KCNC3

General Information

Gene Name       : KCNC3
Gene ID             : ENSG00000131398.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KCNC3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KCNC3ENSG00000131398.130.671.020.84ENCSR000AEF
HepG2KCNC3ENSG00000131398.133.082.442.76ENCSR985KAT
K562KCNC3ENSG00000131398.1311.849.9910.91ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KCNC3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • KCNC3 RNA is bound by 15 proteins.  







eCLIP assay for KCNC3 is not avaliable on ENCORE database.





15 proteins are bound to KCNC3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr195081763350817713-3'-UTR,intron-Distal3.511469.79043HepG2RBFOX2
chr195081558750815663-3'-UTR,intron-Distal3.210383.23466HepG2CSTF2T
chr195081870950818782-3'-UTR,intron-Distal,intron-Proximal3.640014.84707HepG2HNRNPK
chr195081602550816137-3'-UTR,intron-Distal5.152386.43928K562GTF2F1
chr195081872750818827-3'-UTR,intron-Distal,intron-Proximal4.726263.34601K562HNRNPK
chr195081771350817789-3'-UTR,intron-Distal5.240737.20537HepG2RBFOX2
chr195081607750816139-3'-UTR,intron-Distal3.321253.72734HepG2CSTF2T
chr195081824650818301-3'-UTR,CDS,intron-Distal5.195195.77028HepG2PCBP2
chr195081557850815732-3'-UTR,intron-Distal3.392657.76520HepG2RBFOX2
chr195081931050819363-3'-UTR,CDS,intron-Distal,intron-Proximal4.362667.59655HepG2DDX59
chr195081624850816332-3'-UTR,intron-Distal4.975235.81696HepG2XRN2
chr195081742950817468-3'-UTR,intron-Distal3.080563.27165HepG2RBFOX2
chr195081708850817158-3'-UTR,intron-Distal4.505613.82414HepG2HNRNPK
chr195081608450816127-3'-UTR,intron-Distal5.086433.46375HepG2XRN2
chr195081912450819276-3'-UTR,intron-Distal,intron-Proximal4.8357122.23586HepG2DDX59
chr195081542150815492-3'-UTR,intron-Distal4.256673.19125K562GTF2F1
chr195081909650819166-3'-UTR,intron-Distal3.264104.04583HepG2XPO5
chr195081607450816129-3'-UTR,intron-Distal4.241254.27402K562CSTF2T
chr195081601950816130-3'-UTR,intron-Distal3.556374.14505K562RBFOX2
chr195081692850816974-3'-UTR,intron-Distal3.985533.31570HepG2HNRNPK
chr195081542250815511-3'-UTR,intron-Distal4.827566.10679HepG2RBFOX2
chr195081716950817230-3'-UTR,intron-Distal4.393324.58231HepG2HNRNPK
chr195081688450816967-3'-UTR,intron-Distal4.759354.47904K562HNRNPK
chr195082401950824084-3'-UTR,CDS,intron-Distal,intron-Proximal5.799477.63570K562AQR
chr195081757150817693-3'-UTR,intron-Distal4.983367.91254K562RBFOX2
chr195081541550815489-3'-UTR,intron-Distal4.408843.20376K562XRN2
chr195082383950823967-CDS,intron-Distal,intron-Proximal4.054084.01763HepG2GRWD1
chr195082621550826233-CDS,intron-Distal,intron-Proximal5.027314.86944K562AQR
chr195081951250819585-intron-Distal5.2008015.70711HepG2PCBP2
chr195082012650820139-intron-Distal3.388703.83206HepG2ILF3
chr195082321950823371-intron-Distal3.589905.84135HepG2PCBP2
chr195082324750823303-intron-Distal5.559606.85401K562QKI
chr195082034650820420-intron-Distal5.8501113.12736HepG2PCBP2
chr195082335150823444-intron-Distal,intron-Proximal5.6441016.61164HepG2QKI
chr195082013250820154-intron-Distal3.409216.30183HepG2DDX59
chr195081837850818479-intron-Distal3.3888014.56811K562PTBP1
chr195082013950820160-intron-Distal3.413084.01628HepG2ILF3
chr195082334550823433-intron-Distal,intron-Proximal4.092593.31570HepG2HNRNPK
chr195081826650818403-intron-Distal4.3428915.74912HepG2PTBP1
chr195082021750820277-intron-Distal3.779343.00349HepG2ILF3
chr195081936550819385-intron-Distal,intron-Proximal3.897833.33062K562ILF3
chr195082417650824312-intron-Distal4.550416.11268HepG2HNRNPK
chr195082036950820403-intron-Distal3.410343.59765K562ILF3
chr195082007050820138-intron-Distal4.340393.34601K562HNRNPK
chr195082001050820071-intron-Distal5.6106911.06447HepG2PCBP2
chr195082021950820270-intron-Distal4.278594.55788HepG2QKI
chr195081958550819699-intron-Distal5.1045719.12126HepG2PCBP2
chr195082073850820880-intron-Distal3.372776.62443K562CSTF2T
chr195082005750820118-intron-Distal3.561963.60809HepG2HNRNPK
chr195082036550820465-intron-Distal5.058139.01744HepG2HNRNPK
chr195082612550826183-intron-Distal,intron-Proximal4.784594.09264K562AQR
chr195081853850818597-intron-Distal4.614476.94678HepG2DDX59
chr195081828450818420-intron-Distal4.015273.62025K562MATR3
chr195082365350823740-intron-Distal,intron-Proximal5.240706.65725HepG2DDX59
chr195082011850820173-intron-Distal6.2186016.44511HepG2PCBP2
chr195082012950820154-intron-Distal5.061126.40009HepG2GTF2F1
chr195081950650819567-intron-Distal3.377515.85087K562ILF3
chr195081828450818378-intron-Distal3.8823228.42450K562PTBP1
chr195081949750819598-intron-Distal6.5891621.31679HepG2DDX59
chr195082088350820973-intron-Distal3.322083.62708K562CSTF2T
chr195082618350826215-intron-Distal,intron-Proximal5.530168.03507K562AQR
chr195081951850819571-intron-Distal4.631055.31936HepG2HNRNPK
chr195082087050820959-intron-Distal4.310137.76905K562GTF2F1
chr195082038050820445-intron-Distal4.2149310.23922HepG2DDX59
chr195082019450820275-intron-Distal3.356565.34585K562CSTF2T
chr195081951250819600-intron-Distal4.234835.86001HepG2CSTF2T
chr195082321650823351-intron-Distal7.4633433.01217HepG2QKI
chr195082246350822509-intron-Distal3.952553.05187HepG2QKI
chr195082515250825296-intron-Distal3.976993.89149HepG2HNRNPK
chr195082017750820275-intron-Distal6.3416313.96043K562GTF2F1
chr195082007750820118-intron-Distal4.545418.88051HepG2PCBP2
chr195082613050826176-intron-Distal,intron-Proximal4.334664.53454K562PRPF8
chr195082022550820269-intron-Distal5.736899.78105HepG2DDX59
chr195081840350818479-intron-Distal3.572925.50064HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KCNC3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KCNC3 is not available on ENCORE database.

  • 126 RBPs can affect the levels of KCNC3.  








The Knockdown/knockout RNA-Seq assay for KCNC3 is not available on ENCORE database.





126 RBPs can affect the gene expression of KCNC3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KCNC3ENSG00000131398.9101.84370227.56500-1.159909.536208.54630HepG2ACO1
KCNC3ENSG00000131398.983.95900133.82700-0.672602.251701.35200HepG2ADAR
KCNC3ENSG00000131398.9187.8511093.260501.010204.845003.81880HepG2ASCC1
KCNC3ENSG00000131398.9163.99540248.48840-0.599502.872102.17470HepG2AUH
KCNC3ENSG00000131398.9263.74440162.346800.700002.836401.88590HepG2BCCIP
KCNC3ENSG00000131398.9188.38270295.93420-0.651603.766002.88630HepG2CALR
KCNC3ENSG00000131398.9532.80160358.495700.571503.103402.06720HepG2CCAR1
KCNC3ENSG00000131398.9506.58470350.047200.533203.433902.67570HepG2CPSF6
KCNC3ENSG00000131398.9413.74960298.889800.469002.528801.47110HepG2CPSF7
KCNC3ENSG00000131398.9337.54380229.823100.554503.074201.71210HepG2DDX47
KCNC3ENSG00000131398.9576.24030330.791100.800707.424705.84290HepG2DDX5
KCNC3ENSG00000131398.9172.8708092.764000.898003.549002.85740HepG2DDX6
KCNC3ENSG00000131398.9229.78740134.761700.769804.704803.80830HepG2DNAJC21
KCNC3ENSG00000131398.9212.05130133.561800.666803.910203.16240HepG2DNAJC2
KCNC3ENSG00000131398.9363.4442089.158302.0272022.5000020.91960HepG2EIF2S1
KCNC3ENSG00000131398.9261.69170171.620300.608503.362202.18830HepG2EIF3G
KCNC3ENSG00000131398.9453.6629098.521702.2030028.3711026.36150HepG2EIF4A3
KCNC3ENSG00000131398.9204.7982095.941301.093904.787903.89830HepG2EIF4B
KCNC3ENSG00000131398.9438.82480285.330200.620905.295304.51080HepG2ETF1
KCNC3ENSG00000131398.9357.38900222.348800.684604.781103.68910HepG2EWSR1
KCNC3ENSG00000131398.9166.51970366.57590-1.138407.898906.67150HepG2FIP1L1
KCNC3ENSG00000131398.9562.33390350.658900.681302.239701.33490HepG2FTO
KCNC3ENSG00000131398.9119.63710212.66780-0.829903.604402.33050HepG2FUS
KCNC3ENSG00000131398.9193.7205099.430600.962104.589503.71470HepG2FXR1
KCNC3ENSG00000131398.9425.7800092.222602.2068028.8212026.75630HepG2G3BP1
KCNC3ENSG00000131398.9279.4922097.924301.5130012.0938010.24030HepG2G3BP2
KCNC3ENSG00000131398.9232.17520139.858900.731103.456602.44280HepG2GEMIN5
KCNC3ENSG00000131398.9102.04440159.10740-0.640802.237801.32570HepG2GNB2L1
KCNC3ENSG00000131398.9262.41890396.79040-0.596503.198202.51450HepG2GPKOW
KCNC3ENSG00000131398.9156.20870217.24380-0.475802.382101.46900HepG2HDGF
KCNC3ENSG00000131398.9215.50700136.052600.663502.893602.23300HepG2HNRNPA1
KCNC3ENSG00000131398.9469.79890151.330101.6342020.2169018.51640HepG2HNRNPC
KCNC3ENSG00000131398.9320.63330182.477900.813103.658902.84400HepG2HNRNPF
KCNC3ENSG00000131398.9383.0816093.416202.0358023.8455021.98970HepG2HNRNPK
KCNC3ENSG00000131398.9335.33310236.367700.504503.738502.96230HepG2HNRNPL
KCNC3ENSG00000131398.9317.90690179.682600.823103.791502.95470HepG2IGF2BP1
KCNC3ENSG00000131398.9321.9307093.737301.780005.607404.67750HepG2IGF2BP2
KCNC3ENSG00000131398.9270.7768094.293001.5218010.291708.27710HepG2KHSRP
KCNC3ENSG00000131398.9498.31690281.112800.825805.421003.66600HepG2KRR1
KCNC3ENSG00000131398.9203.01370296.59920-0.546902.971102.13360HepG2MSI2
KCNC3ENSG00000131398.9306.27110102.370401.5809013.1653011.84560HepG2NCBP2
KCNC3ENSG00000131398.9419.74600266.587600.654803.408701.81270HepG2NKRF
KCNC3ENSG00000131398.9168.49810257.31780-0.610803.240902.41770HepG2NOL12
KCNC3ENSG00000131398.9717.00920335.770801.094406.188805.09650HepG2NSUN2
KCNC3ENSG00000131398.9259.0864077.573201.7397011.331509.50760HepG2PABPC1
KCNC3ENSG00000131398.9279.8282091.151401.6181013.8760012.28920HepG2PABPC4
KCNC3ENSG00000131398.9196.4861091.722701.099007.468306.54950HepG2PCBP1
KCNC3ENSG00000131398.9128.00850201.29620-0.653102.422301.44620HepG2PCBP2
KCNC3ENSG00000131398.9437.52180291.560500.585503.110602.29540HepG2PRPF4
KCNC3ENSG00000131398.9417.40870211.588900.980106.296904.52830HepG2PRPF6
KCNC3ENSG00000131398.971.71930123.12180-0.779702.346701.59930HepG2PRPF8
KCNC3ENSG00000131398.9289.2533093.344701.6316017.8892016.72590HepG2PTBP1
KCNC3ENSG00000131398.9126.32400260.57720-1.044607.219906.15390HepG2PUM2
KCNC3ENSG00000131398.9299.37640231.786000.369101.936301.40160HepG2PUS1
KCNC3ENSG00000131398.9257.33020101.066001.3482010.599309.49070HepG2QKI
KCNC3ENSG00000131398.942.59750194.18150-2.1886011.7256010.34990HepG2RAVER1
KCNC3ENSG00000131398.9124.72170238.47650-0.935106.247005.54450HepG2RBM22
KCNC3ENSG00000131398.9355.6247091.734701.9547017.5563015.95850HepG2RBM25
KCNC3ENSG00000131398.9411.87130157.302901.388504.621502.42520HepG2RBM39
KCNC3ENSG00000131398.9235.57420152.641200.625902.595101.57030HepG2RCC2
KCNC3ENSG00000131398.9379.02730103.872501.8674025.1141023.81000HepG2NELFE
KCNC3ENSG00000131398.9291.1075096.763401.5889016.7169015.41060HepG2RECQL
KCNC3ENSG00000131398.9228.7993085.189301.425208.853207.45120HepG2RPS3A
KCNC3ENSG00000131398.932.42940121.79150-1.909008.381207.10980HepG2RRP9
KCNC3ENSG00000131398.9194.82790611.56120-1.6503020.4048018.52840HepG2SF3A3
KCNC3ENSG00000131398.9190.5533097.159800.971704.155303.45430HepG2SF3B4
KCNC3ENSG00000131398.9309.79450235.563500.395102.355401.70040HepG2SLBP
KCNC3ENSG00000131398.9330.03010154.478901.095103.256801.81150HepG2SNRNP200
KCNC3ENSG00000131398.9190.72310417.02880-1.128707.204205.93760HepG2SNRNP70
KCNC3ENSG00000131398.9156.53360269.33860-0.782905.455604.81710HepG2SRFBP1
KCNC3ENSG00000131398.9156.03460101.423600.621402.412301.96270HepG2SRSF1
KCNC3ENSG00000131398.9157.97580242.55490-0.618603.253902.58480HepG2SRSF5
KCNC3ENSG00000131398.9377.59290179.299401.074405.121404.22070HepG2SRSF7
KCNC3ENSG00000131398.9263.1092082.522001.6727019.3054018.09040HepG2SRSF9
KCNC3ENSG00000131398.9313.61650233.829000.423402.285601.80970HepG2SSB
KCNC3ENSG00000131398.9430.78780280.358200.619603.732802.26060HepG2SSRP1
KCNC3ENSG00000131398.9474.11580244.772000.953706.792604.96680HepG2STAU1
KCNC3ENSG00000131398.9159.07630275.83730-0.794105.476004.65520HepG2SUCLG1
KCNC3ENSG00000131398.9250.54670158.898400.656902.460301.81770HepG2SUPV3L1
KCNC3ENSG00000131398.9542.08660369.122800.554302.333101.66030HepG2TARDBP
KCNC3ENSG00000131398.9172.3844083.763001.041106.007704.78330HepG2TIA1
KCNC3ENSG00000131398.9254.50190147.378500.788105.776205.01520HepG2TRIM56
KCNC3ENSG00000131398.9122.68150313.53440-1.3537011.145809.86220HepG2U2AF1
KCNC3ENSG00000131398.9764.20560523.629400.545306.447305.59640HepG2UTP3
KCNC3ENSG00000131398.9190.5160076.301201.320007.424205.63650HepG2XPO5
KCNC3ENSG00000131398.9108.13310191.07730-0.821302.845501.56420HepG2XRCC5
KCNC3ENSG00000131398.9251.69460156.418100.686202.839802.10660HepG2XRN2
KCNC3ENSG00000131398.9262.24190596.49410-1.1856023.1460021.94760HepG2ZNF622
KCNC3ENSG00000131398.9354.83050539.00920-0.603203.067202.47420K562AGGF1
KCNC3ENSG00000131398.9735.00390534.831600.458604.413602.69910K562BCCIP
KCNC3ENSG00000131398.91196.37630584.555401.033207.247305.33250K562CCAR1
KCNC3ENSG00000131398.9874.166401090.18090-0.318602.861101.32610K562CEBPZ
KCNC3ENSG00000131398.91983.244601308.223400.600204.441503.01900K562CPEB4
KCNC3ENSG00000131398.91054.898701425.78630-0.434704.917703.87860K562CPSF6
KCNC3ENSG00000131398.9642.85130453.217100.504205.456403.59250K562DDX27
KCNC3ENSG00000131398.9422.41940240.524500.812405.103803.62940K562DDX3X
KCNC3ENSG00000131398.92051.681601354.275700.599203.022002.34440K562DDX47
KCNC3ENSG00000131398.91267.59040654.527000.953505.055903.14950K562DHX30
KCNC3ENSG00000131398.9207.51740476.44400-1.1991011.186508.78250K562EEF2
KCNC3ENSG00000131398.9316.96180460.28090-0.538203.609202.55590K562EFTUD2
KCNC3ENSG00000131398.9464.42960264.140900.814109.022406.78010K562EIF2S1
KCNC3ENSG00000131398.91362.15480594.546201.195904.373403.08330K562EIF3A
KCNC3ENSG00000131398.9612.70180279.285001.1333017.8656015.77020K562EIF3G
KCNC3ENSG00000131398.9341.96090251.268400.444502.189601.45600K562EIF4A3
KCNC3ENSG00000131398.91279.74090983.420100.379903.946502.82860K562EIF4G2
KCNC3ENSG00000131398.9757.787001150.77990-0.602702.642101.81330K562FIP1L1
KCNC3ENSG00000131398.9619.99350261.305101.2464020.6090019.07020K562FXR1
KCNC3ENSG00000131398.980.85640169.39800-1.067004.819203.82630K562G3BP2
KCNC3ENSG00000131398.9756.44890461.472400.712906.071103.96930K562GEMIN5
KCNC3ENSG00000131398.91399.45890945.876700.565007.494605.67490K562GLRX3
KCNC3ENSG00000131398.91475.610401018.448700.534806.264905.12220K562GRSF1
KCNC3ENSG00000131398.91056.27300523.861501.0116016.5737015.19040K562HNRNPC
KCNC3ENSG00000131398.9688.48580467.841800.557304.787203.23610K562HNRNPF
KCNC3ENSG00000131398.9379.42260256.424000.565203.142701.82140K562HNRNPK
KCNC3ENSG00000131398.9520.21460946.44190-0.863404.991303.69660K562HNRNPM
KCNC3ENSG00000131398.9780.610601560.34080-0.999206.964605.71250K562HSPD1
KCNC3ENSG00000131398.9354.52900595.27650-0.747702.925002.07460K562KIF1C
KCNC3ENSG00000131398.9863.62560531.384600.700506.581404.14760K562LIN28B
KCNC3ENSG00000131398.9354.28660269.867200.392602.056701.32740K562MAGOH
KCNC3ENSG00000131398.9348.86280569.75610-0.707702.849401.75480K562MAK16
KCNC3ENSG00000131398.9502.63150269.298500.900209.946508.09050K562MATR3
KCNC3ENSG00000131398.91864.766301328.741500.488803.555902.55630K562METAP2
KCNC3ENSG00000131398.91526.023001048.266600.541706.145704.47890K562MSI2
KCNC3ENSG00000131398.91726.75580994.449900.7960014.6419012.95490K562MTPAP
KCNC3ENSG00000131398.9296.05970467.40450-0.658802.704901.83320K562NAA15
KCNC3ENSG00000131398.91782.142501030.084800.790702.962801.68030K562PABPC1
KCNC3ENSG00000131398.9136.90590240.08960-0.810404.358703.12500K562PCBP2
KCNC3ENSG00000131398.9792.57210511.476700.631805.776203.64120K562PHF6
KCNC3ENSG00000131398.9936.634701306.23150-0.479902.712401.90160K562PPIG
KCNC3ENSG00000131398.91675.82980954.544300.811905.270302.76260K562PPIL4
KCNC3ENSG00000131398.9213.26660447.90880-1.070509.682608.27390K562PRPF8
KCNC3ENSG00000131398.91013.90140469.705801.1100014.3777011.97140K562PSIP1
KCNC3ENSG00000131398.9739.98460262.203201.4967024.7707022.86340K562PTBP1
KCNC3ENSG00000131398.9333.63730541.95700-0.699903.195602.56580K562RBM15
KCNC3ENSG00000131398.9454.29060251.345600.853807.938906.41820K562RBM22
KCNC3ENSG00000131398.9714.27240428.589700.736808.371406.64010K562RCC2
KCNC3ENSG00000131398.9833.12030264.518801.6551024.1666021.06860K562NELFE
KCNC3ENSG00000131398.91846.93860957.066100.948307.522404.81000K562RPS3A
KCNC3ENSG00000131398.9641.90320328.537400.966208.931907.01630K562RPS3
KCNC3ENSG00000131398.9276.06630457.89140-0.730004.344702.67310K562RRP9
KCNC3ENSG00000131398.9710.43260406.287100.806108.680506.57490K562SRFBP1
KCNC3ENSG00000131398.91418.575201116.954300.344802.576101.66800K562SRPK2
KCNC3ENSG00000131398.9385.44540257.062200.584303.858803.02980K562SRSF1
KCNC3ENSG00000131398.9579.12120317.110300.868803.002601.89460K562SRSF4
KCNC3ENSG00000131398.9293.10320499.09960-0.767903.071801.54240K562SUPT6H
KCNC3ENSG00000131398.9392.90200260.130100.594803.782602.94950K562TARDBP
KCNC3ENSG00000131398.9873.01100451.773100.9503011.032709.06260K562TIAL1
KCNC3ENSG00000131398.9878.80270479.999600.8724011.289609.09710K562TRIM56
KCNC3ENSG00000131398.9983.270201251.85780-0.348402.547001.33380K562TROVE2
KCNC3ENSG00000131398.972.64620164.27350-1.177105.656603.97280K562U2AF1
KCNC3ENSG00000131398.964.01570169.63530-1.405908.943407.49070K562U2AF2
KCNC3ENSG00000131398.91570.100301209.617400.376204.300002.54690K562UBE2L3
KCNC3ENSG00000131398.9693.95870458.918500.596504.565203.22470K562UCHL5
KCNC3ENSG00000131398.91674.672701042.472000.683809.870808.38200K562WDR43
KCNC3ENSG00000131398.91300.92460847.683900.617803.929502.37990K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KCNC3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of KCNC3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for KCNC3 is not avaliable on ENCORE database.