000119314.11	3059.93420	3700.71360	-0.27430	5.64610	4.63130	HepG2	ILF2
PTBP3	ENSG00000119314.11	2168.32260	2894.57650	-0.41680	10.62930	8.75940	HepG2	KIF1C
PTBP3	ENSG00000119314.11	2039.56230	2940.67960	-0.52790	3.30360	1.97670	HepG2	LIN28B
PTBP3	ENSG00000119314.11	2586.62200	4115.32190	-0.66990	8.18990	7.12810	HepG2	NCBP2
PTBP3	ENSG00000119314.11	1596.59660	2583.44100	-0.69430	3.96240	2.63580	HepG2	NONO
PTBP3	ENSG00000119314.11	6000.03390	3829.36370	0.64780	3.81760	2.76170	HepG2	PABPC1
PTBP3	ENSG00000119314.11	1707.30430	3664.74500	-1.10200	20.66220	18.74190	HepG2	PABPC4
PTBP3	ENSG00000119314.11	2815.17570	3586.13850	-0.34920	6.39860	5.19150	HepG2	PARN
PTBP3	ENSG00000119314.11	3043.28890	3513.88760	-0.20740	2.66250	2.06460	HepG2	PCBP1
PTBP3	ENSG00000119314.11	2605.89790	3889.20910	-0.57770	3.31350	1.39060	HepG2	PPIG
PTBP3	ENSG00000119314.11	2351.76180	3231.37440	-0.45840	8.45690	7.21770	HepG2	PPIL4
PTBP3	ENSG00000119314.11	2594.11990	3225.18520	-0.31410	5.92300	5.08260	HepG2	PUS1
PTBP3	ENSG00000119314.11	2560.76930	3872.34880	-0.59660	13.05780	11.84700	HepG2	QKI
PTBP3	ENSG00000119314.11	5442.11840	3004.01190	0.85720	6.77190	5.69420	HepG2	RAVER1
PTBP3	ENSG00000119314.11	2685.16860	3514.42010	-0.38830	4.77120	3.90740	HepG2	RBM25
PTBP3	ENSG00000119314.11	2482.45430	3375.86840	-0.44350	2.46350	1.53250	HepG2	RBM27
PTBP3	ENSG00000119314.11	3169.36340	3706.11760	-0.22570	3.13590	2.48520	HepG2	RECQL
PTBP3	ENSG00000119314.11	4493.19770	3587.03330	0.32490	2.61320	1.94680	HepG2	RPLP0
PTBP3	ENSG00000119314.11	2332.55510	3113.66550	-0.41670	1.99360	1.30560	HepG2	RPS2
PTBP3	ENSG00000119314.11	2235.38990	4206.80940	-0.91220	10.64260	9.11950	HepG2	RPS3A
PTBP3	ENSG00000119314.11	2573.70410	3226.40790	-0.32610	6.58840	5.65820	HepG2	SAFB2
PTBP3	ENSG00000119314.11	2984.15420	3961.45490	-0.40870	2.84260	1.51480	HepG2	SART3
PTBP3	ENSG00000119314.11	2773.41780	3996.53650	-0.52710	3.18900	1.51940	HepG2	SBDS
PTBP3	ENSG00000119314.11	1448.83400	2303.75070	-0.66910	3.93210	2.81220	HepG2	SERBP1
PTBP3	ENSG00000119314.11	2902.44460	3722.55590	-0.35900	6.94130	6.07160	HepG2	SF3B4
PTBP3	ENSG00000119314.11	2657.21200	3762.58060	-0.50180	18.17230	16.74490	HepG2	SMN1
PTBP3	ENSG00000119314.11	2326.29920	3060.36780	-0.39570	2.41690	1.52520	HepG2	SMNDC1
PTBP3	ENSG00000119314.11	8302.98970	4999.18750	0.73180	38.27710	36.97480	HepG2	SRFBP1
PTBP3	ENSG00000119314.11	4863.94200	3885.55570	0.32390	6.69870	6.04070	HepG2	SRSF1
PTBP3	ENSG00000119314.11	3221.97520	3679.03130	-0.19140	2.58120	1.97200	HepG2	SRSF5
PTBP3	ENSG00000119314.11	2716.69740	3271.60870	-0.26810	3.66030	2.87650	HepG2	SRSF7
PTBP3	ENSG00000119314.11	3647.43300	3161.11800	0.20630	2.84570	2.28780	HepG2	SRSF9
PTBP3	ENSG00000119314.11	1817.08880	4340.62530	-1.25630	48.64890	47.14900	HepG2	SSB
PTBP3	ENSG00000119314.11	1693.91150	2667.72180	-0.65520	5.83510	4.11180	HepG2	STAU1
PTBP3	ENSG00000119314.11	3272.28270	4184.22750	-0.35470	9.29320	8.26770	HepG2	SUCLG1
PTBP3	ENSG00000119314.11	2720.33890	4039.93950	-0.57050	3.25000	1.80610	HepG2	SUGP2
PTBP3	ENSG00000119314.11	2272.20430	3566.02520	-0.65020	9.71140	8.47300	HepG2	TARDBP
PTBP3	ENSG00000119314.11	2732.04110	3520.52150	-0.36580	5.05870	4.42440	HepG2	TIAL1
PTBP3	ENSG00000119314.11	1678.99450	3551.81510	-1.08100	52.23970	50.20560	HepG2	TRIM56
PTBP3	ENSG00000119314.11	1069.09580	1654.70080	-0.63020	6.66490	5.47470	HepG2	UCHL5
PTBP3	ENSG00000119314.11	1559.17480	2565.07130	-0.71820	5.50580	4.06050	HepG2	UPF2
PTBP3	ENSG00000119314.11	2656.42950	3461.44110	-0.38190	7.02400	5.43660	HepG2	UTP18
PTBP3	ENSG00000119314.11	2639.87100	3251.29450	-0.30050	5.18180	4.40560	HepG2	UTP3
PTBP3	ENSG00000119314.11	1508.19010	2757.29930	-0.87040	13.13750	11.57690	HepG2	XRN2
PTBP3	ENSG00000119314.11	3185.17230	2734.53120	0.22000	3.46440	2.72600	HepG2	ZC3H8
PTBP3	ENSG00000119314.11	4506.67630	3703.72510	0.28300	6.68550	5.93200	HepG2	ZNF622
PTBP3	ENSG00000119314.11	15329.14730	11641.79160	0.39690	11.85770	10.77440	K562	AGGF1
PTBP3	ENSG00000119314.11	9414.22230	12113.85890	-0.36370	4.13400	3.33300	K562	AKAP8L
PTBP3	ENSG00000119314.11	8089.62300	10192.93520	-0.33340	4.21120	2.62590	K562	APOBEC3C
PTBP3	ENSG00000119314.11	5120.43290	9336.17700	-0.86660	15.09450	13.87520	K562	AQR
PTBP3	ENSG00000119314.11	2310.68230	3061.23390	-0.40580	4.09690	2.76370	K562	CCAR1
PTBP3	ENSG00000119314.11	4365.82850	5603.43450	-0.36010	4.62980	3.61700	K562	CPSF6
PTBP3	ENSG00000119314.11	4168.55060	4855.19800	-0.22000	2.79500	1.46620	K562	DDX27
PTBP3	ENSG00000119314.11	8076.65040	10739.38000	-0.41110	10.61460	9.43160	K562	DDX47
PTBP3	ENSG00000119314.11	4966.27300	6434.42170	-0.37360	3.32210	1.85530	K562	DDX6
PTBP3	ENSG00000119314.11	15276.76470	13035.08440	0.22880	3.43070	2.44070	K562	DKC1
PTBP3	ENSG00000119314.11	3944.15580	4845.17940	-0.29680	2.29360	1.46160	K562	EFTUD2
PTBP3	ENSG00000119314.11	5197.93370	6971.35790	-0.42350	6.36730	4.50160	K562	EIF2S1
PTBP3	ENSG00000119314.11	4351.90070	5300.47360	-0.28450	4.08930	3.13190	K562	EIF3G
PTBP3	ENSG00000119314.11	4108.11470	6630.49980	-0.69060	8.65010	7.19830	K562	EIF4A3
PTBP3	ENSG00000119314.11	4812.27980	6904.86300	-0.52090	7.37520	5.92850	K562	FIP1L1
PTBP3	ENSG00000119314.11	5531.32510	6895.47270	-0.31800	4.47870	3.73400	K562	FXR1
PTBP3	ENSG00000119314.11	3201.36800	5349.96080	-0.74080	14.89600	13.01670	K562	GPKOW
PTBP3	ENSG00000119314.11	4552.04570	7958.27630	-0.80590	15.17840	13.36970	K562	GRSF1
PTBP3	ENSG00000119314.11	13632.53840	8830.15780	0.62640	2.80740	1.57690	K562	HNRNPA2B1
PTBP3	ENSG00000119314.11	2888.95860	5932.92310	-1.03820	31.12070	29.19430	K562	HNRNPC
PTBP3	ENSG00000119314.11	4228.00030	5297.72750	-0.32540	3.55790	2.25220	K562	HNRNPF
PTBP3	ENSG00000119314.11	6427.76120	9705.87980	-0.59450	10.05400	7.92970	K562	HNRNPL
PTBP3	ENSG00000119314.11	4190.68480	5679.27610	-0.43850	4.04470	2.90550	K562	HNRNPM
PTBP3	ENSG00000119314.11	7894.39130	9361.62970	-0.24590	2.11140	1.41360	K562	HSPD1
PTBP3	ENSG00000119314.11	3257.75760	4568.04240	-0.48770	3.78340	2.67670	K562	KRR1
PTBP3	ENSG00000119314.11	7212.28410	8681.63400	-0.26750	2.64150	1.82010	K562	MAGOH
PTBP3	ENSG00000119314.11	6335.48790	8664.46180	-0.45170	5.94830	4.52510	K562	MATR3
PTBP3	ENSG00000119314.11	17624.53700	14401.61710	0.29130	2.80470	1.88900	K562	MBNL1
PTBP3	ENSG00000119314.11	4350.64530	5222.13350	-0.26340	2.51380	1.68290	K562	METAP2
PTBP3	ENSG00000119314.11	10128.30890	12312.89880	-0.28180	2.70320	1.58830	K562	MSI2
PTBP3	ENSG00000119314.11	5590.39370	7109.35860	-0.34680	6.79790	5.57850	K562	MTPAP
PTBP3	ENSG00000119314.11	4508.03880	6070.71510	-0.42940	4.11940	3.10300	K562	PCBP3
PTBP3	ENSG00000119314.11	3543.32650	4656.41650	-0.39410	5.61970	4.48030	K562	POLR2G
PTBP3	ENSG00000119314.11	4899.34870	7838.28110	-0.67790	11.15530	9.17820	K562	PPIG
PTBP3	ENSG00000119314.11	3583.64390	4714.90420	-0.39580	3.88530	2.99830	K562	PRPF8
PTBP3	ENSG00000119314.11	3901.41090	5319.38130	-0.44730	3.91200	2.80840	K562	PSIP1
PTBP3	ENSG00000119314.11	10639.86770	12603.75240	-0.24440	2.38830	1.63180	K562	PUF60
PTBP3	ENSG00000119314.11	10882.32510	13135.24760	-0.27150	4.71880	3.45350	K562	PUM2
PTBP3	ENSG00000119314.11	18110.47420	12013.28810	0.59210	9.29550	8.35000	K562	PUS1
PTBP3	ENSG00000119314.11	13501.71060	11705.41790	0.20590	2.61090	2.03280	K562	RBM15
PTBP3	ENSG00000119314.11	6273.47610	8089.29290	-0.36670	3.94540	2.92640	K562	RBM22
PTBP3	ENSG00000119314.11	3980.70400	4852.73640	-0.28580	3.16390	2.09670	K562	RCC2
PTBP3	ENSG00000119314.11	6902.42440	8512.31710	-0.30240	2.51920	1.48110	K562	NELFE
PTBP3	ENSG00000119314.11	5759.09870	7283.67520	-0.33880	3.64200	1.67480	K562	RECQL
PTBP3	ENSG00000119314.11	4455.39340	7372.07290	-0.72650	10.41000	8.33530	K562	RPS3
PTBP3	ENSG00000119314.11	5344.25600	7458.75000	-0.48090	8.71520	7.15020	K562	SF3B4
PTBP3	ENSG00000119314.11	3763.34860	4600.31720	-0.28970	2.62290	1.63290	K562	SRFBP1
PTBP3	ENSG00000119314.11	6223.22870	7985.63680	-0.35970	10.98850	9.27270	K562	SRPK2
PTBP3	ENSG00000119314.11	6079.04140	8268.33140	-0.44380	6.20570	5.15620	K562	SRSF1
PTBP3	ENSG00000119314.11	5005.89780	7117.55700	-0.50780	8.50800	6.52500	K562	SRSF4
PTBP3	ENSG00000119314.11	6737.79720	5467.44430	0.30130	4.62380	2.91270	K562	SSB
PTBP3	ENSG00000119314.11	3229.53830	4565.72180	-0.49950	4.77460	3.40910	K562	SUPV3L1
PTBP3	ENSG00000119314.11	3572.25440	8368.79080	-1.22820	26.40590	23.76470	K562	TARDBP
PTBP3	ENSG00000119314.11	6171.70820	8072.45990	-0.38730	3.41330	2.48980	K562	TIA1
PTBP3	ENSG00000119314.11	4352.93740	5434.96250	-0.32030	3.22350	2.18450	K562	TRIM56
PTBP3	ENSG00000119314.11	5905.90100	7180.80570	-0.28200	3.37900	2.49420	K562	U2AF2
PTBP3	ENSG00000119314.11	7512.06310	8375.50960	-0.15700	2.14070	1.50270	K562	UPF1
PTBP3	ENSG00000119314.11	5969.32510	7166.64440	-0.26370	2.72450	1.85420	K562	WDR3
PTBP3	ENSG00000119314.11	8246.30870	10516.35010	-0.35080	3.85150	2.80400	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PTBP3 is not available on ENCORE database.

17 RBPs can affect the splicing of PTBP3 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PTBP3	ENSG00000119314.11	chr9	-	115038123	115038293			115030328	115030475	115060120	115060196	0.18300	0.00000	0.00009	included	K562	SRSF1
SE	PTBP3	ENSG00000119314.11	chr9	-	115092720	115092754			115060120	115060196	115095749	115095905	0.09100	0.00274	0.04693	included	K562	SRSF1
SE	PTBP3	ENSG00000119314.11	chr9	-	114986412	114986570			114984524	114986263	114989690	114989907	-0.10100	0.00005	0.00167	excluded	K562	SF3B4
SE	PTBP3	ENSG00000119314.11	chr9	-	115038123	115038293			115030328	115030475	115060120	115060196	-0.23800	0.00024	0.00618	excluded	HepG2	U2AF1
SE	PTBP3	ENSG00000119314.11	chr9	-	115038123	115038293			115030328	115030475	115060120	115060196	-0.11100	0.00081	0.02659	excluded	K562	AKAP8L
SE	PTBP3	ENSG00000119314.11	chr9	-	115038123	115038293			115030328	115030475	115060111	115060196	-0.26000	0.00000	0.00145	excluded	HepG2	DDX59
SE	PTBP3	ENSG00000119314.11	chr9	-	115038123	115038293			115030328	115030475	115060111	115060196	-0.40100	0.00001	0.00018	excluded	HepG2	U2AF2
SE	PTBP3	ENSG00000119314.11	chr9	-	115092720	115092754			115060120	115060196	115095749	115095905	-0.07800	0.00007	0.00150	excluded	HepG2	U2AF2
SE	PTBP3	ENSG00000119314.11	chr9	-	114986412	114986519			114984940	114986263	114989690	114989907	-0.07100	0.00021	0.00319	excluded	K562	AQR
SE	PTBP3	ENSG00000119314.11	chr9	-	115038123	115038293			115030328	115030511	115060111	115060196	-0.10800	0.00058	0.00768	excluded	K562	AQR
SE	PTBP3	ENSG00000119314.11	chr9	-	114993521	114993693			114990659	114990752	114994378	114994509	-0.07200	0.00128	0.01510	excluded	K562	AQR
SE	PTBP3	ENSG00000119314.11	chr9	-	115038123	115038293			115030328	115030475	115060120	115060196	-0.09200	0.00138	0.02224	excluded	K562	PUS1
SE	PTBP3	ENSG00000119314.11	chr9	-	115092720	115092754			115060111	115060196	115095173	115095309	-0.37300	0.00770	0.08609	excluded	K562	PUS1
SE	PTBP3	ENSG00000119314.11	chr9	-	114993659	114993693			114990659	114990752	114997099	114997177	-0.06600	0.00025	0.00536	excluded	K562	PUS1
SE	PTBP3	ENSG00000119314.11	chr9	-	115038123	115038293			115030328	115030475	115060120	115060196	-0.16800	0.00269	0.09184	excluded	HepG2	SFPQ
SE	PTBP3	ENSG00000119314.11	chr9	-	115092720	115092754			115060120	115060196	115095749	115095905	0.15000	0.00008	0.00669	included	HepG2	PTBP1
SE	PTBP3	ENSG00000119314.11	chr9	-	115092720	115092754			115060120	115060196	115095749	115095905	-0.08600	0.00059	0.06897	excluded	HepG2	HNRNPUL1
SE	PTBP3	ENSG00000119314.11	chr9	-	115038123	115038293			115030328	115030475	115060120	115060196	-0.12000	0.00011	0.00623	excluded	K562	UTP18
SE	PTBP3	ENSG00000119314.11	chr9	-	114994378	114994518			114990659	114990752	114997099	114997177	-0.14800	0.00000	0.00010	excluded	K562	TARDBP
SE	PTBP3	ENSG00000119314.11	chr9	-	115038123	115038293			115030328	115030475	115060120	115060196	-0.10300	0.00050	0.01592	excluded	K562	AGGF1
SE	PTBP3	ENSG00000119314.11	chr9	-	115038123	115038293			115030328	115030475	115060111	115060196	0.18400	0.00048	0.05218	included	K562	CPSF6
SE	PTBP3	ENSG00000119314.11	chr9	-	115038123	115038293			115030328	115030475	115060111	115060196	-0.28000	0.00007	0.00509	excluded	HepG2	HNRNPU
SE	PTBP3	ENSG00000119314.11	chr9	-	115092720	115092754			115060120	115060196	115095749	115095905	0.44700	0.00000	0.00000	included	K562	PTBP1
A3SS	PTBP3	ENSG00000119314.11	chr9	-	114997099	114997251			114997099	114997177	115013208	115013445	0.05300	0.00001	0.00009	longer	K562	AQR
A3SS	PTBP3	ENSG00000119314.11	chr9	-	114994378	114994548			114994378	114994518	114997099	114997177	0.06900	0.00000	0.00004	longer	K562	AQR
A3SS	PTBP3	ENSG00000119314.11	chr9	-	115024714	115024903			115024714	115024879	115030328	115030475	0.05400	0.00000	0.00004	longer	K562	AQR
A3SS	PTBP3	ENSG00000119314.11	chr9	-	115013208	115013445			115013208	115013383	115014957	115015068	0.09100	0.00000	0.00000	longer	K562	AQR
A3SS	PTBP3	ENSG00000119314.11	chr9	-	115030328	115030511			115030328	115030475	115060111	115060196	0.32900	0.00001	0.00007	longer	K562	AQR
A5SS	PTBP3	ENSG00000119314.11	chr9	-	115060111	115060196			115060120	115060196	115038123	115038293	-0.23600	0.00014	0.02041	shorter	K562	EFTUD2
MXE	PTBP3	ENSG00000119314.11	chr9	-	114993659	114993693	114994378	114994548	114990659	114990752	114997099	114997177	0.05400	0.00002	0.00027	1included	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PTBP3

General Information

Functions

Localization

Domains (AlphaFold: PTBP3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PTBP3 is not avaliable on ENCORE database.

39 proteins are bound to PTBP3 RNA:

eCLIP assay for PTBP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PTBP3 is not available on ENCORE database.

122 RBPs can affect the gene expression of PTBP3 :

The Knockdown/knockout RNA-Seq assay for PTBP3 is not available on ENCORE database.

17 RBPs can affect the splicing of PTBP3 :

The Knockdown/knockout RNA-Seq assay for PTBP3 is not avaliable on ENCORE database.