Experiment Information (Status: Released)

RBP	PTBP3
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	92

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
PTBP3-1300	RBNS	40-40	1300	PTBP3_1300.fastq.gz
PTBP3-20	RBNS	40-40	20	PTBP3_20.fastq.gz
PTBP3-320	RBNS	40-40	320	PTBP3_320.fastq.gz
PTBP3-3900	RBNS	40-40	3900	PTBP3_3900.fastq.gz
PTBP3-5	RBNS	40-40	5	PTBP3_5.fastq.gz
PTBP3-80	RBNS	40-40	80	PTBP3_80.fastq.gz
PTBP3-input	CN	40-40	0	PTBP3_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:PTBP3	ENCSR741ZPT	experiment	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-12	ENCODE3			8071
chris-burge:PTBP3-input-cntl	ENCFF002BYQ	experiment	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-14	ENCODE3			8072
chris-burge:lib-PTB3-1	ENCLB015FIC	library	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-12	ENCODE3			8393
chris-burge:lib-PTB3-2	ENCLB278HRC	library	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-12	ENCODE3			8394
chris-burge:lib-PTB3-3	ENCLB250GQG	library	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-12	ENCODE3			8395
chris-burge:lib-PTB3-4	ENCLB906LSK	library	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-12	ENCODE3			8396
chris-burge:lib-PTB3-5	ENCLB527ZHO	library	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-12	ENCODE3			8397
chris-burge:lib-PTB3-6	ENCLB574QLC	library	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-12	ENCODE3			8398
chris-burge:lib-PTB3-input-cntl	ENCLB193MXY	library	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-12	ENCODE3			8399
chris-burge:PTBP3_20.fastq.gz	ENCFF002BYK	file_fastq	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-14	ENCODE3			9663
chris-burge:PTBP3_1300.fastq.gz	ENCFF002BYJ	file_fastq	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-14	ENCODE3			9664
chris-burge:PTBP3_5.fastq.gz	ENCFF002BYO	file_fastq	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-14	ENCODE3			9665
chris-burge:PTBP3_3900.fastq.gz	ENCFF002BYM	file_fastq	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-14	ENCODE3			9666
chris-burge:PTBP3_80.fastq.gz	ENCFF002BYP	file_fastq	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-14	ENCODE3			9667
chris-burge:PTBP3_320.fastq.gz	ENCFF002BYL	file_fastq	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-14	ENCODE3			9668
chris-burge:PTBP3_est_binding_frac.7mers.txt	ENCFF002EVH	file_library-fraction	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-14	ENCODE3			9669
chris-burge:PTBP3_est_binding_frac.6mers.txt	ENCFF002EVG	file_library-fraction	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-14	ENCODE3			9670
chris-burge:PTBP3_est_binding_frac.5mers.txt	ENCFF002EVJ	file_library-fraction	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-14	ENCODE3			9671
chris-burge:PTBP3_enrichment_R.5mers.txt	ENCFF002EVI	file_enrichment	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-14	ENCODE3			9672
chris-burge:PTBP3_enrichment_R.7mers.txt	ENCFF002EVF	file_enrichment	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-14	ENCODE3			9673
chris-burge:PTBP3_enrichment_R.6mers.txt	ENCFF002EVE	file_enrichment	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-14	ENCODE3			9674
chris-burge:HepG2.with_motif.PTBP1.bed.gz	ENCFF988VZT	file_bed	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-14	ENCODE3			9736
chris-burge:K562.with_motif.PTBP1.bed.gz	ENCFF817UKQ	file_bed	RNA Bind-n-Seq	PTBP3		Yes	Released	2022-07-14	ENCODE3			9737

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
PTBP3_7mers.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
PTBP3_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PTBP3_input.fastq.gz	ENCODE3
PTBP3_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PTBP3_input.fastq.gz	ENCODE3
PTBP3_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PTBP3_input.fastq.gz	ENCODE3
PTBP3_3900.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PTBP3_input.fastq.gz	ENCODE3
PTBP3_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PTBP3_input.fastq.gz	ENCODE3
PTBP3_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PTBP3_input.fastq.gz	ENCODE3
PTBP3_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
PTBP3_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PTBP3_1300.fastq.gz,PTBP3_20.fastq.gz,PTBP3_320.fastq.gz,PTBP3_3900.fastq.gz,PTBP3_5.fastq.gz,PTBP3_80.fastq.gz,PTBP3_input.fastq.gz		ENCODE3
PTBP3_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PTBP3_1300.fastq.gz,PTBP3_20.fastq.gz,PTBP3_320.fastq.gz,PTBP3_3900.fastq.gz,PTBP3_5.fastq.gz,PTBP3_80.fastq.gz,PTBP3_input.fastq.gz		ENCODE3
PTBP3_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PTBP3_1300.fastq.gz,PTBP3_20.fastq.gz,PTBP3_320.fastq.gz,PTBP3_3900.fastq.gz,PTBP3_5.fastq.gz,PTBP3_80.fastq.gz,PTBP3_input.fastq.gz		ENCODE3
PTBP3_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PTBP3_1300.fastq.gz,PTBP3_20.fastq.gz,PTBP3_320.fastq.gz,PTBP3_3900.fastq.gz,PTBP3_5.fastq.gz,PTBP3_80.fastq.gz,PTBP3_input.fastq.gz		ENCODE3
PTBP3_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PTBP3_1300.fastq.gz,PTBP3_20.fastq.gz,PTBP3_320.fastq.gz,PTBP3_3900.fastq.gz,PTBP3_5.fastq.gz,PTBP3_80.fastq.gz,PTBP3_input.fastq.gz		ENCODE3
PTBP3_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PTBP3_1300.fastq.gz,PTBP3_20.fastq.gz,PTBP3_320.fastq.gz,PTBP3_3900.fastq.gz,PTBP3_5.fastq.gz,PTBP3_80.fastq.gz,PTBP3_input.fastq.gz		ENCODE3
HepG2.with_motif.PTBP1.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	PTBP3_enrichment_R.5mers.txt,692.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3
K562.with_motif.PTBP1.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	PTBP3_enrichment_R.5mers.txt,368.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3