CNKSR3

General Information

Gene Name       : CNKSR3
Gene ID             : ENSG00000153721.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CNKSR3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CNKSR3ENSG00000153721.180.000.090.04ENCSR000AEF
HepG2CNKSR3ENSG00000153721.1819.5325.9822.76ENCSR985KAT
K562CNKSR3ENSG00000153721.1817.4919.9418.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CNKSR3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CNKSR3 RNA is bound by 28 proteins.  







eCLIP assay for CNKSR3 is not avaliable on ENCORE database.





28 proteins are bound to CNKSR3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6154726462154726574-3'-UTR,intron-Distal,intron-Proximal5.314557.24158HepG2FUBP3
chr6154726741154726794-3'-UTR,intron-Distal3.947834.33997K562PUM2
chr6154831665154831742-5'-UTR,intron-Distal3.640047.31899HepG2DDX3X
chr6154771231154771280-5'-UTR,CDS,intron-Distal3.847073.04254K562UCHL5
chr6154754598154754671-5'-UTR,CDS,intron-Distal,intron-Proximal4.2682011.18589HepG2U2AF2
chr6154771229154771261-5'-UTR,CDS,intron-Distal4.720394.70478HepG2BCLAF1
chr6154754628154754637-5'-UTR,CDS,intron-Distal4.305353.45943HepG2BCLAF1
chr6154831511154831597-5'-UTR,intron-Distal4.0110517.71274HepG2DDX3X
chr6154771264154771342-5'-UTR,CDS,intron-Distal3.161134.96088HepG2GRWD1
chr6154831395154831488-5'-UTR,intron-Distal3.6335615.38022HepG2DDX3X
chr6154831744154831787-5'-UTR,intron-Distal3.625423.87702HepG2NCBP2
chr6154831612154831729-5'-UTR,intron-Distal3.8683911.09811HepG2NCBP2
chr6154771225154771264-5'-UTR,CDS,intron-Distal,intron-Proximal3.178043.41665HepG2GRWD1
chr6154751636154751681-CDS,intron-Distal,intron-Proximal3.287864.34695HepG2BCLAF1
chr6154751606154751636-CDS,intron-Distal,intron-Proximal3.545145.76104HepG2BCLAF1
chr6154731524154731586-CDS,intron-Distal,intron-Proximal4.068363.18234K562BUD13
chr6154831154154831216-CDS,intron-Distal3.818623.33119HepG2SRSF9
chr6154744047154744071-CDS,intron-Distal,intron-Proximal3.764124.17155HepG2BCLAF1
chr6154732017154732090-CDS,intron-Distal,intron-Proximal4.210319.68077HepG2PRPF8
chr6154743603154743669-CDS,intron-Distal,intron-Proximal4.2469219.20116HepG2PRPF8
chr6154732081154732253-CDS,intron-Distal,intron-Proximal3.418428.73356HepG2GRWD1
chr6154744086154744116-CDS,intron-Distal3.169114.26492HepG2BCLAF1
chr6154743768154743786-CDS,intron-Distal3.480333.57857HepG2BCLAF1
chr6154732213154732260-CDS,intron-Distal3.287864.34695HepG2BCLAF1
chr6154743644154743727-CDS,intron-Distal3.155035.39266HepG2GRWD1
chr6154731477154731528-CDS,intron-Distal3.692754.41267HepG2PPIG
chr6154735427154735462-CDS,intron-Distal,intron-Proximal3.969123.60441HepG2GRWD1
chr6154735503154735566-CDS,intron-Distal,intron-Proximal3.918753.44423K562BUD13
chr6154826083154826127-intron-Distal3.381214.36650HepG2SUGP2
chr6154830505154830579-intron-Distal3.096134.36012HepG2SFPQ
chr6154823930154823963-intron-Distal3.873543.29248HepG2SUGP2
chr6154811044154811247-intron-Distal4.5693610.10565HepG2QKI
chr6154731983154732043-intron-Distal,intron-Proximal3.843723.09990HepG2RBM22
chr6154825661154825719-intron-Distal3.314493.34056HepG2MATR3
chr6154804513154804571-intron-Distal3.071653.77382HepG2HNRNPM
chr6154731974154732028-intron-Distal,intron-Proximal4.201345.09028HepG2U2AF2
chr6154827208154827396-intron-Distal4.812069.53330K562PTBP1
chr6154819027154819091-intron-Distal3.034213.02891HepG2HNRNPL
chr6154794336154794461-intron-Distal3.589207.76073HepG2QKI
chr6154780078154780168-intron-Distal3.685564.32448K562PTBP1
chr6154780487154780569-intron-Distal3.258553.34990HepG2PTBP1
chr6154780082154780151-intron-Distal4.501555.04769HepG2PTBP1
chr6154749072154749170-intron-Distal,intron-Proximal3.639914.65388K562PRPF8
chr6154827343154827402-intron-Distal4.133076.90077HepG2PTBP1
chr6154823670154823717-intron-Distal4.195357.66463HepG2XPO5
chr6154812861154812930-intron-Distal4.653604.85866HepG2QKI
chr6154827614154827699-intron-Distal3.209434.82148HepG2PTBP1
chr6154830384154830437-intron-Distal4.314994.14518HepG2GTF2F1
chr6154825618154825715-intron-Distal4.159233.62366HepG2HNRNPM
chr6154827364154827487-intron-Distal3.200675.12973HepG2MATR3
chr6154827402154827484-intron-Distal4.1528310.00695HepG2PTBP1
chr6154800502154800569-intron-Distal3.006066.03060HepG2HNRNPM
chr6154830374154830436-intron-Distal3.505875.47992HepG2HNRNPUL1
chr6154831085154831148-intron-Distal3.096714.14995HepG2HNRNPUL1
chr6154813927154813997-intron-Distal3.119843.09245HepG2HNRNPM
chr6154796414154796483-intron-Distal5.077004.04631HepG2XRN2
chr6154825495154825571-intron-Distal4.272563.74583HepG2PTBP1
chr6154825409154825479-intron-Distal3.122295.35016HepG2SUGP2
chr6154829030154829135-intron-Distal4.408637.67565HepG2HNRNPM
chr6154827204154827299-intron-Distal3.349555.93274HepG2PTBP1
chr6154831130154831179-intron-Distal3.833783.26022HepG2PRPF4
chr6154829282154829362-intron-Distal4.335945.61812HepG2CSTF2
chr6154749082154749217-intron-Distal,intron-Proximal4.418094.76003K562KHSRP
chr6154827428154827477-intron-Distal4.068333.30744K562PTBP1
chr6154830876154830961-intron-Distal3.959683.06347K562NONO
chr6154825659154825763-intron-Distal3.715308.60624HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CNKSR3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CNKSR3 is not available on ENCORE database.

  • 112 RBPs can affect the levels of CNKSR3.  








The Knockdown/knockout RNA-Seq assay for CNKSR3 is not available on ENCORE database.





112 RBPs can affect the gene expression of CNKSR3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CNKSR3ENSG00000153721.13611.399701298.86370-1.0871033.7667032.21620HepG2ACO1
CNKSR3ENSG00000153721.131174.46180883.200500.411103.195602.12770HepG2ADAR
CNKSR3ENSG00000153721.13469.342901997.56700-2.0895048.4384046.63370HepG2AKAP1
CNKSR3ENSG00000153721.131329.164401652.85520-0.314402.044601.36570HepG2ASCC1
CNKSR3ENSG00000153721.13814.712701530.95610-0.910109.550707.74730HepG2CCAR1
CNKSR3ENSG00000153721.131075.578601298.55530-0.271803.248202.53850HepG2CKAP4
CNKSR3ENSG00000153721.13947.483701231.63620-0.378403.453002.22220HepG2CPSF7
CNKSR3ENSG00000153721.131048.200001319.47150-0.332003.897903.15840HepG2CELF1
CNKSR3ENSG00000153721.131269.697501913.59590-0.591805.946105.06240HepG2DDX3X
CNKSR3ENSG00000153721.13676.26810894.42410-0.403403.300901.82080HepG2DDX52
CNKSR3ENSG00000153721.13607.25820851.96140-0.488503.011702.21120HepG2DDX55
CNKSR3ENSG00000153721.131516.96810967.519500.648703.452302.36320HepG2DDX59
CNKSR3ENSG00000153721.131284.234001643.63520-0.356002.187001.63160HepG2DDX6
CNKSR3ENSG00000153721.13655.49630889.65610-0.440703.167301.98200HepG2EFTUD2
CNKSR3ENSG00000153721.131865.445601340.873100.476204.519203.49500HepG2EIF4G2
CNKSR3ENSG00000153721.13876.013601118.31630-0.352302.825902.03060HepG2FUBP3
CNKSR3ENSG00000153721.131370.887601761.82670-0.362002.605401.93440HepG2FXR1
CNKSR3ENSG00000153721.131320.40190965.673000.451302.834402.18630HepG2GPKOW
CNKSR3ENSG00000153721.13906.886301386.81700-0.612804.160202.79780HepG2GRSF1
CNKSR3ENSG00000153721.13864.602201266.62020-0.550903.603002.02520HepG2HNRNPA0
CNKSR3ENSG00000153721.131070.491701303.97260-0.284603.090302.10890HepG2HNRNPA2B1
CNKSR3ENSG00000153721.131559.035901104.551200.497108.641507.46390HepG2HNRNPF
CNKSR3ENSG00000153721.131243.403601654.74490-0.412303.560502.77390HepG2HNRNPK
CNKSR3ENSG00000153721.131444.86700921.571300.648706.173005.27290HepG2HNRNPLL
CNKSR3ENSG00000153721.13749.362801041.97850-0.475604.903903.68090HepG2HNRNPM
CNKSR3ENSG00000153721.131690.463701087.669400.636107.393006.26190HepG2IGF2BP1
CNKSR3ENSG00000153721.13713.77980907.64660-0.346702.350101.30980HepG2LARP7
CNKSR3ENSG00000153721.131124.292101772.34800-0.656606.333105.40930HepG2MATR3
CNKSR3ENSG00000153721.13628.18840906.67650-0.529402.443001.45160HepG2METAP2
CNKSR3ENSG00000153721.13929.314401222.20980-0.395303.728202.79180HepG2MSI2
CNKSR3ENSG00000153721.131283.837701814.13200-0.498804.233703.45570HepG2NCBP2
CNKSR3ENSG00000153721.131134.773501407.04030-0.310303.266002.44010HepG2NOL12
CNKSR3ENSG00000153721.131138.21490817.244000.477802.999902.22180HepG2NSUN2
CNKSR3ENSG00000153721.132397.325001615.764600.569105.876704.83740HepG2PABPC4
CNKSR3ENSG00000153721.131269.500501644.99450-0.373805.516704.70670HepG2PCBP1
CNKSR3ENSG00000153721.131768.831801362.383000.376605.560704.50380HepG2PRPF4
CNKSR3ENSG00000153721.13945.473701673.81370-0.8240012.9196011.91070HepG2PTBP1
CNKSR3ENSG00000153721.131146.249501425.67030-0.314704.982104.23360HepG2PUM1
CNKSR3ENSG00000153721.13913.845001322.97320-0.533809.828308.78790HepG2PUS1
CNKSR3ENSG00000153721.131467.139501861.27680-0.343304.193103.58950HepG2RBM22
CNKSR3ENSG00000153721.131570.743401862.81860-0.246002.743402.20380HepG2NELFE
CNKSR3ENSG00000153721.132078.233701189.844400.804504.738903.87700HepG2RPLP0
CNKSR3ENSG00000153721.131871.016401104.759800.760006.011604.64940HepG2RPS10
CNKSR3ENSG00000153721.13675.11750842.95500-0.320302.171801.62040HepG2RPS19
CNKSR3ENSG00000153721.131947.352001223.576800.670304.778802.76370HepG2RTF1
CNKSR3ENSG00000153721.132502.312501838.851100.444402.604101.94910HepG2SF3A3
CNKSR3ENSG00000153721.131429.45950912.098200.648105.138004.19880HepG2SF3B1
CNKSR3ENSG00000153721.131458.150601742.70930-0.257202.949402.34310HepG2SF3B4
CNKSR3ENSG00000153721.131527.621701287.660800.246402.690401.99620HepG2SLBP
CNKSR3ENSG00000153721.13776.449801030.29740-0.408105.813204.93550HepG2SMN1
CNKSR3ENSG00000153721.131279.399702102.25140-0.7165020.6331019.59560HepG2SRFBP1
CNKSR3ENSG00000153721.131055.253801818.98950-0.7855021.5621020.50630HepG2SRSF1
CNKSR3ENSG00000153721.131749.102901085.178600.6886016.2916014.84710HepG2SRSF7
CNKSR3ENSG00000153721.131272.882501479.82620-0.217302.256401.74750HepG2SRSF9
CNKSR3ENSG00000153721.131562.356302036.43400-0.382302.582301.34300HepG2SSRP1
CNKSR3ENSG00000153721.131284.319901508.11510-0.231702.883302.25130HepG2SUCLG1
CNKSR3ENSG00000153721.13794.170301019.71510-0.360603.133402.13840HepG2SUPT6H
CNKSR3ENSG00000153721.131692.61130848.121600.9968013.2502011.95390HepG2SUPV3L1
CNKSR3ENSG00000153721.13675.73090972.62590-0.525407.648206.78780HepG2TRIM56
CNKSR3ENSG00000153721.132223.662901291.927800.7833011.114209.83270HepG2U2AF1
CNKSR3ENSG00000153721.13810.034301630.77770-1.0095032.8876031.03630HepG2UPF1
CNKSR3ENSG00000153721.131132.336001574.45500-0.475607.982707.04950HepG2UTP3
CNKSR3ENSG00000153721.131867.574401344.468000.4740010.256009.09970HepG2ZC3H8
CNKSR3ENSG00000153721.132154.803401793.546300.264604.295103.65290HepG2ZNF622
CNKSR3ENSG00000153721.131654.971301123.630500.558504.030502.43580HepG2ZRANB2
CNKSR3ENSG00000153721.13869.02210609.797500.511003.209901.92570K562AARS
CNKSR3ENSG00000153721.13951.637201253.86220-0.397903.257001.91460K562ABCF1
CNKSR3ENSG00000153721.13501.315301036.10380-1.047404.885804.14560K562AQR
CNKSR3ENSG00000153721.131364.142601080.933100.335603.498302.45930K562ATP5C1
CNKSR3ENSG00000153721.13272.45020606.28530-1.1540013.1452011.18530K562BOP1
CNKSR3ENSG00000153721.13531.36050873.32710-0.716806.623004.37260K562BUD13
CNKSR3ENSG00000153721.13959.691701183.21660-0.302102.442001.34990K562CCDC124
CNKSR3ENSG00000153721.13752.256301103.16710-0.552404.085202.27490K562CKAP4
CNKSR3ENSG00000153721.13473.55790935.68240-0.982502.721901.67310K562CNOT7
CNKSR3ENSG00000153721.13419.58580644.66510-0.619606.022504.87010K562CPSF6
CNKSR3ENSG00000153721.13259.04430439.95600-0.764203.541901.35940K562CPSF7
CNKSR3ENSG00000153721.131395.376701701.15610-0.285902.177101.31320K562CELF1
CNKSR3ENSG00000153721.132718.666701162.781301.2252054.7596052.22620K562DDX47
CNKSR3ENSG00000153721.13463.99560602.98080-0.378002.824201.49950K562DDX6
CNKSR3ENSG00000153721.13281.23790442.57390-0.654104.534602.79030K562DNAJC21
CNKSR3ENSG00000153721.13318.07020620.37980-0.9638010.132708.27790K562EFTUD2
CNKSR3ENSG00000153721.13457.66350653.31370-0.513505.241503.55150K562EIF2S1
CNKSR3ENSG00000153721.13674.17920898.89380-0.415003.509602.71490K562EIF2S2
CNKSR3ENSG00000153721.13794.30710418.635800.923905.791504.29900K562EIF3A
CNKSR3ENSG00000153721.131015.22040664.353400.611705.120303.65790K562EIF3D
CNKSR3ENSG00000153721.13920.52210485.656400.9224011.338609.70770K562EIF3G
CNKSR3ENSG00000153721.13378.36880559.59110-0.564604.834903.24070K562EIF4B
CNKSR3ENSG00000153721.13559.28880958.21940-0.776806.344603.80560K562ESF1
CNKSR3ENSG00000153721.13596.89490901.25320-0.594505.805604.54550K562FIP1L1
CNKSR3ENSG00000153721.13312.97600655.91230-1.0675012.8522010.94290K562FMR1
CNKSR3ENSG00000153721.13266.21530555.93660-1.0623011.047809.09500K562FTO
CNKSR3ENSG00000153721.131281.32860646.190900.9875023.5079021.86160K562FXR1
CNKSR3ENSG00000153721.13359.72160760.93180-1.0809018.9550016.48150K562GLRX3
CNKSR3ENSG00000153721.13250.00830615.50450-1.2998018.0882015.98350K562GPKOW
CNKSR3ENSG00000153721.13689.607601197.98820-0.796807.275206.03760K562GRSF1
CNKSR3ENSG00000153721.13239.37310667.45700-1.4794023.7178022.04200K562HNRNPC
CNKSR3ENSG00000153721.13274.12370595.94480-1.1204013.8936011.35440K562HNRNPF
CNKSR3ENSG00000153721.13962.65130741.257700.376902.241501.40730K562HNRNPM
CNKSR3ENSG00000153721.13509.57630820.92560-0.688009.190807.57350K562HNRNPU
CNKSR3ENSG00000153721.13756.905301221.95840-0.691008.295506.93080K562HSPD1
CNKSR3ENSG00000153721.13463.51690730.31320-0.655904.861103.33820K562IGF2BP2
CNKSR3ENSG00000153721.13315.57320525.54330-0.735804.622203.37780K562KRR1
CNKSR3ENSG00000153721.131126.09580767.441100.553106.311705.02150K562MAGOH
CNKSR3ENSG00000153721.13370.52850600.79770-0.697306.607705.22610K562METAP2
CNKSR3ENSG00000153721.13579.303501475.04610-1.3484027.7749024.78430K562MSI2
CNKSR3ENSG00000153721.13453.52160800.02440-0.8189013.4815011.86410K562MTPAP
CNKSR3ENSG00000153721.13435.76220620.42920-0.509704.142802.62230K562NCBP2
CNKSR3ENSG00000153721.13733.06800888.87720-0.278002.723501.98220K562NSUN2
CNKSR3ENSG00000153721.13620.57090816.71280-0.396202.403701.62970K562PCBP3
CNKSR3ENSG00000153721.13485.05010626.47570-0.369102.381901.63970K562POLR2G
CNKSR3ENSG00000153721.13634.640201023.04880-0.688907.711406.19120K562PPIG
CNKSR3ENSG00000153721.131075.784501573.56150-0.548607.288705.70170K562PUM2
CNKSR3ENSG00000153721.13777.17420545.851900.509604.781703.47570K562RCC2
CNKSR3ENSG00000153721.131028.18240752.345500.450503.603102.33420K562NELFE
CNKSR3ENSG00000153721.131328.80310615.017501.1113015.4890013.53220K562RPS19
CNKSR3ENSG00000153721.13849.31020480.636800.821205.913104.38310K562RPS3
CNKSR3ENSG00000153721.13817.86200558.113400.551205.182603.70130K562SAFB
CNKSR3ENSG00000153721.13598.60930877.12730-0.551206.697805.47810K562SF3A3
CNKSR3ENSG00000153721.13405.49540585.33780-0.529603.151102.11100K562SF3B1
CNKSR3ENSG00000153721.13473.20790730.96990-0.627306.321105.26340K562SRSF1
CNKSR3ENSG00000153721.13967.445501317.40090-0.445404.619302.72380K562SUCLG1
CNKSR3ENSG00000153721.131380.93660628.331201.1360026.4199024.09990K562SYNCRIP
CNKSR3ENSG00000153721.13530.30920739.76770-0.480203.559202.75300K562TARDBP
CNKSR3ENSG00000153721.13781.487401054.48010-0.432203.496801.90280K562TRIP6
CNKSR3ENSG00000153721.13701.540101110.23870-0.6623011.392608.82920K562TROVE2
CNKSR3ENSG00000153721.13703.69940550.148700.355002.609701.82930K562U2AF2
CNKSR3ENSG00000153721.13225.44610618.71500-1.4565017.2415014.71680K562UCHL5
CNKSR3ENSG00000153721.13686.42280942.49710-0.457405.789604.79440K562UPF1
CNKSR3ENSG00000153721.131083.24880786.838100.461104.675002.50360K562UPF2
CNKSR3ENSG00000153721.13676.162301035.88830-0.615402.961901.60950K562UTP18
CNKSR3ENSG00000153721.13583.68460806.46220-0.466404.120703.04500K562WDR3
CNKSR3ENSG00000153721.131381.81730838.646400.7203017.4785015.61630K562WDR43
CNKSR3ENSG00000153721.13686.572801227.09290-0.837803.883602.34430K562WRN
CNKSR3ENSG00000153721.13716.243501167.45100-0.704802.857701.97840K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CNKSR3 is not available on ENCORE database.





5 RBPs can affect the splicing of CNKSR3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECNKSR3ENSG00000153721.13chr6-1547357141547358991547354321547355571547436391547437860.109000.000000.00000includedHepG2CDC40
SECNKSR3ENSG00000153721.13chr6-1547318501547319741547314761547315661547320671547322760.073000.000770.03813includedHepG2SF3B4
A3SSCNKSR3ENSG00000153721.13chr6-1547624251547625701547624251547625131547632211547634240.153000.000160.00135longerK562AQR
A3SSCNKSR3ENSG00000153721.13chr6-1547440481547441921547440481547441171547492611547493210.126000.010500.05511longerK562AQR
MXECNKSR3ENSG00000153721.13chr6-154754599154754641154762425154762513154751605154751725154763221154763424-0.188000.000340.029222includedHepG2IGF2BP3
MXECNKSR3ENSG00000153721.13chr6-1547545991547546411547624251547625131547516051547517251547632211547634240.235000.000330.050821includedHepG2SMNDC1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CNKSR3 is not avaliable on ENCORE database.