BRPF3

General Information

Gene Name       : BRPF3
Gene ID             : ENSG00000096070.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: BRPF3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878BRPF3ENSG00000096070.196.9510.958.95ENCSR000AEF
HepG2BRPF3ENSG00000096070.1924.6826.7725.73ENCSR985KAT
K562BRPF3ENSG00000096070.1912.9213.0012.96ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for BRPF3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • BRPF3 RNA is bound by 22 proteins.  







eCLIP assay for BRPF3 is not avaliable on ENCORE database.





22 proteins are bound to BRPF3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63619938736199488+3'-UTR3.640115.64799K562IGF2BP2
chr63620024236200288+3'-UTR3.840596.10762HepG2PTBP1
chr63618572836185833+3'-UTR,CDS,intron-Distal,intron-Proximal3.767907.29769HepG2PRPF8
chr63619930336199381+3'-UTR5.369026.46614K562PCBP1
chr63619888436198978+3'-UTR4.2583212.30819HepG2PTBP1
chr63619931936199376+3'-UTR4.323368.47057HepG2PCBP2
chr63619996336200019+3'-UTR4.6246516.08546K562PUM2
chr63620018836200242+3'-UTR3.085365.07140HepG2PTBP1
chr63619933336199417+3'-UTR3.617717.88104K562PTBP1
chr63619937936199430+3'-UTR3.652053.30286HepG2PTBP1
chr63620029536200362+3'-UTR3.192575.14041K562TIA1
chr63620018336200272+3'-UTR4.4218115.23652K562PTBP1
chr63619951036199592+3'-UTR4.6026717.98347HepG2PCBP2
chr63619951836199570+3'-UTR4.723355.07733HepG2PTBP1
chr63620023236200295+3'-UTR3.518314.00685K562TIA1
chr63619899336199047+3'-UTR3.365515.29274K562PTBP1
chr63619891336198979+3'-UTR3.848937.62589K562PTBP1
chr63620050336200546+3'-UTR5.648159.39648K562PABPC4
chr63616463636164718+5'-UTR3.750027.94128HepG2DDX3X
chr63617910836179184+5'-UTR,CDS,intron-Distal4.153734.69071HepG2GRWD1
chr63616454936164634+5'-UTR3.583464.77429HepG2NCBP2
chr63616454036164636+5'-UTR3.230327.31899HepG2DDX3X
chr63617898236179074+5'-UTR,CDS,intron-Distal,intron-Proximal4.732516.03362HepG2AQR
chr63617814136178258+5'-UTR,CDS4.6355910.90980K562FXR2
chr63617895236179039+5'-UTR,CDS,intron-Distal,intron-Proximal4.142103.15006K562RBM15
chr63616933636169405+CDS4.531094.86986HepG2FXR2
chr63616833736168381+CDS3.337623.27569HepG2BCLAF1
chr63616902836169126+CDS4.530335.60746K562YBX3
chr63616827236168420+CDS3.498053.81856K562IGF2BP1
chr63616810036168172+CDS3.792645.37099K562FXR2
chr63617243236172474+CDS,intron-Proximal3.498593.27569HepG2BCLAF1
chr63616946536169547+CDS4.8100511.09109HepG2BCLAF1
chr63616952236169630+CDS,intron-Proximal6.0740111.80896HepG2PRPF8
chr63616852736168583+CDS3.026883.71797HepG2BCLAF1
chr63619003336190104+CDS,intron-Distal,intron-Proximal3.730265.73990HepG2PRPF8
chr63616944936169509+CDS3.620823.95937K562UCHL5
chr63616936836169422+CDS4.454266.41037HepG2BUD13
chr63616878036168833+CDS4.030336.21348K562YBX3
chr63616865036168723+CDS3.153734.02291HepG2GRWD1
chr63616933536169403+CDS4.310874.16170K562UCHL5
chr63616902636169091+CDS3.905573.21205HepG2EIF3H
chr63616476436164871+intron-Distal,intron-Proximal4.112984.03786HepG2NKRF
chr63617311036173175+intron-Distal4.532615.41368HepG2PTBP1
chr63617311536173176+intron-Distal3.573033.97268K562PTBP1
chr63616573936165826+intron-Distal4.021413.62366HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for BRPF3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for BRPF3 is not available on ENCORE database.

  • 115 RBPs can affect the levels of BRPF3.  








The Knockdown/knockout RNA-Seq assay for BRPF3 is not available on ENCORE database.





115 RBPs can affect the gene expression of BRPF3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
BRPF3ENSG00000096070.15942.770201209.76790-0.359802.807701.72810HepG2AATF
BRPF3ENSG00000096070.152986.779902074.990200.525404.522403.86400HepG2AKAP1
BRPF3ENSG00000096070.151729.616202285.97490-0.402403.069301.97590HepG2AKAP8
BRPF3ENSG00000096070.152189.122101855.148000.238702.821502.04810HepG2AKAP8L
BRPF3ENSG00000096070.153275.358202571.456100.349003.328901.79470HepG2ATP5C1
BRPF3ENSG00000096070.151773.567202355.57680-0.409403.061702.34500HepG2AUH
BRPF3ENSG00000096070.152531.854703294.81410-0.380002.365901.80760HepG2BOP1
BRPF3ENSG00000096070.152007.698101631.096800.299602.030001.36140HepG2CIRBP
BRPF3ENSG00000096070.151534.478501846.05170-0.266703.816103.05850HepG2CKAP4
BRPF3ENSG00000096070.151176.721001632.00430-0.471907.178906.23540HepG2CELF1
BRPF3ENSG00000096070.152027.436201334.493900.603308.107807.00990HepG2DDX21
BRPF3ENSG00000096070.152706.630001987.486700.445503.882503.15220HepG2DDX3X
BRPF3ENSG00000096070.151162.303201493.92740-0.362102.315401.60140HepG2DDX55
BRPF3ENSG00000096070.151800.226301421.708100.340503.188002.43770HepG2DNAJC21
BRPF3ENSG00000096070.152226.178901615.767800.462204.439103.29830HepG2EEF2
BRPF3ENSG00000096070.152159.799201641.246900.396003.082602.45750HepG2EIF2S1
BRPF3ENSG00000096070.152833.405202161.768300.390204.670303.17320HepG2EIF2S2
BRPF3ENSG00000096070.151727.818801311.690800.397403.057202.11130HepG2EIF3D
BRPF3ENSG00000096070.151778.654101260.350600.496906.418104.87660HepG2EIF3G
BRPF3ENSG00000096070.152465.890401813.548200.443203.310802.61260HepG2EIF4A3
BRPF3ENSG00000096070.152898.597801766.168600.714606.370905.35790HepG2EIF4B
BRPF3ENSG00000096070.152493.436401658.371000.588307.622206.30040HepG2EIF4G2
BRPF3ENSG00000096070.153274.746902704.287200.276002.447301.87570HepG2ETF1
BRPF3ENSG00000096070.153575.135002877.779600.312902.001001.34070HepG2FIP1L1
BRPF3ENSG00000096070.151880.373801167.905400.687008.669907.13020HepG2GEMIN5
BRPF3ENSG00000096070.151774.156601203.715400.559505.322603.90350HepG2GNB2L1
BRPF3ENSG00000096070.154614.038403429.211000.428103.178902.49800HepG2GPKOW
BRPF3ENSG00000096070.152175.704801435.327500.600007.761006.76090HepG2HNRNPA1
BRPF3ENSG00000096070.151414.957301719.87500-0.281501.973701.37670HepG2HNRNPK
BRPF3ENSG00000096070.152627.132903272.53720-0.316902.034601.48600HepG2HNRNPLL
BRPF3ENSG00000096070.152379.484801725.521300.463504.213903.39620HepG2IGF2BP2
BRPF3ENSG00000096070.151902.672701620.006100.231903.076802.30690HepG2ILF2
BRPF3ENSG00000096070.154985.238103039.961800.713507.482006.10460HepG2LARP4
BRPF3ENSG00000096070.154201.678002328.817100.8513019.3896017.49770HepG2MSI2
BRPF3ENSG00000096070.152320.054701884.531400.299901.896501.36660HepG2NCBP2
BRPF3ENSG00000096070.151466.767101739.95890-0.246402.120301.45100HepG2NOL12
BRPF3ENSG00000096070.151850.700702901.55390-0.648804.592803.63580HepG2NSUN2
BRPF3ENSG00000096070.152484.425501677.888800.566205.783804.75330HepG2PABPC4
BRPF3ENSG00000096070.151335.272201747.04110-0.387803.362702.70760HepG2PCBP1
BRPF3ENSG00000096070.151544.830902034.42520-0.397206.231105.12210HepG2PRPF4
BRPF3ENSG00000096070.152168.054301777.778100.286204.148803.50920HepG2PTBP1
BRPF3ENSG00000096070.152381.340001763.231800.4335011.1854010.16090HepG2PUM1
BRPF3ENSG00000096070.152597.565001761.921900.559909.829308.60610HepG2PUM2
BRPF3ENSG00000096070.152424.144101880.832000.366006.882305.98580HepG2PUS1
BRPF3ENSG00000096070.151529.177701925.16780-0.332203.540702.84610HepG2QKI
BRPF3ENSG00000096070.152665.587802260.331700.237802.051401.58740HepG2RBM22
BRPF3ENSG00000096070.153813.872403010.244000.341303.403702.65730HepG2RPLP0
BRPF3ENSG00000096070.152335.769801276.291600.8718018.0837016.71490HepG2RPS19
BRPF3ENSG00000096070.151816.352901311.643500.469604.152703.18150HepG2RPS2
BRPF3ENSG00000096070.15845.878901139.87550-0.430402.873002.07320HepG2RRP9
BRPF3ENSG00000096070.151852.774201281.022900.532305.625704.29770HepG2SERBP1
BRPF3ENSG00000096070.152110.146501592.687000.405808.689207.55540HepG2SLBP
BRPF3ENSG00000096070.152276.819601931.823000.237003.188102.69000HepG2SRSF1
BRPF3ENSG00000096070.152475.719501640.011500.5940015.0928013.79980HepG2SRSF5
BRPF3ENSG00000096070.152207.681301571.703000.4901011.0537010.07980HepG2SRSF9
BRPF3ENSG00000096070.15837.647401142.32690-0.447602.723201.63210HepG2STIP1
BRPF3ENSG00000096070.152422.886101865.108600.377404.961004.17000HepG2SUCLG1
BRPF3ENSG00000096070.151884.204601487.147000.341302.054201.45840HepG2SUPV3L1
BRPF3ENSG00000096070.151216.372301736.59770-0.513707.604306.75030HepG2TAF15
BRPF3ENSG00000096070.151977.292101541.155900.359403.124402.59850HepG2TIAL1
BRPF3ENSG00000096070.151873.609501554.821600.269003.455002.84060HepG2TRIM56
BRPF3ENSG00000096070.151997.906501622.758300.299902.846601.96030HepG2TUFM
BRPF3ENSG00000096070.153507.609802461.599900.510805.786804.89580HepG2U2AF1
BRPF3ENSG00000096070.154106.609502079.380800.981703.208602.14570HepG2U2AF2
BRPF3ENSG00000096070.153591.995102469.576900.5404015.6954014.44070HepG2UTP3
BRPF3ENSG00000096070.151157.509401463.93410-0.338802.360901.68660HepG2XRN2
BRPF3ENSG00000096070.153514.897502813.228300.321207.585906.79680HepG2ZNF622
BRPF3ENSG00000096070.151753.489701401.185800.323502.312401.71380K562AKAP8L
BRPF3ENSG00000096070.152046.170201171.852500.8040012.5174011.39990K562AQR
BRPF3ENSG00000096070.15997.87890785.673400.344803.216201.78290K562BCCIP
BRPF3ENSG00000096070.15965.65260759.239300.346803.550202.45630K562BCLAF1
BRPF3ENSG00000096070.152176.615601380.405400.656908.260306.71570K562BOP1
BRPF3ENSG00000096070.151384.37460682.723201.0198011.532708.90760K562CCAR1
BRPF3ENSG00000096070.152115.304801609.214400.394404.899803.29000K562CCDC124
BRPF3ENSG00000096070.152489.012901724.164900.529603.696901.98770K562CKAP4
BRPF3ENSG00000096070.152615.157901543.236100.760805.322103.78810K562CNOT7
BRPF3ENSG00000096070.151914.116401503.793400.348004.156002.77950K562CPEB4
BRPF3ENSG00000096070.152027.096401467.726500.465705.962704.81610K562CPSF6
BRPF3ENSG00000096070.151339.55000739.340100.8573015.2236012.67340K562DDX3X
BRPF3ENSG00000096070.154542.307201556.329701.54520101.1839097.78130K562DDX47
BRPF3ENSG00000096070.151257.68510764.346100.718406.724604.53990K562DHX30
BRPF3ENSG00000096070.151037.22150734.143000.498504.350502.63800K562DNAJC21
BRPF3ENSG00000096070.151159.88760723.633300.680605.221803.42460K562EEF2
BRPF3ENSG00000096070.151047.44200812.167800.366904.183702.67370K562EIF2S1
BRPF3ENSG00000096070.153022.43970694.432002.1217036.3106033.22580K562EIF3A
BRPF3ENSG00000096070.151108.65430748.409600.566804.206302.89500K562EIF3D
BRPF3ENSG00000096070.151117.99920475.553101.233109.411407.94380K562EIF3G
BRPF3ENSG00000096070.151238.11480772.452700.680508.762307.30070K562EIF4A3
BRPF3ENSG00000096070.15917.72290695.659300.399604.139102.67650K562EIF4B
BRPF3ENSG00000096070.152760.070201628.027600.7615021.6052019.15820K562EIF4G2
BRPF3ENSG00000096070.15867.52730674.288200.363402.996401.63800K562EWSR1
BRPF3ENSG00000096070.151068.35780763.449100.484703.716802.38330K562FKBP4
BRPF3ENSG00000096070.152223.186501493.455400.573906.810305.44540K562FMR1
BRPF3ENSG00000096070.152202.825701265.872300.7991010.888308.94660K562FTO
BRPF3ENSG00000096070.151081.82740803.322600.429305.125804.33750K562FXR1
BRPF3ENSG00000096070.151748.870301072.013200.7060014.2013011.92930K562GLRX3
BRPF3ENSG00000096070.152502.151901401.285100.8363011.653009.99920K562GPKOW
BRPF3ENSG00000096070.151546.57700900.623600.7800013.6445011.54100K562HNRNPA1
BRPF3ENSG00000096070.152112.94270878.962001.2653033.5908031.57670K562HNRNPC
BRPF3ENSG00000096070.151237.72510785.014000.656808.357106.29070K562HNRNPF
BRPF3ENSG00000096070.15950.53200702.697900.435702.662901.66210K562IGF2BP2
BRPF3ENSG00000096070.152369.492801409.269000.749504.822902.91360K562ILF2
BRPF3ENSG00000096070.151089.53670689.254900.660504.016002.22290K562KHDRBS1
BRPF3ENSG00000096070.151724.550601196.607800.527203.864902.74820K562KRR1
BRPF3ENSG00000096070.151829.802101367.824300.419704.483303.35130K562METAP2
BRPF3ENSG00000096070.152626.819201735.363300.598008.392906.47610K562MSI2
BRPF3ENSG00000096070.151013.47120771.306600.393803.697402.25500K562NCBP2
BRPF3ENSG00000096070.151534.284801252.339900.292804.277003.37130K562NSUN2
BRPF3ENSG00000096070.152218.521101482.603000.581403.134501.81200K562PABPC1
BRPF3ENSG00000096070.152490.957401903.390000.388003.050202.17750K562PCBP3
BRPF3ENSG00000096070.152127.346801373.279300.631304.677302.32130K562PPIL4
BRPF3ENSG00000096070.152595.663501776.339600.547107.414906.07580K562PUF60
BRPF3ENSG00000096070.152158.408301851.264600.221402.502101.58770K562PUM2
BRPF3ENSG00000096070.151927.045101389.539800.471703.291802.70730K562PUS1
BRPF3ENSG00000096070.151685.562701353.940400.316003.477302.82480K562RBM15
BRPF3ENSG00000096070.15937.13470687.855800.446103.723902.73720K562RBM22
BRPF3ENSG00000096070.15965.91220719.181400.425403.876202.70160K562RCC2
BRPF3ENSG00000096070.151945.71760692.887301.4895028.2162025.66230K562RPS19
BRPF3ENSG00000096070.152549.848401376.853500.888907.666604.88110K562RPS3A
BRPF3ENSG00000096070.151781.426001342.793700.407703.284002.18430K562RPS3
BRPF3ENSG00000096070.151767.295301301.044200.441804.767303.34220K562SAFB
BRPF3ENSG00000096070.152125.719501405.812300.596403.741701.90250K562SBDS
BRPF3ENSG00000096070.151859.522001345.016800.467204.620802.73960K562SDAD1
BRPF3ENSG00000096070.151943.364101235.646300.6532013.6653011.96420K562SF3A3
BRPF3ENSG00000096070.152261.075001332.790100.762509.174307.32630K562SF3B1
BRPF3ENSG00000096070.15712.43410540.497700.398402.193801.43380K562SF3B4
BRPF3ENSG00000096070.151138.95880751.882600.599006.333604.42460K562SLBP
BRPF3ENSG00000096070.151002.74050681.750900.556505.299503.74430K562SRFBP1
BRPF3ENSG00000096070.151845.720401265.937900.5439012.3731010.57790K562SRPK2
BRPF3ENSG00000096070.15869.75250703.315400.306302.084501.46090K562SRSF1
BRPF3ENSG00000096070.15921.09580664.257500.471503.972602.67350K562SRSF5
BRPF3ENSG00000096070.151737.991401307.820400.410202.577301.45050K562SRSF7
BRPF3ENSG00000096070.151294.24030658.535100.9747012.4313010.23480K562SUPV3L1
BRPF3ENSG00000096070.151137.83230711.775700.676705.654504.62270K562TARDBP
BRPF3ENSG00000096070.15870.32050686.594700.342002.542301.76170K562TIA1
BRPF3ENSG00000096070.151303.95810758.013100.782509.109207.33840K562TIAL1
BRPF3ENSG00000096070.151208.43600805.440200.585206.541204.94340K562TRIM56
BRPF3ENSG00000096070.152425.047302002.553600.276102.685101.30730K562UBE2L3
BRPF3ENSG00000096070.151112.94520697.054400.674906.894505.20690K562UCHL5
BRPF3ENSG00000096070.152018.230101327.877600.6039013.9837012.52050K562UPF1
BRPF3ENSG00000096070.152051.489401504.595500.447203.609102.22910K562UTP3
BRPF3ENSG00000096070.151747.729601136.231000.621109.150507.52010K562WDR3
BRPF3ENSG00000096070.151966.895401181.492600.7352021.8554019.82660K562WDR43
BRPF3ENSG00000096070.152083.693001388.702700.585308.525206.33000K562WRN
BRPF3ENSG00000096070.152463.191301319.996300.8999017.9171015.58150K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for BRPF3 is not available on ENCORE database.





2 RBPs can affect the splicing of BRPF3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEBRPF3ENSG00000096070.15chr6+361899443619004236185693361857873619304336193141-0.141000.003960.04397excludedHepG2U2AF2
MXEBRPF3ENSG00000096070.15chr6+36179034361793373618569336185787361779923617830536189944361900420.112000.004820.071331includedHepG2FTO

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for BRPF3 is not avaliable on ENCORE database.