ARFGAP1

General Information

Gene Name : ARFGAP1
Gene ID : ENSG00000101199.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ARFGAP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ARFGAP1	ENSG00000101199.12	4.31	10.82	7.56	ENCSR000AEF
HepG2	ARFGAP1	ENSG00000101199.12	193.00	58.13	125.56	ENCSR985KAT
K562	ARFGAP1	ENSG00000101199.12	32.65	16.75	24.70	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ARFGAP1 is not avaliable on ENCORE database.

Proteins bound to RNA

ARFGAP1 RNA is bound by 47 proteins.

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eCLIP assay for ARFGAP1 is not avaliable on ENCORE database.

47 proteins are bound to ARFGAP1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	61916150	61916250	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.83395	400.00000	HepG2	SF3A3
chr20	61916020	61916077	+	intron-Distal	5.66783	400.00000	HepG2	RBFOX2
chr20	61915854	61915907	+	intron-Distal,intron-Proximal	6.25666	400.00000	HepG2	RBFOX2
chr20	61915024	61915098	+	intron-Distal	5.39759	400.00000	HepG2	RBFOX2
chr20	61914710	61914744	+	intron-Distal	4.92754	400.00000	HepG2	RBFOX2
chr20	61915233	61915250	+	intron-Distal,intron-Proximal	6.57758	400.00000	HepG2	RBFOX2
chr20	61915907	61915929	+	intron-Distal,intron-Proximal	6.28941	400.00000	HepG2	RBFOX2
chr20	61914684	61914710	+	intron-Distal	4.69135	400.00000	HepG2	RBFOX2
chr20	61915941	61915994	+	intron-Distal,intron-Proximal	6.01963	400.00000	HepG2	RBFOX2
chr20	61915277	61915338	+	intron-Distal,intron-Proximal	6.62017	400.00000	HepG2	RBFOX2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 357 entries

eCLIP assay for ARFGAP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ARFGAP1 is not available on ENCORE database.
123 RBPs can affect the levels of ARFGAP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ARFGAP1 is not available on ENCORE database.

123 RBPs can affect the gene expression of ARFGAP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ARFGAP1	ENSG00000101199.8	4274.26590	1697.97620	1.33180	94.71970	92.02760	HepG2	SAFB2
ARFGAP1	ENSG00000101199.8	3336.75890	1694.18270	0.97780	53.60180	51.03390	HepG2	DNAJC2
ARFGAP1	ENSG00000101199.8	7333.37680	4056.75830	0.85410	40.78740	39.20450	HepG2	PTBP1
ARFGAP1	ENSG00000101199.8	4661.12050	1869.28060	1.31810	32.67740	31.00650	HepG2	TRIM56
ARFGAP1	ENSG00000101199.8	4931.72790	2132.56380	1.20940	29.70620	28.10480	HepG2	BOP1
ARFGAP1	ENSG00000101199.8	6973.78060	3436.24300	1.02100	29.01970	27.36150	HepG2	PUF60
ARFGAP1	ENSG00000101199.8	5100.01870	3294.91960	0.63020	28.43340	26.65310	HepG2	SLBP
ARFGAP1	ENSG00000101199.8	3173.46380	1700.61370	0.89990	28.82280	26.65160	HepG2	PPIL4
ARFGAP1	ENSG00000101199.8	3490.89390	1709.17270	1.03020	28.24650	26.27470	HepG2	DNAJC21
ARFGAP1	ENSG00000101199.8	3153.40910	1980.09330	0.67120	27.90800	26.21530	HepG2	SMN1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 136 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ARFGAP1 is not available on ENCORE database.

23 RBPs can affect the splicing of ARFGAP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ARFGAP1	ENSG00000101199.8	chr20	+	61908556	61908657			61907831	61908003	61909468	61909555	-0.14900	0.00000	0.00000	excluded	HepG2	U2AF1
A3SS	ARFGAP1	ENSG00000101199.8	chr20	+	61917717	61917794			61917723	61917794	61917005	61917065	-0.12600	0.00000	0.00100	shorter	HepG2	MATR3
SE	ARFGAP1	ENSG00000101199.8	chr20	+	61908556	61908657			61907831	61908003	61909468	61909555	-0.12000	0.00001	0.00021	excluded	HepG2	U2AF2
MXE	ARFGAP1	ENSG00000101199.8	chr20	+	61906928	61906992	61907442	61907552	61904180	61904272	61907831	61908003	0.15600	0.00001	0.00048	1included	HepG2	DDX55
MXE	ARFGAP1	ENSG00000101199.8	chr20	+	61906928	61906974	61916217	61916274	61904164	61904272	61917005	61917065	0.21200	0.00003	0.00221	1included	K562	XRN2
RI	ARFGAP1	ENSG00000101199.8	chr20	+	61918915	61921140			61918915	61920848	61921029	61921140	0.30500	0.00004	0.00567	included	K562	SBDS
RI	ARFGAP1	ENSG00000101199.8	chr20	+	61918915	61921140			61918915	61920848	61921029	61921140	0.07000	0.00006	0.00125	included	HepG2	RBM22
SE	ARFGAP1	ENSG00000101199.8	chr20	+	61908556	61908657			61907831	61908003	61909468	61909555	-0.07500	0.00010	0.00389	excluded	HepG2	SRSF1
SE	ARFGAP1	ENSG00000101199.8	chr20	+	61905351	61905562			61904146	61904272	61906928	61906992	-0.20000	0.00015	0.01128	excluded	HepG2	SFPQ
RI	ARFGAP1	ENSG00000101199.8	chr20	+	61918915	61921140			61918915	61920848	61921029	61921140	-0.10400	0.00019	0.01952	excluded	HepG2	SSB

Showing 1 to 10 of 34 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ARFGAP1

General Information

Functions

Localization

Domains (AlphaFold: ARFGAP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ARFGAP1 is not avaliable on ENCORE database.

47 proteins are bound to ARFGAP1 RNA:

eCLIP assay for ARFGAP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ARFGAP1 is not available on ENCORE database.

123 RBPs can affect the gene expression of ARFGAP1 :

The Knockdown/knockout RNA-Seq assay for ARFGAP1 is not available on ENCORE database.

23 RBPs can affect the splicing of ARFGAP1 :

The Knockdown/knockout RNA-Seq assay for ARFGAP1 is not avaliable on ENCORE database.