NPM3

General Information

Gene Name       : NPM3
Gene ID             : ENSG00000107833.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NPM3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NPM3ENSG00000107833.1049.38116.5582.97ENCSR000AEF
HepG2NPM3ENSG00000107833.10146.20100.12123.16ENCSR985KAT
K562NPM3ENSG00000107833.10147.55160.96154.25ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NPM3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NPM3 RNA is bound by 12 proteins.  







eCLIP assay for NPM3 is not avaliable on ENCORE database.





12 proteins are bound to NPM3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10103541203103541278-3'-UTR,intron-Distal,intron-Proximal5.2101430.93972K562DDX6
chr10103541220103541266-3'-UTR,intron-Distal,intron-Proximal5.0110815.08701K562PABPC4
chr10103541216103541285-3'-UTR,intron-Distal,intron-Proximal3.367873.57593K562GTF2F1
chr10103541179103541217-3'-UTR,intron-Distal3.366238.67981K562YBX3
chr10103541226103541285-3'-UTR,intron-Distal,intron-Proximal4.4830212.75399K562PUM2
chr10103541186103541281-3'-UTR,intron-Distal,intron-Proximal5.2279911.88190HepG2DDX55
chr10103541483103541538-3'-UTR,CDS,intron-Distal,intron-Proximal4.179756.03373HepG2LARP4
chr10103541226103541280-3'-UTR,intron-Distal,intron-Proximal3.8699111.48011K562DDX55
chr10103541233103541278-3'-UTR,intron-Distal,intron-Proximal3.528416.95324HepG2LARP4
chr10103541285103541322-3'-UTR,intron-Distal,intron-Proximal7.0124713.67942K562PUM2
chr10103541186103541220-3'-UTR,intron-Distal4.6050912.87873K562PABPC4
chr10103541228103541273-3'-UTR,intron-Distal,intron-Proximal3.144264.20283K562APOBEC3C
chr10103543048103543154-5'-UTR,CDS,intron-Distal,intron-Proximal3.012497.17549K562DDX3X
chr10103543053103543101-CDS,intron-Distal4.593913.99162HepG2DDX3X
chr10103542869103542940-intron-Distal4.234654.21433K562PRPF8
chr10103542887103542959-intron-Distal4.033413.91585HepG2PRPF4
chr10103542872103542957-intron-Distal5.856638.50915HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NPM3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NPM3 is not available on ENCORE database.

  • 110 RBPs can affect the levels of NPM3.  








The Knockdown/knockout RNA-Seq assay for NPM3 is not available on ENCORE database.





110 RBPs can affect the gene expression of NPM3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NPM3ENSG00000107833.6261.85800404.51970-0.627405.685504.87540HepG2ACO1
NPM3ENSG00000107833.61413.53950840.705200.749507.213806.39920HepG2AKAP1
NPM3ENSG00000107833.6519.06340859.98640-0.7284011.5110010.27380HepG2AUH
NPM3ENSG00000107833.6306.30260484.61860-0.661904.530603.40500HepG2BCLAF1
NPM3ENSG00000107833.6138.11780225.75880-0.708902.581202.00040HepG2BOP1
NPM3ENSG00000107833.6292.73010432.21920-0.562202.411201.70030HepG2CNOT7
NPM3ENSG00000107833.6130.63810207.24570-0.665802.332301.69350HepG2CPSF6
NPM3ENSG00000107833.6268.51320386.99800-0.527303.402202.66140HepG2DKC1
NPM3ENSG00000107833.6193.52040316.37890-0.709203.706502.41440HepG2AGO1
NPM3ENSG00000107833.6394.66650665.04230-0.752806.365205.48610HepG2EIF2S1
NPM3ENSG00000107833.6485.24180734.95140-0.598904.257603.46870HepG2EIF4A3
NPM3ENSG00000107833.6417.93450715.57540-0.775805.249504.32280HepG2EIF4B
NPM3ENSG00000107833.6838.58330987.38050-0.235701.974501.44800HepG2ETF1
NPM3ENSG00000107833.6320.76540456.46020-0.509003.005101.68360HepG2FKBP4
NPM3ENSG00000107833.6443.37120687.88070-0.633604.758903.89750HepG2G3BP1
NPM3ENSG00000107833.6529.40790730.27040-0.464103.065502.12700HepG2G3BP2
NPM3ENSG00000107833.6125.08460234.89310-0.909103.447802.73900HepG2GPKOW
NPM3ENSG00000107833.6187.32040323.38650-0.787804.857904.03450HepG2HNRNPA1
NPM3ENSG00000107833.6259.08310359.69070-0.473302.357301.71210HepG2HNRNPC
NPM3ENSG00000107833.6120.12950224.16610-0.900003.446502.75290HepG2HNRNPLL
NPM3ENSG00000107833.6506.31800699.21660-0.465702.888302.20120HepG2IGF2BP2
NPM3ENSG00000107833.6400.56070741.78940-0.889008.924507.75890HepG2MAGOH
NPM3ENSG00000107833.6512.39420745.94190-0.541803.494402.79290HepG2MATR3
NPM3ENSG00000107833.6123.08460228.69910-0.893802.833101.85360HepG2MTPAP
NPM3ENSG00000107833.6463.53080763.51360-0.720006.139205.21300HepG2NCBP2
NPM3ENSG00000107833.6312.86560503.72270-0.687103.150601.97960HepG2NONO
NPM3ENSG00000107833.6103.73120198.79230-0.938403.587202.73560HepG2NSUN2
NPM3ENSG00000107833.6392.20150679.96140-0.793907.117805.97080HepG2PABPC4
NPM3ENSG00000107833.6200.02490319.36420-0.675004.916303.91510HepG2PRPF4
NPM3ENSG00000107833.6203.49770422.94610-1.055509.115607.74370HepG2PRPF8
NPM3ENSG00000107833.6412.66390663.20440-0.684508.613207.75810HepG2PTBP1
NPM3ENSG00000107833.6369.83470669.49490-0.856204.084703.37600HepG2PUF60
NPM3ENSG00000107833.6442.62020718.31830-0.698608.188307.20230HepG2QKI
NPM3ENSG00000107833.6149.37880342.45230-1.196902.373701.71730HepG2RAVER1
NPM3ENSG00000107833.6686.01440825.26720-0.266601.844401.39920HepG2RBM22
NPM3ENSG00000107833.6308.78330651.90050-1.0781014.7964013.30500HepG2RBM25
NPM3ENSG00000107833.6370.36900738.10290-0.9949016.5540015.44470HepG2NELFE
NPM3ENSG00000107833.6489.58690687.40610-0.489605.004204.20550HepG2RECQL
NPM3ENSG00000107833.6333.87020480.90510-0.526503.780003.00170HepG2RPLP0
NPM3ENSG00000107833.6167.63760243.87640-0.540802.542601.95110HepG2RPS19
NPM3ENSG00000107833.6266.51800434.17720-0.704104.043003.07480HepG2RPS3A
NPM3ENSG00000107833.6208.60320418.36890-1.004007.817206.57980HepG2RRP9
NPM3ENSG00000107833.6143.49840221.85930-0.628602.222601.58620HepG2SF3B1
NPM3ENSG00000107833.6384.01000690.52470-0.8465012.2606011.15560HepG2SF3B4
NPM3ENSG00000107833.6746.43020932.10850-0.320503.160302.63670HepG2SRFBP1
NPM3ENSG00000107833.6453.72640661.12750-0.543102.336501.75540HepG2SRSF5
NPM3ENSG00000107833.6341.05900438.52110-0.362602.586101.91110HepG2SRSF7
NPM3ENSG00000107833.6288.88870586.34570-1.0212015.0680013.96520HepG2SRSF9
NPM3ENSG00000107833.6396.33170809.29020-1.0299020.6314019.51240HepG2SSB
NPM3ENSG00000107833.6235.43300545.92030-1.2134012.1672010.91740HepG2SUPV3L1
NPM3ENSG00000107833.6388.00330595.27430-0.617506.004704.78160HepG2TIA1
NPM3ENSG00000107833.6182.18540347.26080-0.930608.187407.41070HepG2TIAL1
NPM3ENSG00000107833.6139.71710316.91680-1.181609.554008.37140HepG2U2AF1
NPM3ENSG00000107833.6553.24520256.457401.1091017.0382015.74000HepG2UTP3
NPM3ENSG00000107833.6171.90420315.16230-0.874507.720706.69080HepG2ZC3H8
NPM3ENSG00000107833.6583.35410796.00620-0.448402.952901.68210K562ABCF1
NPM3ENSG00000107833.6997.39410774.963900.363903.596602.96470K562AGGF1
NPM3ENSG00000107833.6842.913401521.14920-0.851708.004907.09360K562AQR
NPM3ENSG00000107833.6764.18310988.94520-0.372004.208903.00930K562BCLAF1
NPM3ENSG00000107833.6144.53520352.57060-1.286508.288706.73820K562BOP1
NPM3ENSG00000107833.6369.22420554.50470-0.586703.787402.06780K562BUD13
NPM3ENSG00000107833.6533.82810723.32960-0.438303.844602.05530K562CEBPZ
NPM3ENSG00000107833.6634.00550850.12250-0.423202.869801.56390K562CIRBP
NPM3ENSG00000107833.6387.41470778.67170-1.007107.021605.27530K562CNOT7
NPM3ENSG00000107833.6234.84620374.91090-0.674803.228102.37920K562CPSF6
NPM3ENSG00000107833.6573.76020750.26240-0.386903.068401.95060K562CSTF2
NPM3ENSG00000107833.61521.045702139.67200-0.492306.882505.36630K562CELF1
NPM3ENSG00000107833.6664.36050831.38920-0.323602.866201.63140K562DDX21
NPM3ENSG00000107833.6381.77890536.49080-0.490802.714101.39750K562DHX30
NPM3ENSG00000107833.61159.79340867.813200.418304.664703.48090K562DKC1
NPM3ENSG00000107833.6307.65100515.40350-0.744404.744702.96720K562DNAJC21
NPM3ENSG00000107833.6602.70590849.13300-0.494504.093502.96620K562EFTUD2
NPM3ENSG00000107833.6819.593601246.44210-0.604809.810108.58090K562EIF2S2
NPM3ENSG00000107833.6667.03440909.00680-0.446502.875501.82030K562EIF3D
NPM3ENSG00000107833.6412.48040608.54440-0.561003.051901.33900K562ESF1
NPM3ENSG00000107833.6497.76670756.03800-0.603004.356702.19890K562FAM120A
NPM3ENSG00000107833.6404.43230632.85090-0.646004.943303.36110K562FKBP4
NPM3ENSG00000107833.6162.30360381.41030-1.232607.606106.14860K562FMR1
NPM3ENSG00000107833.6168.54730323.25680-0.939505.413004.08680K562FTO
NPM3ENSG00000107833.61070.61650716.359700.579608.299807.32190K562FXR1
NPM3ENSG00000107833.679.91940389.68990-2.2857026.1467023.14040K562G3BP2
NPM3ENSG00000107833.6541.71360725.21690-0.420903.787602.46210K562GLRX3
NPM3ENSG00000107833.6193.84190357.96940-0.885004.338303.35040K562GPKOW
NPM3ENSG00000107833.6937.882001320.94610-0.494103.616102.38390K562HNRNPA1
NPM3ENSG00000107833.6378.30220728.66660-0.945706.744104.35650K562HNRNPAB
NPM3ENSG00000107833.6247.51060728.90780-1.5582027.5051025.70870K562HNRNPC
NPM3ENSG00000107833.6385.20160650.92320-0.756907.670405.69260K562HNRNPF
NPM3ENSG00000107833.6979.06320757.911200.369302.983101.88170K562HNRNPL
NPM3ENSG00000107833.6780.80050470.740300.729906.463804.95030K562HNRNPM
NPM3ENSG00000107833.61037.61900775.820400.419403.317002.44790K562HSPD1
NPM3ENSG00000107833.6385.84610710.61950-0.881105.196203.20500K562ILF2
NPM3ENSG00000107833.6307.47070484.00040-0.654603.283401.65870K562KHDRBS1
NPM3ENSG00000107833.6134.78680305.60420-1.181004.726503.46600K562KRR1
NPM3ENSG00000107833.6218.51220349.40890-0.677202.774501.89680K562METAP2
NPM3ENSG00000107833.61144.142901854.86230-0.697009.507207.49850K562MSI2
NPM3ENSG00000107833.6558.33400762.46490-0.449504.754903.71770K562MTPAP
NPM3ENSG00000107833.6624.76620847.20140-0.439405.707804.69060K562NSUN2
NPM3ENSG00000107833.6390.27670748.07460-0.938706.797704.87700K562PABPC1
NPM3ENSG00000107833.6564.38350741.68090-0.394102.724701.75230K562PCBP2
NPM3ENSG00000107833.6317.73290819.06550-1.3662019.4778017.35760K562PCBP3
NPM3ENSG00000107833.61448.411201788.08930-0.303902.958901.47070K562PNPT1
NPM3ENSG00000107833.6306.05880628.27340-1.0376013.6522011.94170K562POLR2G
NPM3ENSG00000107833.61038.33500649.697400.676307.518406.02290K562PPIG
NPM3ENSG00000107833.61002.33590809.940500.307402.371101.74850K562PTBP1
NPM3ENSG00000107833.61437.197501898.67100-0.401703.505802.58920K562PUF60
NPM3ENSG00000107833.61615.427302019.52400-0.322103.235102.07890K562PUM1
NPM3ENSG00000107833.61302.151001978.74440-0.6037011.395209.44160K562PUM2
NPM3ENSG00000107833.6151.61920371.81830-1.294103.193001.65080K562RAVER1
NPM3ENSG00000107833.6636.66550841.57370-0.402602.531101.75170K562RPS19
NPM3ENSG00000107833.6649.48870835.92040-0.364103.449902.54470K562SF3A3
NPM3ENSG00000107833.6167.98250340.36240-1.018806.217504.72550K562SF3B1
NPM3ENSG00000107833.6513.79990405.241100.342302.118701.37190K562SF3B4
NPM3ENSG00000107833.6346.49770527.97170-0.607602.951001.64330K562SLBP
NPM3ENSG00000107833.6532.39600741.95520-0.478805.143403.52940K562SRSF7
NPM3ENSG00000107833.6494.45470715.15320-0.532405.258503.10570K562SRSF9
NPM3ENSG00000107833.6462.87080686.66160-0.569004.079902.50550K562STAU1
NPM3ENSG00000107833.6361.43910694.13710-0.941505.053502.83870K562STIP1
NPM3ENSG00000107833.61330.715601656.61010-0.316003.107501.51110K562SUCLG1
NPM3ENSG00000107833.6412.23420809.86500-0.974202.746601.32940K562SUPT6H
NPM3ENSG00000107833.6445.39360799.84070-0.844608.432606.62010K562SUPV3L1
NPM3ENSG00000107833.6813.71620630.143900.368702.946002.09730K562SYNCRIP
NPM3ENSG00000107833.6134.15900382.52940-1.5116010.320506.81240K562TAF15
NPM3ENSG00000107833.6264.09290406.22440-0.621204.055502.08390K562TBRG4
NPM3ENSG00000107833.6403.69680628.59910-0.638904.817703.55380K562TIAL1
NPM3ENSG00000107833.6164.30920390.14470-1.2476014.4513012.59710K562U2AF2
NPM3ENSG00000107833.61599.038102140.69980-0.420904.640102.83100K562UBE2L3
NPM3ENSG00000107833.6440.29460846.63510-0.9433011.674509.54130K562UCHL5
NPM3ENSG00000107833.6557.55020898.30280-0.6881011.204809.87950K562UPF1
NPM3ENSG00000107833.6457.29100768.65380-0.749209.028107.41080K562WDR3
NPM3ENSG00000107833.6664.50920799.28020-0.266402.288301.51190K562WDR43
NPM3ENSG00000107833.61335.604501801.82530-0.432003.035901.67900K562WRN
NPM3ENSG00000107833.6620.95710862.27240-0.473703.679502.21510K562XRN2
NPM3ENSG00000107833.6895.690401713.84950-0.936208.970007.29270K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NPM3 is not available on ENCORE database.





17 RBPs can affect the splicing of NPM3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENPM3ENSG00000107833.6chr10-103542014103542108103541483103541611103542234103542354-0.060000.001690.03219excludedK562SF3B4
SENPM3ENSG00000107833.6chr10-103542014103542108103541483103541611103542234103542354-0.363000.000000.00000excludedHepG2U2AF1
SENPM3ENSG00000107833.6chr10-103542595103542681103542234103542354103543029103543132-0.146000.002390.04206excludedHepG2U2AF1
SENPM3ENSG00000107833.6chr10-103542595103542681103542234103542354103543029103543170-0.158000.000060.00880excludedHepG2PRPF8
SENPM3ENSG00000107833.6chr10-1035425951035426811035422341035423541035430291035431320.109000.000470.04146includedHepG2TBRG4
SENPM3ENSG00000107833.6chr10-103542014103542108103541483103541611103542234103542354-0.327000.000000.00000excludedHepG2U2AF2
SENPM3ENSG00000107833.6chr10-103542595103542681103542234103542354103543029103543132-0.282000.000030.00076excludedHepG2U2AF2
SENPM3ENSG00000107833.6chr10-103542014103542108103541483103541611103542234103542354-0.122000.000000.00000excludedK562AQR
SENPM3ENSG00000107833.6chr10-103542595103542681103542234103542354103543029103543132-0.085000.000850.04553excludedK562EFTUD2
SENPM3ENSG00000107833.6chr10-103542014103542108103541483103541611103542234103542354-0.086000.000100.00324excludedK562U2AF1
SENPM3ENSG00000107833.6chr10-103542014103542108103541483103541611103542234103542354-0.063000.000900.09178excludedHepG2PCBP2
SENPM3ENSG00000107833.6chr10-1035425951035426811035422341035423541035430291035431320.075000.000700.05090includedHepG2HNRNPL
SENPM3ENSG00000107833.6chr10-103542014103542108103541483103541611103542234103542354-0.088000.001380.03930excludedHepG2SF3A3
SENPM3ENSG00000107833.6chr10-1035425951035426811035422341035423541035430291035431700.248000.000090.03085includedK562FXR2
SENPM3ENSG00000107833.6chr10-103542595103542681103542234103542354103543029103543170-0.202000.000000.00074excludedHepG2TIAL1
SENPM3ENSG00000107833.6chr10-103542595103542681103542234103542354103543029103543132-0.155000.000030.00497excludedHepG2SUPV3L1
SENPM3ENSG00000107833.6chr10-103542014103542108103541483103541611103542234103542354-0.064000.000090.00661excludedHepG2SF3B4
SENPM3ENSG00000107833.6chr10-103542595103542681103542234103542354103543029103543132-0.135000.000140.00976excludedHepG2SF3B4
SENPM3ENSG00000107833.6chr10-103542595103542681103542234103542354103543029103543132-0.104000.000010.00288excludedK562UPF1
SENPM3ENSG00000107833.6chr10-103542014103542108103541483103541611103542234103542354-0.068000.001850.03287excludedK562U2AF2
SENPM3ENSG00000107833.6chr10-103542595103542681103542234103542354103543029103543132-0.121000.005800.08123excludedK562U2AF2
SENPM3ENSG00000107833.6chr10-1035424591035426811035422341035423541035430291035431700.092000.000620.02611includedK562HNRNPU
SENPM3ENSG00000107833.6chr10-103542595103542681103542234103542354103543029103543132-0.164000.000020.00167excludedK562SF3B1
SENPM3ENSG00000107833.6chr10-103542595103542681103542234103542354103543029103543170-0.159000.000150.00842excludedHepG2HNRNPC
SENPM3ENSG00000107833.6chr10-103541900103542108103541483103541611103542234103542405-0.068000.006370.08386excludedK562HNRNPC
SENPM3ENSG00000107833.6chr10-103542595103542681103542234103542354103543029103543132-0.187000.000000.00000excludedK562HNRNPC
A3SSNPM3ENSG00000107833.6chr10-1035420141035421441035420141035421081035422341035423540.112000.002440.05404longerHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NPM3 is not avaliable on ENCORE database.