LPGAT1

General Information

Gene Name       : LPGAT1
Gene ID             : ENSG00000123684.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LPGAT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LPGAT1ENSG00000123684.1218.7611.7415.25ENCSR000AEF
HepG2LPGAT1ENSG00000123684.126.7914.1010.45ENCSR985KAT
K562LPGAT1ENSG00000123684.129.229.339.28ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LPGAT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LPGAT1 RNA is bound by 16 proteins.  







eCLIP assay for LPGAT1 is not avaliable on ENCORE database.





16 proteins are bound to LPGAT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1211920644211920703-3'-UTR,intron-Distal4.647799.35741K562PUM2
chr1212003561212003638-5'-UTR,intron-Distal,intron-Proximal3.9403018.84251HepG2DDX3X
chr1212003479212003511-5'-UTR,intron-Distal,intron-Proximal4.1369212.18707HepG2PRPF8
chr1212003913212003966-5'-UTR,intron-Distal3.8260217.22645HepG2DDX3X
chr1212003255212003364-5'-UTR,intron-Distal5.036107.79030HepG2PCBP2
chr1212003511212003526-5'-UTR,intron-Distal,intron-Proximal3.9976211.26073HepG2PRPF8
chr1212004000212004091-5'-UTR,intron-Distal,intron-Proximal5.8571829.02593HepG2DDX3X
chr1211966431211966492-CDS,intron-Distal3.098873.02345K562ZNF622
chr1211966483211966562-CDS,intron-Distal,intron-Proximal3.796323.55754HepG2U2AF2
chr1212002537212002628-CDS,intron-Distal3.888797.94128HepG2DDX3X
chr1212002397212002481-CDS,intron-Distal,intron-Proximal3.751183.30425K562LIN28B
chr1211966411211966454-CDS,intron-Distal,intron-Proximal4.158664.23668K562LIN28B
chr1211952259211952279-CDS,intron-Distal,intron-Proximal6.219996.46573K562PUM2
chr1212002472212002518-CDS,intron-Distal,intron-Proximal4.461075.84664K562PUM2
chr1211956716211956770-CDS,intron-Distal3.864373.05875K562RBM15
chr1211966413211966498-CDS,intron-Distal,intron-Proximal5.115977.92402HepG2LIN28B
chr1211976735211976808-intron-Distal3.515837.27760HepG2SUGP2
chr1211987606211987753-intron-Distal4.626438.21761HepG2PTBP1
chr1211976103211976181-intron-Distal4.3364410.04921HepG2SUGP2
chr1211975815211975853-intron-Distal3.354984.36650HepG2SUGP2
chr1212001722212001823-intron-Distal3.673875.96041K562KHSRP
chr1211976569211976616-intron-Distal4.246253.79098HepG2SUGP2
chr1211969046211969172-intron-Distal4.852166.49093K562TARDBP
chr1211976593211976703-intron-Distal4.385063.45817K562MATR3
chr1211987661211987753-intron-Distal3.978055.39628K562PTBP1
chr1211987138211987215-intron-Distal3.255624.59863HepG2PTBP1
chr1212000726212000762-intron-Distal4.334684.64592HepG2HNRNPM
chr1211972102211972183-intron-Distal3.942836.54646HepG2QKI
chr1211976590211976673-intron-Distal4.489463.96879HepG2MATR3
chr1211983638211983699-intron-Distal3.399894.65237HepG2U2AF2
chr1212001911212002005-intron-Distal5.216807.39957K562KHSRP
chr1211975732211975853-intron-Distal3.415813.79878K562MATR3
chr1212002710212002754-intron-Distal,intron-Proximal4.245613.02234K562KHSRP
chr1212003638212003673-intron-Distal,intron-Proximal4.1630115.03646HepG2DDX3X
chr1211975056211975109-intron-Distal3.214823.34990HepG2PTBP1
chr1212002102212002176-intron-Distal3.760135.08363HepG2KHSRP
chr1212001069212001105-intron-Distal4.350894.12480HepG2HNRNPM
chr1211998808211998881-intron-Distal3.239126.48731K562RBFOX2
chr1211993789211993880-intron-Distal3.865404.48652HepG2PTBP1
chr1211976114211976180-intron-Distal3.668695.13840HepG2MATR3
chr1211976399211976450-intron-Distal4.6954711.37109HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LPGAT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LPGAT1 is not available on ENCORE database.

  • 97 RBPs can affect the levels of LPGAT1.  








The Knockdown/knockout RNA-Seq assay for LPGAT1 is not available on ENCORE database.





97 RBPs can affect the gene expression of LPGAT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LPGAT1ENSG00000123684.81772.789401392.750200.348002.906101.81240HepG2AATF
LPGAT1ENSG00000123684.81578.050202019.42830-0.355806.086205.25510HepG2ACO1
LPGAT1ENSG00000123684.81631.212102829.46190-0.794607.407206.58180HepG2AKAP1
LPGAT1ENSG00000123684.82354.271702029.050200.214402.058601.38430HepG2AKAP8L
LPGAT1ENSG00000123684.83038.027702341.233100.375803.139002.30190HepG2ASCC1
LPGAT1ENSG00000123684.82329.406001863.074300.322202.955301.50580HepG2ATP5C1
LPGAT1ENSG00000123684.83398.760002910.739200.223502.320501.68280HepG2AUH
LPGAT1ENSG00000123684.82053.157801368.180800.585506.451005.14140HepG2BCLAF1
LPGAT1ENSG00000123684.81143.335202489.11790-1.122405.939704.48170HepG2CCAR1
LPGAT1ENSG00000123684.82326.405002019.150700.204302.727002.06560HepG2CKAP4
LPGAT1ENSG00000123684.83090.726901633.247600.9201017.4334015.88450HepG2CPSF6
LPGAT1ENSG00000123684.82070.943101700.173300.284502.518001.46290HepG2CPSF7
LPGAT1ENSG00000123684.82062.494301425.565000.532803.772202.09420HepG2CSTF2T
LPGAT1ENSG00000123684.82825.396902339.515400.272104.550503.63540HepG2DAZAP1
LPGAT1ENSG00000123684.82037.794801503.864400.438205.145703.89080HepG2DDX24
LPGAT1ENSG00000123684.81908.838901448.500900.398003.151301.78180HepG2DDX27
LPGAT1ENSG00000123684.81488.069401172.909800.343202.685801.31930HepG2DDX28
LPGAT1ENSG00000123684.81041.036101547.84720-0.572203.597702.73100HepG2DDX55
LPGAT1ENSG00000123684.82951.552501833.313500.686909.877908.11440HepG2DDX5
LPGAT1ENSG00000123684.82409.547901415.240800.767605.872904.26970HepG2AGO1
LPGAT1ENSG00000123684.84089.236702473.944200.724908.765807.63170HepG2EIF4A3
LPGAT1ENSG00000123684.83201.659602408.310400.410702.543601.88250HepG2EIF4B
LPGAT1ENSG00000123684.83451.732002210.879100.642609.048007.61130HepG2EIF4G2
LPGAT1ENSG00000123684.84010.544303341.752300.263104.118703.41020HepG2ETF1
LPGAT1ENSG00000123684.81764.591401288.461200.453604.134702.60560HepG2FKBP4
LPGAT1ENSG00000123684.83102.464402457.460500.336102.717301.83580HepG2G3BP2
LPGAT1ENSG00000123684.82860.811701851.415400.627706.859605.87970HepG2GPKOW
LPGAT1ENSG00000123684.82465.251501661.846700.568807.750006.75080HepG2HNRNPA1
LPGAT1ENSG00000123684.81756.553502343.56560-0.416003.312202.55000HepG2HNRNPK
LPGAT1ENSG00000123684.82779.196901766.839600.653408.587107.54330HepG2HNRNPLL
LPGAT1ENSG00000123684.8940.893101438.30680-0.612308.094806.60370HepG2HNRNPM
LPGAT1ENSG00000123684.81037.618901875.66190-0.8541031.6937029.57980HepG2ILF2
LPGAT1ENSG00000123684.83200.402102496.306000.358402.826902.16530HepG2MAGOH
LPGAT1ENSG00000123684.82495.241301801.942400.469502.593901.65980HepG2MTPAP
LPGAT1ENSG00000123684.81054.341501416.71630-0.426204.211302.71230HepG2NAA15
LPGAT1ENSG00000123684.8806.041201420.87370-0.817904.565603.14120HepG2NONO
LPGAT1ENSG00000123684.82340.165801566.639800.578807.035905.87930HepG2NSUN2
LPGAT1ENSG00000123684.81529.144402288.80970-0.581904.557303.64270HepG2PABPC4
LPGAT1ENSG00000123684.81464.710501817.61360-0.311404.060603.05670HepG2PARN
LPGAT1ENSG00000123684.81488.571102161.77880-0.5383011.7309010.61980HepG2PCBP1
LPGAT1ENSG00000123684.8718.580801002.48480-0.480405.093003.44320HepG2PKM
LPGAT1ENSG00000123684.81247.564701637.78350-0.392605.147804.17040HepG2PPIL4
LPGAT1ENSG00000123684.82231.821101573.832200.5038010.216708.86710HepG2PRPF4
LPGAT1ENSG00000123684.82428.633001194.526401.0236018.5298016.70930HepG2PRPF8
LPGAT1ENSG00000123684.82807.577302214.454400.342303.353802.70650HepG2PUF60
LPGAT1ENSG00000123684.81932.708202350.68790-0.282505.094704.33980HepG2PUM1
LPGAT1ENSG00000123684.83038.277702382.331600.350804.495503.72640HepG2QKI
LPGAT1ENSG00000123684.83361.755801928.251300.801805.816704.81970HepG2RAVER1
LPGAT1ENSG00000123684.82770.159502315.027700.258802.585901.75520HepG2RBM15
LPGAT1ENSG00000123684.82044.094702793.12110-0.450405.406004.74220HepG2RBM22
LPGAT1ENSG00000123684.84082.470502162.109700.9169020.9923019.24280HepG2RBM25
LPGAT1ENSG00000123684.82676.304402280.000200.231102.867202.24140HepG2RECQL
LPGAT1ENSG00000123684.82310.832501852.587100.318802.233801.61070HepG2RPLP0
LPGAT1ENSG00000123684.8925.752701179.52690-0.349502.799702.18130HepG2RPS19
LPGAT1ENSG00000123684.82713.426701748.823300.633608.940707.74110HepG2SF3B1
LPGAT1ENSG00000123684.82716.344302123.207300.355307.301606.24590HepG2SLBP
LPGAT1ENSG00000123684.81559.709201907.05010-0.290104.867604.05360HepG2SMN1
LPGAT1ENSG00000123684.83634.596002390.433900.6044018.7685017.76460HepG2SRSF1
LPGAT1ENSG00000123684.82099.997301689.520000.313704.159603.33260HepG2SRSF7
LPGAT1ENSG00000123684.82957.952101944.738000.604909.123008.22450HepG2SRSF9
LPGAT1ENSG00000123684.83587.730202739.210200.389208.816008.00110HepG2SSB
LPGAT1ENSG00000123684.83181.033701802.006100.819807.701805.76330HepG2SUB1
LPGAT1ENSG00000123684.81845.329001407.675200.390504.529903.34080HepG2SUPT6H
LPGAT1ENSG00000123684.82818.723401540.999400.8711013.0396011.75230HepG2SUPV3L1
LPGAT1ENSG00000123684.82808.975302148.591500.386605.752604.99510HepG2TAF15
LPGAT1ENSG00000123684.82533.265801722.116300.556707.033605.95050HepG2TARDBP
LPGAT1ENSG00000123684.82478.200001974.288000.327903.526102.58670HepG2TIA1
LPGAT1ENSG00000123684.81268.793301784.40890-0.492007.066206.33420HepG2TIAL1
LPGAT1ENSG00000123684.81413.113401800.18600-0.349305.354604.62100HepG2TRIM56
LPGAT1ENSG00000123684.82853.317101783.239900.678009.456708.28160HepG2U2AF1
LPGAT1ENSG00000123684.83411.009502289.805500.574905.770504.53310HepG2UBE2L3
LPGAT1ENSG00000123684.8700.05040910.41230-0.379101.966801.32700HepG2UCHL5
LPGAT1ENSG00000123684.82525.160802185.564000.208302.678701.98920HepG2UPF1
LPGAT1ENSG00000123684.81315.200602110.07870-0.6820017.6731016.35500HepG2UTP3
LPGAT1ENSG00000123684.81381.798601912.14250-0.468603.012401.86290HepG2XPO5
LPGAT1ENSG00000123684.81468.284002120.59910-0.530303.573602.37010HepG2XRCC6
LPGAT1ENSG00000123684.81168.798701553.12370-0.410106.983305.99560HepG2ZC3H8
LPGAT1ENSG00000123684.82917.648401926.546600.598704.867003.09400HepG2ZRANB2
LPGAT1ENSG00000123684.82472.828002027.416900.286401.980601.46890K562AQR
LPGAT1ENSG00000123684.81108.50480902.019000.297302.307401.58470K562CPSF6
LPGAT1ENSG00000123684.82183.675301800.460200.278303.688802.95080K562DDX47
LPGAT1ENSG00000123684.81481.687001091.323700.441103.091701.99580K562EIF3D
LPGAT1ENSG00000123684.82646.243302323.341700.187602.147901.31480K562EIF4G2
LPGAT1ENSG00000123684.8846.850201100.35720-0.377803.460701.98660K562EWSR1
LPGAT1ENSG00000123684.8859.702101260.05370-0.551605.803804.54420K562FIP1L1
LPGAT1ENSG00000123684.82091.919901294.159700.692703.297402.51240K562G3BP2
LPGAT1ENSG00000123684.8740.387901036.37300-0.485203.537702.47190K562HNRNPM
LPGAT1ENSG00000123684.81168.659201662.93180-0.508905.753803.92920K562IGF2BP3
LPGAT1ENSG00000123684.81162.85590910.760200.352402.654001.30310K562LARP7
LPGAT1ENSG00000123684.81219.305701679.61730-0.462105.660803.65860K562PCBP1
LPGAT1ENSG00000123684.8958.447001502.37560-0.648506.796204.27580K562PKM
LPGAT1ENSG00000123684.82829.153902387.282100.244902.738501.30720K562PNPT1
LPGAT1ENSG00000123684.81022.064201430.35370-0.484904.745203.62930K562PPIG
LPGAT1ENSG00000123684.81343.11720991.931000.437203.558702.70680K562PRPF8
LPGAT1ENSG00000123684.8651.10700843.29780-0.373102.205801.40640K562PSIP1
LPGAT1ENSG00000123684.81686.636202114.50720-0.326202.868902.31820K562PUS1
LPGAT1ENSG00000123684.81522.943201228.102300.310302.754301.42700K562RBM25
LPGAT1ENSG00000123684.81346.821101684.98690-0.323202.363301.36960K562NELFE
LPGAT1ENSG00000123684.8878.822701387.74060-0.6591011.7631010.18090K562SF3A3
LPGAT1ENSG00000123684.81184.82290818.969600.532704.167002.95390K562SF3B1
LPGAT1ENSG00000123684.81036.942501642.56460-0.663602.703101.42230K562SFPQ
LPGAT1ENSG00000123684.8554.54840729.35480-0.395302.647401.65080K562SRFBP1
LPGAT1ENSG00000123684.81252.268201636.72720-0.386303.956403.11690K562SRSF1
LPGAT1ENSG00000123684.81239.53700928.737200.416404.398603.35800K562SYNCRIP
LPGAT1ENSG00000123684.8508.57090811.11370-0.673505.835404.42290K562TIAL1
LPGAT1ENSG00000123684.81873.788301296.025400.531807.945706.57500K562U2AF2
LPGAT1ENSG00000123684.81199.338801491.25780-0.314303.896903.05670K562UPF1
LPGAT1ENSG00000123684.8806.760901276.02560-0.661409.200307.56380K562WDR3
LPGAT1ENSG00000123684.81662.074101326.894900.324804.783903.69840K562WDR43
LPGAT1ENSG00000123684.81529.355202283.87010-0.578607.847806.27320K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LPGAT1 is not available on ENCORE database.





8 RBPs can affect the splicing of LPGAT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELPGAT1ENSG00000123684.8chr1-2119609732119610692119565702119568442119664132119665320.110000.000150.03639includedK562FTO
SELPGAT1ENSG00000123684.8chr1-211960973211961069211956570211956844211966413211966532-0.088000.002020.03676excludedHepG2U2AF1
SELPGAT1ENSG00000123684.8chr1-2119609732119610692119565702119568442119664132119665320.100000.000110.01780includedK562FMR1
SELPGAT1ENSG00000123684.8chr1-211960973211961069211956570211956844211966413211966532-0.175000.000000.00000excludedHepG2U2AF2
SELPGAT1ENSG00000123684.8chr1-2119609732119610692119565702119568442119664132119665320.117000.000020.00918includedK562METAP2
SELPGAT1ENSG00000123684.8chr1-2119609732119610692119565702119568442119664132119665320.099000.000040.00780includedK562CPSF6
SELPGAT1ENSG00000123684.8chr1-2119609732119610692119565702119568442119664132119665320.091000.000710.03067includedK562SF3B1
A3SSLPGAT1ENSG00000123684.8chr1-2119522592119524072119522592119523862119565702119568440.169000.000000.00003longerK562AQR
MXELPGAT1ENSG00000123684.8chr1-211956570211956844211960973211961069211952259211952386211966413211966532-0.207000.000010.000172includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LPGAT1 is not avaliable on ENCORE database.