CLDN6

General Information

Gene Name       : CLDN6
Gene ID             : ENSG00000184697.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CLDN6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLDN6ENSG00000184697.60.000.000.00ENCSR000AEF
HepG2CLDN6ENSG00000184697.65.723.884.80ENCSR985KAT
K562CLDN6ENSG00000184697.60.600.300.45ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CLDN6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CLDN6 RNA is bound by 2 proteins.  







eCLIP assay for CLDN6 is not avaliable on ENCORE database.





2 proteins are bound to CLDN6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1630648143064892-3'-UTR,intron-Distal,intron-Proximal5.150417.06641HepG2PCBP2
chr1630647343064800-3'-UTR,intron-Distal,intron-Proximal4.6644910.47447HepG2PCBP2
chr1630654783065503-CDS,intron-Distal5.838776.13895HepG2SND1
chr1630657503065805-CDS,intron-Distal5.037144.65414HepG2SND1
chr1630654233065478-CDS,intron-Distal6.4072311.52157HepG2SND1
chr1630655233065576-CDS,intron-Distal5.458175.84094HepG2SND1
chr1630655763065643-CDS,intron-Distal5.7902810.92525HepG2SND1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CLDN6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLDN6 is not available on ENCORE database.

  • 106 RBPs can affect the levels of CLDN6.  








The Knockdown/knockout RNA-Seq assay for CLDN6 is not available on ENCORE database.





106 RBPs can affect the gene expression of CLDN6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLDN6ENSG00000184697.6759.52140222.095801.7738049.3606047.58480HepG2ACO1
CLDN6ENSG00000184697.6267.4907089.043301.586804.737604.06540HepG2AKAP1
CLDN6ENSG00000184697.6589.49110204.118801.5300019.0499016.63140HepG2AKAP8
CLDN6ENSG00000184697.6562.00290223.141701.3325023.5391021.63210HepG2AKAP8L
CLDN6ENSG00000184697.6157.0569073.670301.092004.768603.74950HepG2ASCC1
CLDN6ENSG00000184697.6648.66040326.723000.9893016.3082014.89200HepG2AUH
CLDN6ENSG00000184697.6267.64750151.799600.818103.205202.19650HepG2BCCIP
CLDN6ENSG00000184697.676.45840131.87400-0.786402.885101.96530HepG2BCLAF1
CLDN6ENSG00000184697.6142.95250408.02410-1.513105.150004.36470HepG2BOP1
CLDN6ENSG00000184697.6181.70530301.24580-0.729303.530702.41620HepG2CCAR1
CLDN6ENSG00000184697.6123.8740069.993600.823502.573201.82490HepG2CIRBP
CLDN6ENSG00000184697.6113.25740176.88290-0.643201.945401.30910HepG2CNOT7
CLDN6ENSG00000184697.6100.15170166.82430-0.736103.277502.16820HepG2YBX3
CLDN6ENSG00000184697.6207.45200125.105600.729502.884801.49090HepG2CSTF2T
CLDN6ENSG00000184697.6177.70350246.63900-0.472902.471801.76570HepG2DAZAP1
CLDN6ENSG00000184697.6310.80800205.408200.597404.639203.59650HepG2DDX19B
CLDN6ENSG00000184697.6193.70380134.861900.522301.926601.34830HepG2DDX21
CLDN6ENSG00000184697.657.44940113.02090-0.976203.202001.70040HepG2DDX28
CLDN6ENSG00000184697.6186.6595085.284701.129905.469704.61640HepG2DDX3X
CLDN6ENSG00000184697.6129.78880223.12380-0.781704.056002.50190HepG2DDX47
CLDN6ENSG00000184697.6186.82850121.177200.624502.633601.31100HepG2DDX52
CLDN6ENSG00000184697.6324.78880149.265101.121506.254705.14760HepG2DDX55
CLDN6ENSG00000184697.6545.0575073.289602.8946045.3460043.28960HepG2DDX6
CLDN6ENSG00000184697.6287.08150163.813500.809306.015705.01110HepG2DNAJC21
CLDN6ENSG00000184697.6240.31240144.574700.733003.174002.19150HepG2EEF2
CLDN6ENSG00000184697.6225.3461070.427001.6778011.8267010.65400HepG2EIF2S1
CLDN6ENSG00000184697.6150.6962077.816600.953403.696602.96120HepG2EIF4A3
CLDN6ENSG00000184697.6126.8572075.791300.743001.937201.35490HepG2EIF4B
CLDN6ENSG00000184697.6168.61030243.32680-0.529202.611801.79530HepG2EIF4G1
CLDN6ENSG00000184697.6127.27690233.09110-0.872904.815303.75850HepG2EIF4G2
CLDN6ENSG00000184697.6513.90280217.029901.2435016.2841014.37110HepG2EWSR1
CLDN6ENSG00000184697.675.59180154.47450-1.031103.916301.50260HepG2FASTKD1
CLDN6ENSG00000184697.6611.27120302.139601.016509.113107.81950HepG2FIP1L1
CLDN6ENSG00000184697.6551.56710230.747401.2571013.279809.94250HepG2FMR1
CLDN6ENSG00000184697.6164.03880375.20410-1.193602.854501.82310HepG2FTO
CLDN6ENSG00000184697.629.7004062.19890-1.066402.409901.67540HepG2FUBP3
CLDN6ENSG00000184697.6291.4571078.554801.8914017.3026015.73790HepG2FXR1
CLDN6ENSG00000184697.6633.1210072.849403.1194059.9238057.05940HepG2G3BP1
CLDN6ENSG00000184697.6185.55860104.492900.828403.729502.67550HepG2GEMIN5
CLDN6ENSG00000184697.61132.00260424.719601.4142020.8501019.26870HepG2GPKOW
CLDN6ENSG00000184697.6328.53660212.039700.631604.959103.68970HepG2HDGF
CLDN6ENSG00000184697.6320.93030165.382900.956406.692505.75380HepG2HNRNPA1
CLDN6ENSG00000184697.684.23970146.19880-0.795402.879401.44950HepG2HNRNPAB
CLDN6ENSG00000184697.6274.59850636.93940-1.2138021.8626020.11360HepG2HNRNPF
CLDN6ENSG00000184697.6153.6502073.817101.057504.363303.50280HepG2HNRNPK
CLDN6ENSG00000184697.6614.00090405.311700.599103.265302.58820HepG2HNRNPLL
CLDN6ENSG00000184697.6599.65760208.516001.5239024.9422022.64560HepG2HNRNPM
CLDN6ENSG00000184697.673.04630182.73960-1.322909.419808.35260HepG2HNRNPU
CLDN6ENSG00000184697.6449.59970222.228301.016507.539905.56150HepG2HSPD1
CLDN6ENSG00000184697.6259.77740627.20800-1.2717019.7334017.99480HepG2IGF2BP1
CLDN6ENSG00000184697.6245.6973069.516401.821403.688202.55180HepG2IGF2BP3
CLDN6ENSG00000184697.6157.3773074.488201.079002.651101.67310HepG2KHSRP
CLDN6ENSG00000184697.6117.70420222.06510-0.915804.231002.67540HepG2KRR1
CLDN6ENSG00000184697.6544.27510317.963800.775405.297304.13580HepG2LARP4
CLDN6ENSG00000184697.6205.62800128.677300.676202.706601.58540HepG2LARP7
CLDN6ENSG00000184697.6183.69650108.909200.754103.131701.41080HepG2MARK2
CLDN6ENSG00000184697.6646.1912079.015503.0317052.3140049.90400HepG2MATR3
CLDN6ENSG00000184697.6238.21320122.825700.955503.561202.37250HepG2METAP2
CLDN6ENSG00000184697.6167.3096080.871301.048704.554003.75170HepG2NCBP2
CLDN6ENSG00000184697.6272.50870137.137600.990603.756502.46670HepG2NONO
CLDN6ENSG00000184697.644.3643082.08020-0.887602.413101.83710HepG2PCBP1
CLDN6ENSG00000184697.654.32390158.66020-1.546307.819805.37980HepG2PNPT1
CLDN6ENSG00000184697.6426.05440115.067701.8885020.0958018.21440HepG2PRPF8
CLDN6ENSG00000184697.6216.1379083.529801.3715010.448909.51750HepG2PTBP1
CLDN6ENSG00000184697.6384.53200233.461200.719805.252504.46410HepG2PUF60
CLDN6ENSG00000184697.6398.35230247.648700.685703.592802.83350HepG2PUM2
CLDN6ENSG00000184697.6141.98840226.21940-0.671903.997603.28230HepG2PUS1
CLDN6ENSG00000184697.63236.91130313.503803.3680050.6229048.94700HepG2RBM22
CLDN6ENSG00000184697.686.23190170.89090-0.986804.229302.35070HepG2RBM47
CLDN6ENSG00000184697.6704.4461092.952302.9218077.8294075.95440HepG2NELFE
CLDN6ENSG00000184697.6204.0803086.587701.236808.427907.44020HepG2RECQL
CLDN6ENSG00000184697.6482.59660686.07170-0.507503.817103.03510HepG2RPLP0
CLDN6ENSG00000184697.623.13120137.13860-2.567704.444103.25330HepG2RPS10
CLDN6ENSG00000184697.6271.96980114.199301.251809.834908.76290HepG2RPS19
CLDN6ENSG00000184697.6293.44110143.096201.036006.369205.18580HepG2RPS2
CLDN6ENSG00000184697.6366.67290146.084101.3276011.224309.09290HepG2RPS5
CLDN6ENSG00000184697.669.03750113.81810-0.721302.152701.45110HepG2RRP9
CLDN6ENSG00000184697.670.45800162.73900-1.207707.250306.27790HepG2SAFB2
CLDN6ENSG00000184697.665.82710167.39850-1.346506.511404.53190HepG2SART3
CLDN6ENSG00000184697.693.67000168.78770-0.849603.097801.45260HepG2SBDS
CLDN6ENSG00000184697.6189.16260114.611900.722803.035102.04830HepG2SERBP1
CLDN6ENSG00000184697.6561.29250192.467601.544004.721503.82580HepG2SF3A3
CLDN6ENSG00000184697.678.39300401.21710-2.355608.354007.18970HepG2SF3B1
CLDN6ENSG00000184697.6185.1292086.947201.090206.354805.52000HepG2SF3B4
CLDN6ENSG00000184697.6160.78520223.85460-0.477402.209801.57140HepG2SLBP
CLDN6ENSG00000184697.6565.49410189.783401.5751033.0019031.19620HepG2SMN1
CLDN6ENSG00000184697.61143.13350446.410601.356503.925102.98700HepG2SNRNP70
CLDN6ENSG00000184697.6311.6158090.761401.7795014.1670013.27500HepG2SRSF1
CLDN6ENSG00000184697.6392.90940230.510000.769304.615003.84240HepG2SRSF5
CLDN6ENSG00000184697.6338.65490625.75620-0.8858012.8065011.49730HepG2SRSF7
CLDN6ENSG00000184697.6407.8760073.845602.4654048.4968046.75550HepG2SRSF9
CLDN6ENSG00000184697.685.62670307.47870-1.8444013.6103012.64640HepG2SSB
CLDN6ENSG00000184697.6435.58290262.152500.732407.445106.50480HepG2SUCLG1
CLDN6ENSG00000184697.6920.75220148.568402.6316047.5776045.46950HepG2SUPV3L1
CLDN6ENSG00000184697.6158.7017081.600500.959603.312402.70760HepG2TAF15
CLDN6ENSG00000184697.6207.2101099.566401.057304.889003.61970HepG2TFIP11
CLDN6ENSG00000184697.6286.76350177.573900.691303.128902.60260HepG2TIAL1
CLDN6ENSG00000184697.6559.77480228.083101.2952016.6393014.32260HepG2TUFM
CLDN6ENSG00000184697.6990.03610226.953102.1250010.762208.71410HepG2U2AF2
CLDN6ENSG00000184697.6331.64100170.688700.958209.571108.40690HepG2UPF1
CLDN6ENSG00000184697.6256.51490135.983400.915503.527302.38440HepG2UPF2
CLDN6ENSG00000184697.690.85870159.23890-0.809503.090901.92570HepG2XPO5
CLDN6ENSG00000184697.6408.45040153.424201.4125012.3072010.24910HepG2XRCC6
CLDN6ENSG00000184697.6244.46520146.250000.741102.725202.00570HepG2XRN2
CLDN6ENSG00000184697.6294.26830151.918600.953708.375107.31200HepG2ZC3H8
CLDN6ENSG00000184697.66.5667024.91490-1.923802.543101.64050K562SRPK2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLDN6 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CLDN6 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CLDN6 is not avaliable on ENCORE database.