ATAD1

General Information

Gene Name       : ATAD1
Gene ID             : ENSG00000138138.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ATAD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATAD1ENSG00000138138.1335.8629.4432.65ENCSR000AEF
HepG2ATAD1ENSG00000138138.1313.1821.8517.52ENCSR985KAT
K562ATAD1ENSG00000138138.1315.6218.0216.82ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATAD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATAD1 RNA is bound by 14 proteins.  







eCLIP assay for ATAD1 is not avaliable on ENCORE database.





14 proteins are bound to ATAD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr108951401589514114-3'-UTR,intron-Distal4.098416.86504K562TARDBP
chr108951438589514424-3'-UTR,intron-Distal4.428797.91848K562PUM2
chr108951304489513122-3'-UTR,intron-Distal3.002643.68882K562FAM120A
chr108951394689514010-3'-UTR,intron-Distal,intron-Proximal3.437854.56889HepG2FUBP3
chr108951396289514102-3'-UTR,intron-Distal,intron-Proximal3.924068.75659K562PUM2
chr108951299789513133-3'-UTR,intron-Distal3.860233.74511K562IGF2BP1
chr108951348689513524-3'-UTR,intron-Distal4.712244.37192HepG2FUBP3
chr108951425089514297-3'-UTR,intron-Distal5.070714.77410HepG2SUB1
chr108951417189514198-3'-UTR,intron-Distal4.436476.21733K562PUM2
chr108957776689577839-5'-UTR,intron-Distal5.473755.29846HepG2DDX3X
chr108955013889550187-CDS,intron-Distal5.026886.58593HepG2BCLAF1
chr108955241289552494-CDS,intron-Distal,intron-Proximal4.285036.22576HepG2BCLAF1
chr108954426089544340-CDS,intron-Distal,intron-Proximal4.589955.02285K562SND1
chr108951663789516681-CDS,intron-Distal,intron-Proximal3.461593.27569HepG2BCLAF1
chr108954431489544429-CDS,intron-Distal,intron-Proximal4.011083.14999HepG2GRWD1
chr108954437389544428-CDS,intron-Distal,intron-Proximal3.807324.66892HepG2SND1
chr108957425089574299-CDS,intron-Distal4.059105.36555HepG2BCLAF1
chr108952743789527481-CDS,intron-Distal,intron-Proximal4.385593.45943HepG2BCLAF1
chr108953070889530729-CDS,intron-Distal,intron-Proximal4.300623.02457HepG2BCLAF1
chr108953607789536166-CDS,intron-Distal,intron-Proximal3.652724.68317K562SND1
chr108951447489514558-CDS,intron-Distal3.170813.17151K562UCHL5
chr108953073889530797-CDS,intron-Distal3.596944.39950HepG2SND1
chr108952651989526571-intron-Distal4.895178.83942HepG2HNRNPC
chr108951773489517796-intron-Distal4.078263.73609HepG2KHSRP
chr108951970789519785-intron-Distal4.113453.75546HepG2KHSRP
chr108957730189577419-intron-Distal4.195493.47043HepG2KHSRP
chr108951811989518170-intron-Distal4.388537.98209HepG2U2AF2
chr108951853389518618-intron-Distal4.156364.10688K562KHSRP
chr108951802189518094-intron-Distal4.328397.98209HepG2U2AF2
chr108951939089519436-intron-Distal,intron-Proximal4.079374.79983HepG2U2AF2
chr108951773089517794-intron-Distal4.583285.68841K562KHSRP
chr108951787489517951-intron-Distal3.244466.23972K562KHSRP
chr108951973189519849-intron-Distal3.785926.04886K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATAD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATAD1 is not available on ENCORE database.

  • 99 RBPs can affect the levels of ATAD1.  








The Knockdown/knockout RNA-Seq assay for ATAD1 is not available on ENCORE database.





99 RBPs can affect the gene expression of ATAD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATAD1ENSG00000138138.91069.89520839.225600.350202.555701.52240HepG2AATF
ATAD1ENSG00000138138.9897.371801267.41350-0.498103.766702.67570HepG2ABCF1
ATAD1ENSG00000138138.91529.910601900.92970-0.313301.780901.34440HepG2AKAP1
ATAD1ENSG00000138138.91190.101801572.87590-0.402303.024602.20390HepG2ASCC1
ATAD1ENSG00000138138.91864.808101501.157300.312903.898403.10890HepG2AUH
ATAD1ENSG00000138138.91681.231701065.150800.658408.774807.78100HepG2BOP1
ATAD1ENSG00000138138.9797.319701060.17870-0.411105.788904.89000HepG2CKAP4
ATAD1ENSG00000138138.9692.86670977.88160-0.497104.032703.21680HepG2CPSF6
ATAD1ENSG00000138138.91720.091001352.308400.347003.100102.42750HepG2CELF1
ATAD1ENSG00000138138.9971.657901454.31990-0.5818010.202008.91790HepG2DAZAP1
ATAD1ENSG00000138138.91795.175601110.451400.692904.087702.91120HepG2DDX59
ATAD1ENSG00000138138.9828.396101014.53770-0.292402.654401.98900HepG2DKC1
ATAD1ENSG00000138138.9716.99270991.99800-0.468403.373602.36250HepG2EEF2
ATAD1ENSG00000138138.9921.421801503.76430-0.706607.928806.96090HepG2EIF2S1
ATAD1ENSG00000138138.9745.42900961.56210-0.367302.730601.57040HepG2EIF2S2
ATAD1ENSG00000138138.9845.307601661.87550-0.9753012.5947011.25900HepG2EIF4A3
ATAD1ENSG00000138138.9990.487601434.55500-0.534409.472308.10360HepG2EIF4G1
ATAD1ENSG00000138138.91978.437201723.567800.198901.942201.41870HepG2ETF1
ATAD1ENSG00000138138.9549.17950719.67940-0.390103.023601.79430HepG2FAM120A
ATAD1ENSG00000138138.9925.758701676.64440-0.8569011.4742010.16340HepG2FXR1
ATAD1ENSG00000138138.91112.257501651.17070-0.570005.774104.47770HepG2G3BP2
ATAD1ENSG00000138138.9401.58750717.04510-0.836308.903507.34040HepG2GEMIN5
ATAD1ENSG00000138138.9824.607001108.54650-0.426902.821702.17520HepG2GPKOW
ATAD1ENSG00000138138.9834.151301039.82770-0.318001.987101.38880HepG2HNRNPC
ATAD1ENSG00000138138.91250.892901574.83380-0.332202.460401.79990HepG2HNRNPK
ATAD1ENSG00000138138.91043.527901324.85180-0.344403.923903.13240HepG2HNRNPL
ATAD1ENSG00000138138.9764.836601032.95630-0.433604.166303.43470HepG2HNRNPU
ATAD1ENSG00000138138.9843.944301079.04230-0.354503.106002.34200HepG2IGF2BP1
ATAD1ENSG00000138138.91053.702801445.24080-0.455803.052501.78690HepG2KHDRBS1
ATAD1ENSG00000138138.91149.335301590.22260-0.468403.004601.95330HepG2KHSRP
ATAD1ENSG00000138138.91125.147901677.22920-0.576005.537004.61880HepG2MAGOH
ATAD1ENSG00000138138.91228.253601686.63570-0.457503.389502.69790HepG2MATR3
ATAD1ENSG00000138138.91083.02100869.852400.316102.453401.31200HepG2NAA15
ATAD1ENSG00000138138.91200.117301726.38110-0.524604.503703.70520HepG2NCBP2
ATAD1ENSG00000138138.9355.33080602.08950-0.760804.246002.27680HepG2PA2G4
ATAD1ENSG00000138138.91192.855201537.52680-0.366202.517401.82560HepG2PABPC4
ATAD1ENSG00000138138.91308.893901520.28780-0.216002.209001.65560HepG2PCBP1
ATAD1ENSG00000138138.9399.12610665.97270-0.738607.860405.87380HepG2PKM
ATAD1ENSG00000138138.9702.69190921.32210-0.390803.340002.53630HepG2PPIL4
ATAD1ENSG00000138138.9973.39680749.038900.377904.052903.13570HepG2PRPF4
ATAD1ENSG00000138138.9983.37680725.287300.439103.336102.45800HepG2PRPF8
ATAD1ENSG00000138138.91791.419901461.160900.293904.106603.41470HepG2PUM1
ATAD1ENSG00000138138.9850.136401080.11230-0.345404.132203.40570HepG2PUS1
ATAD1ENSG00000138138.91708.225901063.808400.683204.089503.24110HepG2RAVER1
ATAD1ENSG00000138138.92250.511701440.575700.6435013.6707012.69340HepG2RBM22
ATAD1ENSG00000138138.9602.168501191.11390-0.9841013.4780011.29250HepG2RBM27
ATAD1ENSG00000138138.91143.725401721.58880-0.5900011.8207010.85220HepG2NELFE
ATAD1ENSG00000138138.91184.788001603.33140-0.436404.949204.15540HepG2RECQL
ATAD1ENSG00000138138.9579.77360783.57720-0.434603.418802.74460HepG2RPS19
ATAD1ENSG00000138138.9854.697601098.56610-0.362102.301301.56770HepG2RPS2
ATAD1ENSG00000138138.9993.174201523.08320-0.616904.681203.64280HepG2RPS3A
ATAD1ENSG00000138138.91040.00240717.501600.535404.429403.45990HepG2RRP9
ATAD1ENSG00000138138.9600.00890786.49680-0.390502.395901.51920HepG2SERBP1
ATAD1ENSG00000138138.91730.706001285.619300.428802.676002.01320HepG2SF3A3
ATAD1ENSG00000138138.91665.965301047.138500.669808.662107.48050HepG2SF3B1
ATAD1ENSG00000138138.9847.134001072.82460-0.340803.114402.43780HepG2SMN1
ATAD1ENSG00000138138.91702.404701165.116600.547003.331102.46980HepG2SNRNP70
ATAD1ENSG00000138138.93260.239101627.063201.0026046.9204045.51810HepG2SRFBP1
ATAD1ENSG00000138138.91144.080201367.62010-0.257502.929002.36450HepG2SRSF9
ATAD1ENSG00000138138.9808.241001412.65140-0.8055019.9657018.86110HepG2SSB
ATAD1ENSG00000138138.91163.67060935.521800.314701.936001.35600HepG2SUPV3L1
ATAD1ENSG00000138138.9714.597201003.87440-0.490403.728303.16640HepG2TIAL1
ATAD1ENSG00000138138.9654.748201012.67180-0.629208.334007.43950HepG2TRIM56
ATAD1ENSG00000138138.91551.108801094.882700.502404.692703.88640HepG2U2AF1
ATAD1ENSG00000138138.91112.693601423.22520-0.355102.413501.63590HepG2UBE2L3
ATAD1ENSG00000138138.91413.246601100.769400.360405.007104.24190HepG2UTP3
ATAD1ENSG00000138138.9522.15630920.91490-0.818603.070202.30760HepG2XRN2
ATAD1ENSG00000138138.91480.850501062.401800.479003.014001.65680HepG2ZRANB2
ATAD1ENSG00000138138.91950.291401611.817900.274903.345602.73300K562AGGF1
ATAD1ENSG00000138138.91303.710401753.03010-0.427203.616102.96280K562AQR
ATAD1ENSG00000138138.9306.16000492.56410-0.686005.402303.81560K562CCAR1
ATAD1ENSG00000138138.91067.220801532.95870-0.522502.625101.59610K562CNOT7
ATAD1ENSG00000138138.9747.698301096.33970-0.552204.748203.72500K562CPSF6
ATAD1ENSG00000138138.91520.890601752.12810-0.204201.960701.39440K562DDX47
ATAD1ENSG00000138138.9409.53440551.39790-0.429102.595101.31240K562DHX30
ATAD1ENSG00000138138.92294.340201804.829900.346104.653103.47220K562DKC1
ATAD1ENSG00000138138.9829.219101149.04320-0.470606.455104.57840K562EIF2S1
ATAD1ENSG00000138138.9882.523601151.56380-0.383904.286003.41910K562EIF2S2
ATAD1ENSG00000138138.9752.56470921.35220-0.291902.220501.50160K562EIF3G
ATAD1ENSG00000138138.9691.93180984.21880-0.508306.091104.25590K562EIF4B
ATAD1ENSG00000138138.91829.809702221.29700-0.279703.267202.24890K562EIF4G2
ATAD1ENSG00000138138.9832.098301115.42420-0.422803.287102.35030K562FMR1
ATAD1ENSG00000138138.9680.09710945.38990-0.475203.579302.52780K562FTO
ATAD1ENSG00000138138.9922.754501136.56230-0.300702.772502.16690K562FXR1
ATAD1ENSG00000138138.91695.752701216.484500.479103.041502.29420K562G3BP2
ATAD1ENSG00000138138.9701.020601046.76580-0.578405.475304.36420K562GPKOW
ATAD1ENSG00000138138.9987.776501534.59910-0.635608.671607.31350K562GRSF1
ATAD1ENSG00000138138.9521.39080993.98520-0.9309013.8624012.60820K562HNRNPC
ATAD1ENSG00000138138.9670.37350887.56940-0.404903.104101.88930K562HNRNPF
ATAD1ENSG00000138138.91257.416201583.48250-0.332602.940801.84810K562HNRNPL
ATAD1ENSG00000138138.91111.091901386.81600-0.319802.538301.68100K562HNRNPU
ATAD1ENSG00000138138.91025.642801384.94340-0.433304.548803.33860K562MATR3
ATAD1ENSG00000138138.9785.171001021.74710-0.380003.025802.10790K562METAP2
ATAD1ENSG00000138138.91826.336802367.67840-0.374503.269102.03690K562MSI2
ATAD1ENSG00000138138.9748.696901224.73760-0.710008.354907.02090K562MTPAP
ATAD1ENSG00000138138.92208.063401397.621200.659705.801104.35430K562NAA15
ATAD1ENSG00000138138.91055.183501360.83650-0.367005.887104.85570K562NSUN2
ATAD1ENSG00000138138.9741.89260970.39150-0.387402.878001.42180K562PHF6
ATAD1ENSG00000138138.9559.21280715.15530-0.354902.378001.63650K562POLR2G
ATAD1ENSG00000138138.9585.44770891.19500-0.606205.219803.92400K562PSIP1
ATAD1ENSG00000138138.91082.682401348.21970-0.316402.771102.10620K562PTBP1
ATAD1ENSG00000138138.93110.815802577.897700.271002.753601.69010K562PUM1
ATAD1ENSG00000138138.91960.440002525.81020-0.365605.242303.90220K562PUM2
ATAD1ENSG00000138138.92096.357201663.381500.333702.560702.03390K562PUS1
ATAD1ENSG00000138138.91889.765101620.628600.221601.909901.40150K562RBM15
ATAD1ENSG00000138138.9997.297101292.96510-0.374603.076502.18570K562RBM22
ATAD1ENSG00000138138.9985.815701360.59600-0.464804.107402.74390K562NELFE
ATAD1ENSG00000138138.9691.18290956.57890-0.468802.703501.71200K562RPS3
ATAD1ENSG00000138138.9483.76190770.72830-0.671906.472704.71840K562SRFBP1
ATAD1ENSG00000138138.91114.876401375.65450-0.303203.888802.79770K562SRPK2
ATAD1ENSG00000138138.9665.39250923.59050-0.473004.152102.82550K562SRSF4
ATAD1ENSG00000138138.9554.61240753.51670-0.442202.636601.64510K562SUPV3L1
ATAD1ENSG00000138138.9767.656201337.69460-0.8012010.710909.16540K562TARDBP
ATAD1ENSG00000138138.9550.92490857.19040-0.637805.428104.07470K562TIAL1
ATAD1ENSG00000138138.9556.16440910.56320-0.711208.008806.20070K562TRIM56
ATAD1ENSG00000138138.9588.35620797.47450-0.438702.931301.87720K562UCHL5
ATAD1ENSG00000138138.9984.383701442.92040-0.5517010.461009.17840K562UPF1
ATAD1ENSG00000138138.91003.849801234.66700-0.298602.420801.60000K562WDR3
ATAD1ENSG00000138138.9572.09930812.00460-0.505203.773302.28350K562XRN2
ATAD1ENSG00000138138.91360.719201974.76650-0.537306.622505.19800K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATAD1 is not available on ENCORE database.





3 RBPs can affect the splicing of ATAD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEATAD1ENSG00000138138.9chr10-895360778953618489530708895307988954422689544453-0.063000.000070.00133excludedK562AQR
SEATAD1ENSG00000138138.9chr10-8951945789519544895165458951667989527429895274800.103000.000000.00003includedHepG2IGF2BP3
SEATAD1ENSG00000138138.9chr10-8955106089551209895500668955018789552413895525140.142000.000040.00115includedK562HNRNPC
A3SSATAD1ENSG00000138138.9chr10-8955006689550275895500668955018789552413895525380.077000.000000.00000longerK562AQR
A3SSATAD1ENSG00000138138.9chr10-8954430889544552895443088954442789550066895502180.081000.000000.00000longerK562AQR
A3SSATAD1ENSG00000138138.9chr10-8955241389552535895524138955251289574194895746390.098000.000000.00000longerK562AQR
A3SSATAD1ENSG00000138138.9chr10-8951654589516701895165458951667989527429895274800.096000.000000.00000longerK562AQR
MXEATAD1ENSG00000138138.9chr10-89530708895307988954422689544453895274298952748089550066895501870.058000.002690.021361includedK562AQR
MXEATAD1ENSG00000138138.9chr10-89536077895361848954422689544453895307088953079889550066895501870.098000.000000.000011includedK562AQR
MXEATAD1ENSG00000138138.9chr10-89536077895361848954422689544470895307088953079889550066895501870.067000.000080.000971includedK562AQR
MXEATAD1ENSG00000138138.9chr10-89536077895361848954422689544403895307088953079889550066895501870.071000.000030.000461includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATAD1 is not avaliable on ENCORE database.