IRF9

General Information

Gene Name       : IRF9
Gene ID             : ENSG00000213928.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: IRF9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878IRF9ENSG00000213928.8121.0795.39108.23ENCSR000AEF
HepG2IRF9ENSG00000213928.819.2420.5319.88ENCSR985KAT
K562IRF9ENSG00000213928.85.114.995.05ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for IRF9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • IRF9 RNA is bound by 13 proteins.  







eCLIP assay for IRF9 is not avaliable on ENCORE database.





13 proteins are bound to IRF9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr142463502224635113+3'-UTR,CDS,intron-Proximal3.1481310.85605HepG2U2AF2
chr142463415824634197+3'-UTR,CDS,intron-Distal,intron-Proximal3.540245.90285HepG2PRPF8
chr142463219424632250+3'-UTR,5'-UTR,CDS5.393378.65687HepG2PPIG
chr142463220024632256+3'-UTR,5'-UTR,CDS4.090294.31828HepG2SRSF1
chr142463261724632720+3'-UTR,5'-UTR,CDS,intron-Proximal3.7545110.46300HepG2PPIG
chr142463501224635102+3'-UTR,CDS,intron-Proximal5.0034211.07190HepG2SF3A3
chr142463377224633856+3'-UTR,CDS,intron-Distal,intron-Proximal4.033765.10493HepG2AQR
chr142463382824633884+3'-UTR,CDS,intron-Distal5.009896.56499HepG2PPIG
chr142463381524633870+3'-UTR,CDS,intron-Distal,intron-Proximal4.218727.77750HepG2PRPF8
chr142463219724632264+3'-UTR,5'-UTR,CDS3.317304.34695HepG2BCLAF1
chr142463266124632710+3'-UTR,5'-UTR,CDS4.134583.38114HepG2GRWD1
chr142463127624631378+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.555968.59763HepG2SF3A3
chr142463135624631455+3'-UTR,CDS,intron-Distal3.687969.40911HepG2PPIG
chr142463515324635215+3'-UTR,CDS,intron-Proximal5.4588027.20494HepG2PRPF8
chr142463149524631577+3'-UTR,CDS,intron-Distal,intron-Proximal5.6456923.33766HepG2PRPF8
chr142463372924633807+CDS,intron-Distal,intron-Proximal4.158643.83824K562BUD13
chr142463511724635148+3'-UTR,CDS4.313734.38106HepG2PPIG
chr142463428124634318+CDS,intron-Distal4.154764.24431HepG2RBFOX2
chr142463416424634229+intron-Distal,intron-Proximal4.623634.09264K562AQR
chr142463123524631292+intron-Distal,intron-Proximal4.122233.31322HepG2SF3B4
chr142463419724634255+intron-Distal,intron-Proximal3.193266.93483HepG2PRPF8
chr142463521724635305+intron-Proximal3.370986.01692HepG2SF3B4
chr142463335924633431+intron-Proximal5.6442624.74052K562TIA1
chr142463335324633416+intron-Proximal3.452775.64887HepG2TIA1
chr142463335724633414+intron-Proximal4.0778610.31271HepG2TIAL1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for IRF9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for IRF9 is not available on ENCORE database.

  • 126 RBPs can affect the levels of IRF9.  








The Knockdown/knockout RNA-Seq assay for IRF9 is not available on ENCORE database.





126 RBPs can affect the gene expression of IRF9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
IRF9ENSG00000213928.4355.04280247.500100.520502.887001.79540HepG2AATF
IRF9ENSG00000213928.4693.48350302.616401.1963024.7635023.35690HepG2ACO1
IRF9ENSG00000213928.4977.07920366.122501.4160018.7330017.47820HepG2AKAP1
IRF9ENSG00000213928.4736.69430513.107600.521703.273202.14650HepG2AKAP8
IRF9ENSG00000213928.4759.91680304.082301.3213029.1681027.07390HepG2AKAP8L
IRF9ENSG00000213928.4940.50770302.908001.6345028.2552026.14860HepG2ASCC1
IRF9ENSG00000213928.4768.82190409.668900.908107.551606.50840HepG2AUH
IRF9ENSG00000213928.4435.45170288.099100.595802.666201.74820HepG2BCCIP
IRF9ENSG00000213928.4434.26570250.303900.794804.916603.74810HepG2BCLAF1
IRF9ENSG00000213928.4212.84450369.46590-0.795605.643704.82570HepG2BOP1
IRF9ENSG00000213928.4567.19170341.906900.730106.633904.79750HepG2BUD13
IRF9ENSG00000213928.4463.66590310.472300.578503.779602.89810HepG2CALR
IRF9ENSG00000213928.41646.96370510.158101.6907028.8529025.98880HepG2CCAR1
IRF9ENSG00000213928.4434.18450302.603700.520804.488003.67990HepG2CKAP4
IRF9ENSG00000213928.4465.44310339.191700.456402.367301.72420HepG2CPSF6
IRF9ENSG00000213928.4552.03780375.802900.554703.925902.61700HepG2CPSF7
IRF9ENSG00000213928.4901.53360423.673301.0893023.8633022.35700HepG2CELF1
IRF9ENSG00000213928.4522.05300272.743100.936609.602908.41880HepG2DDX21
IRF9ENSG00000213928.41063.20410350.658401.6002027.6302025.87810HepG2DDX3X
IRF9ENSG00000213928.41545.36910283.277702.4476046.9436044.44900HepG2DDX55
IRF9ENSG00000213928.4672.07280301.362501.1570011.3490010.19750HepG2DDX6
IRF9ENSG00000213928.4404.05230289.535600.480702.381101.74540HepG2DKC1
IRF9ENSG00000213928.4515.53060292.349100.818309.470008.23010HepG2DNAJC21
IRF9ENSG00000213928.4381.18450289.732600.395702.004201.43250HepG2DNAJC2
IRF9ENSG00000213928.4390.59610279.809200.481102.472301.42400HepG2EFTUD2
IRF9ENSG00000213928.4386.72800251.383500.621302.396801.37040HepG2AGO1
IRF9ENSG00000213928.4515.96590289.568400.833304.204803.48210HepG2EIF2S1
IRF9ENSG00000213928.4518.31240346.184000.582204.171302.74630HepG2EIF2S2
IRF9ENSG00000213928.4373.84880272.481000.456202.147701.34230HepG2EIF3D
IRF9ENSG00000213928.4473.00510319.940100.564002.857802.20890HepG2EIF4A3
IRF9ENSG00000213928.4484.05830311.634600.635203.206802.46890HepG2EIF4B
IRF9ENSG00000213928.4648.65780449.419000.529305.915304.77220HepG2EIF4G1
IRF9ENSG00000213928.4844.03210470.405500.8433013.3427012.18640HepG2ETF1
IRF9ENSG00000213928.4407.24540295.757400.461402.761001.92740HepG2EWSR1
IRF9ENSG00000213928.4337.37150243.572700.469902.606701.47490HepG2FAM120A
IRF9ENSG00000213928.4836.96500460.873500.860707.474606.27300HepG2FIP1L1
IRF9ENSG00000213928.4567.21900339.769300.739302.609001.62380HepG2FTO
IRF9ENSG00000213928.4471.46360297.949200.662003.653502.37270HepG2FUS
IRF9ENSG00000213928.4516.35460323.009100.676704.745703.85570HepG2FXR1
IRF9ENSG00000213928.4667.91840299.531501.1569012.9896011.60400HepG2G3BP1
IRF9ENSG00000213928.4198.74110318.13060-0.678703.013202.08370HepG2G3BP2
IRF9ENSG00000213928.4644.66970295.667401.1245012.9560010.77100HepG2GNB2L1
IRF9ENSG00000213928.4845.91640384.505201.137406.203705.27130HepG2GPKOW
IRF9ENSG00000213928.4485.96460288.944200.750008.825407.20490HepG2HDGF
IRF9ENSG00000213928.4638.09270418.625000.608007.231705.84210HepG2HNRNPA2B1
IRF9ENSG00000213928.4581.14590328.287700.823807.599306.49650HepG2HNRNPC
IRF9ENSG00000213928.4672.46310303.552101.1474013.8846012.43820HepG2HNRNPK
IRF9ENSG00000213928.4583.20910414.859500.491305.485904.56450HepG2HNRNPL
IRF9ENSG00000213928.4438.03030317.935400.462202.690101.75100HepG2HNRNPM
IRF9ENSG00000213928.4478.52510326.118100.553105.178004.36880HepG2HNRNPU
IRF9ENSG00000213928.4607.35920463.816700.388902.769802.04520HepG2IGF2BP1
IRF9ENSG00000213928.41229.27550304.429302.0135044.5161042.20570HepG2IGF2BP2
IRF9ENSG00000213928.4399.24460276.662300.529004.414903.13820HepG2KIF1C
IRF9ENSG00000213928.4916.99120538.735800.767206.303905.04000HepG2LARP4
IRF9ENSG00000213928.4211.28660304.15600-0.525602.470001.32920HepG2LIN28B
IRF9ENSG00000213928.4529.37610324.898200.704204.559803.76760HepG2MATR3
IRF9ENSG00000213928.4828.07940372.925401.1508017.3414015.52570HepG2MSI2
IRF9ENSG00000213928.4967.03670332.524601.5400022.4975020.80220HepG2NCBP2
IRF9ENSG00000213928.4787.17850451.637000.8014011.9794010.44050HepG2NOL12
IRF9ENSG00000213928.4549.19250260.205701.077605.975804.32800HepG2NONO
IRF9ENSG00000213928.4508.85710315.446200.689803.336602.35650HepG2PABPC1
IRF9ENSG00000213928.4519.62540296.011500.811706.528505.43070HepG2PABPC4
IRF9ENSG00000213928.4472.93940322.815600.550804.773203.69480HepG2PARN
IRF9ENSG00000213928.4678.56880282.048301.2665012.1510010.20590HepG2PCBP2
IRF9ENSG00000213928.4613.50190218.437501.4897017.7369015.94730HepG2PRPF8
IRF9ENSG00000213928.4833.23940304.812601.450707.089906.29560HepG2PTBP1
IRF9ENSG00000213928.4567.68480431.153100.396802.745902.15150HepG2PUF60
IRF9ENSG00000213928.4777.73970457.718500.7647014.4081013.27590HepG2PUM1
IRF9ENSG00000213928.4610.82770457.365200.417302.981402.28470HepG2PUM2
IRF9ENSG00000213928.4453.08750308.242200.555604.996704.21270HepG2PUS1
IRF9ENSG00000213928.4488.30720272.170500.843204.240003.37690HepG2RAVER1
IRF9ENSG00000213928.4794.68800506.991600.648307.439806.12750HepG2RBM15
IRF9ENSG00000213928.4960.46080393.161301.2885028.5665027.25050HepG2RBM22
IRF9ENSG00000213928.4600.83430299.568901.0040012.6853011.30380HepG2RBM25
IRF9ENSG00000213928.4518.97250339.200700.613405.798705.06130HepG2NELFE
IRF9ENSG00000213928.4953.05160507.367600.9094012.2809011.02310HepG2RPLP0
IRF9ENSG00000213928.4364.59270265.158000.459302.460401.87710HepG2RPS19
IRF9ENSG00000213928.4626.17380322.115800.958905.017703.95860HepG2RPS2
IRF9ENSG00000213928.4493.06400328.802400.584503.709002.45530HepG2RPS5
IRF9ENSG00000213928.4428.83480216.071200.988806.762905.59500HepG2RRP9
IRF9ENSG00000213928.4405.36830266.092600.607203.141202.13660HepG2SERBP1
IRF9ENSG00000213928.4763.16880413.963800.882407.363806.22490HepG2SF3A3
IRF9ENSG00000213928.4600.45510317.292300.9201012.8779011.74940HepG2SF3B4
IRF9ENSG00000213928.4536.34270233.501701.199603.519101.83380HepG2SFPQ
IRF9ENSG00000213928.4313.74610413.47120-0.398202.440401.77570HepG2SLBP
IRF9ENSG00000213928.4535.21660338.701300.660007.830906.83460HepG2SMN1
IRF9ENSG00000213928.4399.97730277.578700.526902.525001.61260HepG2SMNDC1
IRF9ENSG00000213928.4418.41980215.027100.960302.723501.42490HepG2SNRNP200
IRF9ENSG00000213928.4807.96990404.123700.999402.276101.57030HepG2SNRNP70
IRF9ENSG00000213928.4706.53690444.042500.670007.135406.43410HepG2SRFBP1
IRF9ENSG00000213928.4441.55780331.207700.414802.813402.33700HepG2SRSF1
IRF9ENSG00000213928.4605.34130390.797300.631203.796302.60580HepG2SRSF3
IRF9ENSG00000213928.4643.16560425.737400.595107.300306.34990HepG2SRSF5
IRF9ENSG00000213928.4745.07010462.749100.687007.131806.09760HepG2SRSF7
IRF9ENSG00000213928.4531.54390269.475100.9799014.9143013.81530HepG2SRSF9
IRF9ENSG00000213928.4609.93280385.501400.661803.250702.70550HepG2SSB
IRF9ENSG00000213928.4442.10570301.719400.551102.631701.56300HepG2STIP1
IRF9ENSG00000213928.4423.95880254.353300.737003.543902.16880HepG2SUB1
IRF9ENSG00000213928.4842.04940484.149400.7984015.3195014.04780HepG2SUCLG1
IRF9ENSG00000213928.41070.56240281.973001.9246031.9233030.09940HepG2SUPV3L1
IRF9ENSG00000213928.4546.65340357.639600.612003.349202.56000HepG2TARDBP
IRF9ENSG00000213928.4347.69970188.981000.879504.831803.56800HepG2TFIP11
IRF9ENSG00000213928.4354.69560273.538800.374702.091201.36170HepG2TIA1
IRF9ENSG00000213928.4802.84570316.928201.3409026.5087025.25630HepG2TIAL1
IRF9ENSG00000213928.4627.47260394.204400.670504.958704.13150HepG2U2AF1
IRF9ENSG00000213928.4743.76410250.241601.571406.227104.67940HepG2U2AF2
IRF9ENSG00000213928.4687.61110445.938400.624604.478603.39610HepG2UBE2L3
IRF9ENSG00000213928.4264.99880166.552600.669903.251402.42950HepG2UCHL5
IRF9ENSG00000213928.4684.22880367.125100.8981015.1527013.77060HepG2UPF1
IRF9ENSG00000213928.4399.12070258.133300.628602.543301.58390HepG2UPF2
IRF9ENSG00000213928.4609.12410377.334500.690807.859206.20060HepG2UTP18
IRF9ENSG00000213928.4446.10970354.441000.331802.055201.52360HepG2UTP3
IRF9ENSG00000213928.4416.95810277.572200.586902.766602.04180HepG2XRN2
IRF9ENSG00000213928.4687.86860403.763800.7685010.454709.56280HepG2ZNF622
IRF9ENSG00000213928.4570.29870403.993700.497303.759902.57530K562AKAP8
IRF9ENSG00000213928.4556.94290382.551400.541804.139103.33710K562AKAP8L
IRF9ENSG00000213928.4348.50960219.304700.668203.364902.73060K562AQR
IRF9ENSG00000213928.4250.21190120.082101.059006.636205.17390K562EFTUD2
IRF9ENSG00000213928.4212.86460136.447800.641503.194202.43020K562EIF2S2
IRF9ENSG00000213928.464.84760131.03520-1.014802.881101.85170K562EIF3A
IRF9ENSG00000213928.4204.77440286.03430-0.482202.273501.41820K562EIF4G2
IRF9ENSG00000213928.4106.97780155.75520-0.542002.052001.51600K562FXR1
IRF9ENSG00000213928.486.66260139.00710-0.681702.161101.54760K562G3BP2
IRF9ENSG00000213928.4224.87700135.657500.729103.533302.64070K562GPKOW
IRF9ENSG00000213928.4432.50350233.054600.891903.850302.33030K562HNRNPA2B1
IRF9ENSG00000213928.4388.64100203.895200.930503.971802.73150K562PABPN1
IRF9ENSG00000213928.4226.91300142.306700.673003.240202.18080K562PCBP2
IRF9ENSG00000213928.4416.21660242.446600.779602.892901.39790K562PPP1R8
IRF9ENSG00000213928.4219.09770145.992000.585602.368801.53860K562PSIP1
IRF9ENSG00000213928.4218.43270312.06360-0.514702.661701.86190K562PUF60
IRF9ENSG00000213928.4597.81910379.368900.656005.399504.67310K562PUS1
IRF9ENSG00000213928.4502.50740369.652000.442903.218602.58650K562RBM15
IRF9ENSG00000213928.489.11860156.77280-0.814902.898901.77600K562NELFE
IRF9ENSG00000213928.4166.68490280.19590-0.749303.519102.37800K562RPS3
IRF9ENSG00000213928.4391.19340186.489601.068704.029702.50140K562SF1
IRF9ENSG00000213928.4196.64410129.029800.607802.174201.32290K562SF3B1
IRF9ENSG00000213928.4213.09870144.449900.560902.614701.78530K562SF3B4
IRF9ENSG00000213928.4443.96570227.383900.965204.232502.48910K562SFPQ
IRF9ENSG00000213928.4503.70760214.137401.233906.443004.30100K562SNRNP200
IRF9ENSG00000213928.4134.5686083.029900.696502.522301.30330K562SSB
IRF9ENSG00000213928.497.33830161.77460-0.732903.050602.18510K562SYNCRIP
IRF9ENSG00000213928.4413.57580218.120800.922903.863901.78560K562XPO5
IRF9ENSG00000213928.4439.88080252.031300.803403.070601.38070K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for IRF9 is not available on ENCORE database.





12 RBPs can affect the splicing of IRF9 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEIRF9ENSG00000213928.4chr14+246342652463439224633822246341642463505524635171-0.300000.000020.00104excludedHepG2HNRNPK
SEIRF9ENSG00000213928.4chr14+246342652463439224633822246341642463505524635171-0.115000.000040.00702excludedHepG2SUPV3L1
A5SSIRF9ENSG00000213928.4chr14+2463135224631589246313522463153324632174246323580.125000.000710.01384longerK562AQR
RIIRF9ENSG00000213928.4chr14+2463327124634164246332712463334324633822246341640.313000.004990.05018includedHepG2SF3A3
RIIRF9ENSG00000213928.4chr14+246332712463416424633271246333432463382224634164-0.378000.002060.04319excludedK562HNRNPC
RIIRF9ENSG00000213928.4chr14+2463327124634164246332712463334324633822246341640.256000.001030.03716includedHepG2TIA1
RIIRF9ENSG00000213928.4chr14+2463327124634164246332712463334324633822246341640.304000.005040.08906includedHepG2SRSF1
RIIRF9ENSG00000213928.4chr14+2463327124634164246332712463334324633822246341640.271000.000460.00689includedHepG2QKI
RIIRF9ENSG00000213928.4chr14+2463327124634164246332712463334324633822246341640.457000.012720.09327includedHepG2TAF15
RIIRF9ENSG00000213928.4chr14+2463327124634164246332712463334324633822246341640.264000.000030.00052includedHepG2U2AF1
RIIRF9ENSG00000213928.4chr14+2463327124634164246332712463334324633822246341640.319000.000060.00081includedHepG2SF3B4
RIIRF9ENSG00000213928.4chr14+2463327124634164246332712463334324633822246341640.401000.000040.00134includedHepG2FUBP3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for IRF9 is not avaliable on ENCORE database.