CALM1

General Information

Gene Name       : CALM1
Gene ID             : ENSG00000198668.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CALM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CALM1ENSG00000198668.10309.76285.99297.88ENCSR000AEF
HepG2CALM1ENSG00000198668.10194.89276.51235.70ENCSR985KAT
K562CALM1ENSG00000198668.10148.58180.64164.61ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CALM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CALM1 RNA is bound by 26 proteins.  







eCLIP assay for CALM1 is not avaliable on ENCORE database.





26 proteins are bound to CALM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr149087130290871421+3'-UTR5.5734469.91575K562UPF1
chr149087081790870851+3'-UTR,CDS3.976823.17744HepG2GRWD1
chr149087130690871419+3'-UTR4.6833413.05553HepG2UPF1
chr149086766290867716+3'-UTR,5'-UTR,CDS3.146808.17760K562UCHL5
chr149087105990871161+3'-UTR4.4109519.98514HepG2BCLAF1
chr149087130190871420+3'-UTR3.7250410.62109K562FAM120A
chr149087106890871088+3'-UTR3.008913.10272HepG2GRWD1
chr149087252090872557+3'-UTR3.603113.77931K562UPF1
chr149086765790867701+3'-UTR,5'-UTR,CDS3.812766.81726HepG2GRWD1
chr149087158290871646+3'-UTR3.960736.04184HepG2SUB1
chr149087119790871274+3'-UTR4.362174.24775K562IGF2BP2
chr149087178590871854+3'-UTR3.188394.37904K562IGF2BP2
chr149087079990870858+3'-UTR,CDS3.214558.39218K562UCHL5
chr149087167190871735+3'-UTR5.840999.00408HepG2SUB1
chr149087150490871612+3'-UTR3.247586.53344K562FAM120A
chr149087152990871653+3'-UTR3.469015.22257HepG2UPF1
chr149087116790871299+3'-UTR4.9646416.85479K562IGF2BP1
chr149087187190871893+3'-UTR3.120623.87559K562YBX3
chr149087103290871060+3'-UTR,CDS,intron-Proximal3.675817.52358K562UCHL5
chr149087122090871270+3'-UTR3.6692411.02630K562PABPC4
chr149087103290871059+3'-UTR,CDS,intron-Proximal3.477445.45876HepG2BCLAF1
chr149087143190871474+3'-UTR5.728889.60749K562UPF1
chr149087177290871846+3'-UTR3.7373014.35038K562UPF1
chr149087422490874341+3'-UTR5.002646.77594K562FAM120A
chr149087111290871133+3'-UTR4.043693.89395K562GRWD1
chr149087147890871615+3'-UTR4.8358430.13891K562UPF1
chr149087108890871155+3'-UTR3.573325.23533HepG2GRWD1
chr149087107090871160+3'-UTR3.128805.69310HepG2HLTF
chr149086760090867732+3'-UTR,5'-UTR,CDS,intron-Proximal3.929513.02618HepG2UCHL5
chr149086347590863552+5'-UTR,intron-Distal,intron-Proximal4.252648.43072HepG2DDX3X
chr149086640290866475+5'-UTR,CDS,intron-Proximal4.370318.78209HepG2PRPF8
chr149086340890863461+5'-UTR,intron-Distal4.876286.85036HepG2RPS3
chr149086635790866470+5'-UTR,CDS,intron-Proximal4.583524.92499HepG2AQR
chr149086352490863582+5'-UTR,CDS,intron-Distal,intron-Proximal4.800703.96093HepG2EIF3D
chr149086337290863497+5'-UTR,intron-Distal4.8376711.98386HepG2GRWD1
chr149086458090864653+5'-UTR,intron-Distal4.651935.68315HepG2PRPF4
chr149086458390864676+5'-UTR,intron-Distal3.381153.62838HepG2FAM120A
chr149086456490864652+5'-UTR,intron-Distal3.756375.85439HepG2CSTF2T
chr149086347190863546+5'-UTR,intron-Distal,intron-Proximal3.480744.84203K562DDX3X
chr149086337990863471+5'-UTR,intron-Distal5.0869622.23931K562DDX3X
chr149086459590864643+5'-UTR,intron-Distal4.103993.84029K562DROSHA
chr149087020490870257+CDS,intron-Distal,intron-Proximal3.212063.68457K562LIN28B
chr149087021690870280+CDS,intron-Distal3.083203.17233HepG2BCLAF1
chr149086424590864315+intron-Distal4.118246.45532K562GEMIN5
chr149086424490864309+intron-Distal3.571573.77732HepG2DGCR8
chr149086426590864357+intron-Distal4.889018.65034K562DROSHA
chr149086426390864337+intron-Distal3.674923.89592K562XRCC6
chr149086425590864337+intron-Distal4.846537.46616K562CSTF2T
chr149086424490864346+intron-Distal4.1107414.56910HepG2NKRF
chr149086424590864333+intron-Distal4.881905.54349HepG2GTF2F1
chr149086424390864339+intron-Distal3.6885110.80964HepG2PRPF4
chr149086369590863781+intron-Distal3.236704.76426K562PRPF8
chr149086424890864333+intron-Distal3.863887.37512HepG2EFTUD2
chr149086426290864364+intron-Distal4.535149.21545K562GTF2F1
chr149086424990864322+intron-Distal3.741119.03257HepG2FAM120A
chr149086778890867853+intron-Distal,intron-Proximal3.384433.20886K562PRPF8
chr149086447290864514+intron-Distal4.094443.85108HepG2GTF2F1
chr149086424690864317+intron-Distal5.2976010.23793HepG2CSTF2T
chr149086447190864514+intron-Distal4.775875.74291HepG2FAM120A
chr149086774690867801+intron-Proximal4.916115.69951K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CALM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CALM1 is not available on ENCORE database.

  • 96 RBPs can affect the levels of CALM1.  








The Knockdown/knockout RNA-Seq assay for CALM1 is not available on ENCORE database.





96 RBPs can affect the gene expression of CALM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CALM1ENSG00000198668.61851.584202398.28920-0.373202.725201.78910HepG2ABCF1
CALM1ENSG00000198668.63111.170001996.133000.6401021.0274019.70070HepG2ACO1
CALM1ENSG00000198668.64161.138102086.271400.9960014.9969013.85900HepG2AKAP1
CALM1ENSG00000198668.61790.709001315.571400.444703.473202.31350HepG2AKAP8
CALM1ENSG00000198668.61381.018802005.54070-0.5383011.056709.65650HepG2AKAP8L
CALM1ENSG00000198668.62272.582601726.179500.396703.212002.36570HepG2ASCC1
CALM1ENSG00000198668.63806.497802998.974500.343906.260705.29460HepG2AUH
CALM1ENSG00000198668.6976.913602171.73220-1.1525014.4386013.22240HepG2BOP1
CALM1ENSG00000198668.62331.937001640.000600.507705.161004.12320HepG2CIRBP
CALM1ENSG00000198668.61633.863701995.73440-0.288604.548903.73650HepG2CKAP4
CALM1ENSG00000198668.61231.285501993.82550-0.695405.523004.58210HepG2CPSF6
CALM1ENSG00000198668.63983.461803152.286800.337505.353204.51150HepG2CELF1
CALM1ENSG00000198668.62425.531703389.81480-0.4829015.2038013.70710HepG2DAZAP1
CALM1ENSG00000198668.61285.092301846.15320-0.5227012.0481010.55880HepG2DDX19B
CALM1ENSG00000198668.61634.910202214.15390-0.437502.982801.64750HepG2DDX27
CALM1ENSG00000198668.63555.613301998.415200.8311012.2739011.04530HepG2DDX3X
CALM1ENSG00000198668.61487.299502101.50980-0.498703.430502.31450HepG2DDX5
CALM1ENSG00000198668.62124.314501716.856600.307101.856401.34010HepG2DDX6
CALM1ENSG00000198668.61480.993802046.32190-0.466503.462702.37150HepG2DHX30
CALM1ENSG00000198668.61539.905802102.70930-0.449406.795105.83670HepG2DNAJC2
CALM1ENSG00000198668.6937.886201819.39940-0.9560019.8956017.24760HepG2EIF2S2
CALM1ENSG00000198668.62765.812403343.97380-0.273902.773401.93560HepG2EIF4G1
CALM1ENSG00000198668.62131.285503203.36440-0.587908.127906.76490HepG2EIF4G2
CALM1ENSG00000198668.62418.603503443.13890-0.5096011.8221010.72060HepG2ETF1
CALM1ENSG00000198668.6759.408701040.20400-0.453904.099103.15120HepG2FUBP3
CALM1ENSG00000198668.62230.694401706.978300.385902.856102.18080HepG2G3BP1
CALM1ENSG00000198668.61582.638301189.675100.411703.170902.20360HepG2GEMIN5
CALM1ENSG00000198668.61053.413302260.31270-1.1015012.4393011.17170HepG2GPKOW
CALM1ENSG00000198668.61549.165001905.75690-0.298903.995802.83550HepG2HDGF
CALM1ENSG00000198668.61287.728802142.02850-0.734109.426308.33780HepG2HNRNPA1
CALM1ENSG00000198668.61022.136102382.52430-1.2209029.1297027.17210HepG2HNRNPC
CALM1ENSG00000198668.61565.550602469.54590-0.6576018.0330016.40630HepG2HNRNPF
CALM1ENSG00000198668.62618.185003087.96280-0.238103.955803.16020HepG2HNRNPL
CALM1ENSG00000198668.61446.092602157.04390-0.576904.963604.14610HepG2HNRNPLL
CALM1ENSG00000198668.61579.319902431.78150-0.6227011.4496010.07380HepG2IGF2BP1
CALM1ENSG00000198668.62018.906102417.60110-0.260002.170501.51200HepG2ILF2
CALM1ENSG00000198668.61483.501801824.73770-0.298704.706503.38400HepG2KIF1C
CALM1ENSG00000198668.62384.189901810.782800.396803.777402.45120HepG2LARP7
CALM1ENSG00000198668.63189.073001851.167700.784609.801008.66990HepG2MATR3
CALM1ENSG00000198668.62494.650601960.092500.347803.704402.77110HepG2MSI2
CALM1ENSG00000198668.61295.558902199.56310-0.763606.079704.61540HepG2MTPAP
CALM1ENSG00000198668.61164.168201645.87080-0.499605.560703.84960HepG2NAA15
CALM1ENSG00000198668.62586.897001894.739100.449103.824603.08540HepG2NCBP2
CALM1ENSG00000198668.62537.721103361.31560-0.405506.073704.94490HepG2NOL12
CALM1ENSG00000198668.61183.866801912.51860-0.692005.821104.75960HepG2NSUN2
CALM1ENSG00000198668.61747.173202342.81400-0.423205.757104.59760HepG2PARN
CALM1ENSG00000198668.61285.433902110.99270-0.7157012.1729010.69440HepG2PPIL4
CALM1ENSG00000198668.61139.866501491.50670-0.387905.423804.37530HepG2PRPF4
CALM1ENSG00000198668.62715.709601892.476300.5210012.2737011.28430HepG2PTBP1
CALM1ENSG00000198668.63096.534603405.93850-0.137402.008401.48690HepG2PUM1
CALM1ENSG00000198668.62483.814502877.84470-0.212402.166001.69260HepG2RBM22
CALM1ENSG00000198668.61114.585302202.39090-0.982603.196201.44440HepG2RBM39
CALM1ENSG00000198668.62992.684602106.106900.5068011.5789010.61860HepG2NELFE
CALM1ENSG00000198668.61318.691202660.54890-1.0126022.6447021.07820HepG2RPLP0
CALM1ENSG00000198668.61008.930501300.17310-0.365903.231802.57410HepG2RPS19
CALM1ENSG00000198668.61342.588002055.66650-0.614607.615405.85300HepG2RPS5
CALM1ENSG00000198668.61075.574502107.77220-0.9706020.6690019.13620HepG2SAFB2
CALM1ENSG00000198668.61480.265702135.13750-0.528504.449803.57340HepG2SF3B1
CALM1ENSG00000198668.61885.568603076.30350-0.7062028.0612026.28520HepG2SLBP
CALM1ENSG00000198668.61487.399802034.04960-0.451602.871801.89600HepG2SMNDC1
CALM1ENSG00000198668.61376.786601941.38220-0.495803.459401.66110HepG2SND1
CALM1ENSG00000198668.63094.779502056.527700.5895017.1061016.14340HepG2SRSF1
CALM1ENSG00000198668.61837.891702426.30340-0.400707.591506.53200HepG2SRSF7
CALM1ENSG00000198668.61177.652701617.64940-0.458003.270401.92920HepG2STAU1
CALM1ENSG00000198668.62986.478003602.85570-0.270705.435604.61720HepG2SUCLG1
CALM1ENSG00000198668.61247.983001635.35620-0.390003.677302.60450HepG2SUPT6H
CALM1ENSG00000198668.61537.558901848.57900-0.265802.634702.08640HepG2TAF15
CALM1ENSG00000198668.61397.145002102.03590-0.589305.781104.78820HepG2TARDBP
CALM1ENSG00000198668.61346.597701698.49500-0.334903.287502.38110HepG2TIA1
CALM1ENSG00000198668.6919.639802300.09200-1.3226025.1372023.91530HepG2TIAL1
CALM1ENSG00000198668.61474.758002320.30520-0.6538011.5771010.54080HepG2TRIM56
CALM1ENSG00000198668.62657.575202071.687600.359202.978302.32740HepG2U2AF1
CALM1ENSG00000198668.62197.136601807.990800.281103.746803.06630HepG2UTP3
CALM1ENSG00000198668.61557.530802318.96900-0.574206.367405.28260HepG2XRN2
CALM1ENSG00000198668.6636.076101471.95870-1.2105045.2428043.20600HepG2ZC3H8
CALM1ENSG00000198668.61834.920402059.57940-0.166601.961801.47960HepG2ZNF622
CALM1ENSG00000198668.61548.786701220.512800.343604.297503.61710K562AGGF1
CALM1ENSG00000198668.61600.912702295.40770-0.519902.792902.20240K562AQR
CALM1ENSG00000198668.61082.168301311.02250-0.276802.924001.93870K562BCLAF1
CALM1ENSG00000198668.6895.264301294.26570-0.531704.944103.76380K562BOP1
CALM1ENSG00000198668.63007.291703571.58310-0.248102.241401.36320K562CELF1
CALM1ENSG00000198668.61678.499702026.41860-0.271803.243402.54630K562DDX47
CALM1ENSG00000198668.61644.902001366.689700.267202.615201.76770K562DKC1
CALM1ENSG00000198668.6772.219701133.42910-0.553604.693703.48970K562EFTUD2
CALM1ENSG00000198668.6861.812601106.33880-0.360302.794901.96920K562EIF4A3
CALM1ENSG00000198668.61583.818301104.515600.519903.669202.82970K562G3BP2
CALM1ENSG00000198668.6950.383101313.90690-0.467304.562903.54640K562GPKOW
CALM1ENSG00000198668.6565.481301230.26280-1.1214021.3376019.75750K562HNRNPC
CALM1ENSG00000198668.6858.191101098.49850-0.356202.718901.58740K562HNRNPF
CALM1ENSG00000198668.61413.377701832.00060-0.374304.657603.49120K562HNRNPU
CALM1ENSG00000198668.61858.834201509.895600.299802.467601.61710K562MBNL1
CALM1ENSG00000198668.6993.664101282.52020-0.368203.120602.18730K562METAP2
CALM1ENSG00000198668.61402.497301645.33670-0.230403.011302.23670K562NSUN2
CALM1ENSG00000198668.62046.391901259.585300.700009.523408.56500K562PUS1
CALM1ENSG00000198668.61707.057401227.184800.476106.634505.74160K562RBM15
CALM1ENSG00000198668.6695.890501006.19520-0.532005.632804.21030K562RCC2
CALM1ENSG00000198668.6931.702101149.05080-0.302502.513301.69990K562SF3B4
CALM1ENSG00000198668.61252.150501894.86470-0.597703.313801.38480K562SMN1
CALM1ENSG00000198668.6589.35300953.86390-0.694707.501405.57920K562SRFBP1
CALM1ENSG00000198668.6716.058001068.11000-0.576904.579603.24740K562SUPV3L1
CALM1ENSG00000198668.61193.13320988.811100.270902.159301.43320K562SYNCRIP
CALM1ENSG00000198668.6988.535401341.44430-0.440403.755002.92580K562TARDBP
CALM1ENSG00000198668.61037.764701293.96820-0.318302.629401.83220K562TIA1
CALM1ENSG00000198668.6784.111301126.92610-0.523304.869603.53040K562TRIM56
CALM1ENSG00000198668.61534.091501794.52760-0.226202.598901.37300K562TROVE2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CALM1 is not available on ENCORE database.





4 RBPs can affect the splicing of CALM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECALM1ENSG00000198668.6chr14+908653349086543190863372908635779086640890866439-0.067000.003690.05948excludedK562SRSF1
SECALM1ENSG00000198668.6chr14+9086533490865431908633729086357790866408908664390.132000.003430.05538includedK562SF3B4
SECALM1ENSG00000198668.6chr14+908653349086543190863372908635779086640890866439-0.058000.012040.09413excludedK562AQR
SECALM1ENSG00000198668.6chr14+908653349086543190863372908635779086640890866439-0.058000.000620.01912excludedK562AGGF1
A5SSCALM1ENSG00000198668.6chr14+9086533490865506908653349086543190866408908664390.703000.004930.07158longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CALM1 is not avaliable on ENCORE database.