ABCF2

General Information

Gene Name       : ABCF2
Gene ID             : ENSG00000033050.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ABCF2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ABCF2ENSG00000033050.839.1751.9345.55ENCSR000AEF
HepG2ABCF2ENSG00000033050.825.6829.1727.43ENCSR985KAT
K562ABCF2ENSG00000033050.8119.51119.28119.40ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ABCF2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ABCF2 RNA is bound by 18 proteins.  







eCLIP assay for ABCF2 is not avaliable on ENCORE database.





18 proteins are bound to ABCF2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7150910810150910877-3'-UTR,intron-Distal3.586924.77875HepG2SUB1
chr7150910677150910774-3'-UTR,intron-Distal3.704999.70567K562PABPC4
chr7150910960150911046-3'-UTR,intron-Distal,intron-Proximal3.721425.11028HepG2PCBP2
chr7150924032150924164-5'-UTR,intron-Distal,intron-Proximal5.377716.43928K562GTF2F1
chr7150924046150924099-5'-UTR,intron-Distal,intron-Proximal3.091954.21588K562PRPF8
chr7150924017150924146-5'-UTR,intron-Distal,intron-Proximal4.923087.45950HepG2PRPF4
chr7150924248150924299-5'-UTR,intron-Distal,intron-Proximal3.645154.08283K562DDX3X
chr7150923476150923589-5'-UTR,CDS,intron-Distal,intron-Proximal3.196135.87906K562UCHL5
chr7150923495150923578-5'-UTR,CDS,intron-Distal,intron-Proximal3.573547.24294K562YBX3
chr7150924000150924110-5'-UTR,intron-Distal,intron-Proximal3.962933.58513HepG2GTF2F1
chr7150921931150922054-CDS,intron-Distal3.111845.40132HepG2BCLAF1
chr7150921965150922069-CDS,intron-Distal3.1126110.39510K562ZNF622
chr7150921981150922112-CDS,intron-Distal,intron-Proximal3.895794.52312K562AQR
chr7150912707150912776-CDS,intron-Distal4.113886.81811K562UCHL5
chr7150923401150923466-CDS,intron-Distal,intron-Proximal3.548047.08969K562ZNF622
chr7150916149150916171-CDS,intron-Distal,intron-Proximal4.443453.61879K562ZNF800
chr7150923389150923476-CDS,intron-Distal,intron-Proximal3.8694211.16705K562UCHL5
chr7150921910150921973-CDS,intron-Distal4.043143.34184HepG2GRWD1
chr7150912687150912739-CDS,intron-Distal,intron-Proximal3.159223.47879HepG2PPIG
chr7150921978150922046-CDS,intron-Distal3.117365.17653K562UCHL5
chr7150920844150920931-CDS,intron-Distal,intron-Proximal3.555706.95218K562UCHL5
chr7150915176150915257-CDS,intron-Distal,intron-Proximal3.904453.02919K562GRWD1
chr7150921920150921968-CDS,intron-Distal4.275904.55095K562YBX3
chr7150920839150920939-CDS,intron-Distal,intron-Proximal4.361044.98808HepG2SRSF1
chr7150921973150922056-CDS,intron-Distal3.342093.39306HepG2GRWD1
chr7150920833150920933-CDS,intron-Distal,intron-Proximal3.830607.04834K562GRWD1
chr7150922059150922075-CDS,intron-Distal,intron-Proximal3.467583.12941K562UCHL5
chr7150920832150920935-CDS,intron-Distal,intron-Proximal3.310658.14373K562ZNF622
chr7150921024150921111-CDS,intron-Distal,intron-Proximal3.214813.49055K562GRWD1
chr7150912719150912804-CDS,intron-Distal3.646425.29272K562BUD13
chr7150921023150921078-CDS,intron-Distal,intron-Proximal4.138325.37538K562ZNF622
chr7150915880150915958-CDS,intron-Distal3.886786.33064K562ZNF800
chr7150919632150919684-CDS,intron-Distal3.220583.41227K562UCHL5
chr7150923887150923938-intron-Distal3.995623.12843K562PRPF8
chr7150919824150919886-intron-Distal4.568337.56720K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ABCF2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ABCF2 is not available on ENCORE database.

  • 113 RBPs can affect the levels of ABCF2.  








The Knockdown/knockout RNA-Seq assay for ABCF2 is not available on ENCORE database.





113 RBPs can affect the gene expression of ABCF2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ABCF2ENSG00000033050.32384.40110959.551401.3131022.3128020.96000HepG2AKAP1
ABCF2ENSG00000033050.3634.59670896.72080-0.498803.446102.44640HepG2BCLAF1
ABCF2ENSG00000033050.31037.16410850.097900.286803.110302.41430HepG2CKAP4
ABCF2ENSG00000033050.3635.271901043.42670-0.715907.715106.61440HepG2CPSF6
ABCF2ENSG00000033050.31632.236201185.042500.461806.562105.65210HepG2CELF1
ABCF2ENSG00000033050.3994.100901274.00110-0.357904.658503.73440HepG2DAZAP1
ABCF2ENSG00000033050.31561.81350919.174400.764708.888207.82100HepG2DDX3X
ABCF2ENSG00000033050.3591.04100789.59730-0.417902.265901.70160HepG2DDX6
ABCF2ENSG00000033050.3452.91780728.20860-0.685108.761807.56480HepG2DNAJC21
ABCF2ENSG00000033050.3454.71380654.18970-0.524803.141301.95300HepG2AGO1
ABCF2ENSG00000033050.3507.18890759.05160-0.581704.401703.66320HepG2EIF2S1
ABCF2ENSG00000033050.3913.58820722.219500.339002.519801.40740HepG2EIF2S2
ABCF2ENSG00000033050.3777.34420502.307000.629904.997203.80800HepG2EIF3D
ABCF2ENSG00000033050.31193.44090816.733100.547103.454502.68900HepG2EIF4B
ABCF2ENSG00000033050.3713.415201204.15200-0.755209.030907.59660HepG2EIF4G2
ABCF2ENSG00000033050.32084.666901764.209400.240702.693902.09950HepG2ETF1
ABCF2ENSG00000033050.31340.06980961.361200.479103.526502.66480HepG2FIP1L1
ABCF2ENSG00000033050.31061.89990846.363000.327201.914801.33490HepG2FXR1
ABCF2ENSG00000033050.3615.38250447.236400.460303.078802.13010HepG2GEMIN5
ABCF2ENSG00000033050.3788.806901182.83160-0.584504.851904.01960HepG2GPKOW
ABCF2ENSG00000033050.3622.66850817.76580-0.393202.738502.04840HepG2HNRNPC
ABCF2ENSG00000033050.3946.772201481.51090-0.6460013.2205011.80760HepG2HNRNPF
ABCF2ENSG00000033050.31211.23370795.018600.607306.265305.24330HepG2HNRNPK
ABCF2ENSG00000033050.3917.044701160.45360-0.339604.065403.26080HepG2HNRNPL
ABCF2ENSG00000033050.3606.595001128.79560-0.8960011.2808010.11390HepG2HNRNPLL
ABCF2ENSG00000033050.3936.630601458.86420-0.639309.695508.41770HepG2IGF2BP1
ABCF2ENSG00000033050.31753.321701273.492600.461203.124602.23920HepG2LARP4
ABCF2ENSG00000033050.3950.64100705.307300.430503.206101.98400HepG2LARP7
ABCF2ENSG00000033050.31392.59820851.395400.709806.844305.88450HepG2MATR3
ABCF2ENSG00000033050.3789.10950525.702300.585902.833401.76720HepG2METAP2
ABCF2ENSG00000033050.3592.185301151.16770-0.959007.905906.23630HepG2MTPAP
ABCF2ENSG00000033050.31426.05470871.449100.710407.448106.43320HepG2NCBP2
ABCF2ENSG00000033050.3991.060001263.30810-0.350203.198302.38100HepG2NOL12
ABCF2ENSG00000033050.3477.402701000.87420-1.0680015.3323013.73010HepG2NSUN2
ABCF2ENSG00000033050.3958.51320804.085800.253302.126501.37610HepG2PARN
ABCF2ENSG00000033050.31179.85540779.805600.5973010.013408.97390HepG2PCBP1
ABCF2ENSG00000033050.3585.26990903.25440-0.626009.216107.92240HepG2PRPF4
ABCF2ENSG00000033050.31123.43130793.464000.501605.334104.62560HepG2PTBP1
ABCF2ENSG00000033050.31959.644001280.286800.6140019.1002017.82550HepG2PUM1
ABCF2ENSG00000033050.3582.69760779.92680-0.420603.370202.63220HepG2RBM25
ABCF2ENSG00000033050.31097.97230850.503600.368402.212101.33420HepG2RBM27
ABCF2ENSG00000033050.31397.50750883.063600.6622012.1597011.17830HepG2NELFE
ABCF2ENSG00000033050.31083.327301595.96680-0.559006.687905.69090HepG2RPLP0
ABCF2ENSG00000033050.3805.88100488.778700.721308.216807.22390HepG2RPS19
ABCF2ENSG00000033050.3503.38130723.43650-0.523205.581104.71960HepG2SAFB2
ABCF2ENSG00000033050.3696.24080490.546700.505103.675302.58690HepG2SERBP1
ABCF2ENSG00000033050.31446.51120909.936900.668605.386304.42650HepG2SF3A3
ABCF2ENSG00000033050.3755.133301117.29970-0.565205.541504.57000HepG2SF3B1
ABCF2ENSG00000033050.31079.92730826.129500.386404.270503.56040HepG2SF3B4
ABCF2ENSG00000033050.3761.295201156.50290-0.603207.519406.45020HepG2SLBP
ABCF2ENSG00000033050.31147.84270843.641100.444107.183006.22220HepG2SMN1
ABCF2ENSG00000033050.31011.89570761.660800.409702.156401.32110HepG2SMNDC1
ABCF2ENSG00000033050.32011.879301665.400700.272603.614803.06560HepG2SRFBP1
ABCF2ENSG00000033050.31690.94920862.287700.9715028.5922027.42490HepG2SRSF1
ABCF2ENSG00000033050.31039.592101455.53940-0.485508.241507.14970HepG2SRSF7
ABCF2ENSG00000033050.3961.819401445.90650-0.5881011.8460010.92970HepG2SSB
ABCF2ENSG00000033050.31693.621401354.229100.322502.990402.34810HepG2SUCLG1
ABCF2ENSG00000033050.3754.076301010.10130-0.421702.708402.03790HepG2SUPV3L1
ABCF2ENSG00000033050.31000.94030775.022600.368903.599502.97530HepG2TAF15
ABCF2ENSG00000033050.3758.922701100.15700-0.535704.963304.03310HepG2TARDBP
ABCF2ENSG00000033050.3617.97490789.32770-0.353102.723002.22580HepG2TIAL1
ABCF2ENSG00000033050.3668.65960796.41650-0.252302.022001.52540HepG2TRIM56
ABCF2ENSG00000033050.31024.99180822.375900.317601.921901.38780HepG2U2AF1
ABCF2ENSG00000033050.31529.36720779.102500.9729028.1531026.54390HepG2UTP3
ABCF2ENSG00000033050.3731.19880891.40030-0.285802.721502.05490HepG2ZC3H8
ABCF2ENSG00000033050.31062.27180887.517900.259202.769302.22240HepG2ZNF622
ABCF2ENSG00000033050.32046.281103069.97270-0.5852010.552409.53870K562AGGF1
ABCF2ENSG00000033050.32232.849003373.13940-0.595209.167607.08960K562AKAP8
ABCF2ENSG00000033050.31612.590203194.37280-0.9862018.2492016.28570K562AKAP8L
ABCF2ENSG00000033050.38115.676806152.294200.399502.542301.35480K562APOBEC3C
ABCF2ENSG00000033050.33788.983105693.48970-0.587502.439801.88250K562AQR
ABCF2ENSG00000033050.32616.270503351.52820-0.357304.788803.55230K562ATP5C1
ABCF2ENSG00000033050.33118.836303884.23100-0.316603.230601.79080K562BCCIP
ABCF2ENSG00000033050.32890.836203753.89060-0.376903.331602.27590K562BCLAF1
ABCF2ENSG00000033050.32076.646002725.29720-0.392203.550602.56250K562BOP1
ABCF2ENSG00000033050.31382.176301856.61930-0.425702.346101.39290K562CCAR1
ABCF2ENSG00000033050.32055.771802897.84850-0.495305.892704.75200K562CPSF6
ABCF2ENSG00000033050.37258.223404689.014200.630207.876906.85390K562DDX47
ABCF2ENSG00000033050.32757.881503507.91770-0.347102.967002.02150K562EFTUD2
ABCF2ENSG00000033050.31514.031001884.44680-0.315704.312102.77650K562EIF2S1
ABCF2ENSG00000033050.34051.558205797.80800-0.5170012.6942011.32500K562EIF2S2
ABCF2ENSG00000033050.33499.819702183.355000.6806017.0475015.00310K562EIF3G
ABCF2ENSG00000033050.32927.299703580.59810-0.290602.855401.56730K562EXOSC5
ABCF2ENSG00000033050.33719.116604508.56480-0.277702.375001.58930K562FIP1L1
ABCF2ENSG00000033050.32088.849102948.34570-0.497205.751904.50980K562FMR1
ABCF2ENSG00000033050.31733.043102498.92530-0.528005.497204.15480K562FTO
ABCF2ENSG00000033050.35035.592301864.125201.4336081.0260078.16050K562FXR1
ABCF2ENSG00000033050.31013.221001453.97400-0.521103.608302.77590K562G3BP2
ABCF2ENSG00000033050.32019.159302766.79270-0.454504.812803.76940K562GPKOW
ABCF2ENSG00000033050.36437.458107726.31900-0.263302.661801.91980K562GRSF1
ABCF2ENSG00000033050.31622.148702550.51420-0.652903.546301.32390K562HLTF
ABCF2ENSG00000033050.31405.165302888.37560-1.039506.814904.60830K562HNRNPA2B1
ABCF2ENSG00000033050.31796.267002736.16100-0.607209.754608.68890K562HNRNPC
ABCF2ENSG00000033050.31802.176302443.22230-0.439003.592402.27520K562HNRNPF
ABCF2ENSG00000033050.33503.305002333.225700.586307.010604.96850K562HNRNPK
ABCF2ENSG00000033050.33271.271604637.46490-0.503504.582603.42860K562HNRNPU
ABCF2ENSG00000033050.32251.138903390.28360-0.590809.886408.06210K562KIF1C
ABCF2ENSG00000033050.31752.305302362.33730-0.431002.902801.94290K562KRR1
ABCF2ENSG00000033050.33081.702102455.474400.327602.623401.80500K562MAGOH
ABCF2ENSG00000033050.32464.159403245.12830-0.397204.815103.27720K562MAK16
ABCF2ENSG00000033050.33077.431502450.338100.328603.455502.40950K562MATR3
ABCF2ENSG00000033050.32261.210802700.67290-0.256202.140501.36970K562METAP2
ABCF2ENSG00000033050.33356.891903935.10150-0.229302.003101.30970K562MTPAP
ABCF2ENSG00000033050.32029.509302662.05720-0.391402.580301.73400K562NAA15
ABCF2ENSG00000033050.33126.693504372.39330-0.4838020.1032018.36070K562NSUN2
ABCF2ENSG00000033050.31504.482602527.46690-0.748403.839602.61940K562PABPN1
ABCF2ENSG00000033050.33216.340904554.51300-0.501905.224804.07970K562PCBP3
ABCF2ENSG00000033050.33320.286004588.92980-0.466903.608201.79850K562PKM
ABCF2ENSG00000033050.32898.286203493.53340-0.269502.663501.87920K562POLR2G
ABCF2ENSG00000033050.31887.629502453.20690-0.378104.288703.12690K562PSIP1
ABCF2ENSG00000033050.34807.323402385.723301.0107029.5354027.46010K562PTBP1
ABCF2ENSG00000033050.32278.970603168.46330-0.475405.340704.61850K562PUS1
ABCF2ENSG00000033050.32176.769603086.75760-0.503907.316206.38360K562RBM15
ABCF2ENSG00000033050.33258.327602406.902600.436904.338002.93490K562NELFE
ABCF2ENSG00000033050.32106.895201357.679200.633902.307401.40310K562RPS3
ABCF2ENSG00000033050.34675.513703112.613300.5869010.055108.05740K562SAFB
ABCF2ENSG00000033050.31967.849402631.09760-0.419003.313502.24710K562SF3B1
ABCF2ENSG00000033050.31945.810801512.140500.363704.144003.09240K562SF3B4
ABCF2ENSG00000033050.31617.252602819.36920-0.801803.797002.17350K562SFPQ
ABCF2ENSG00000033050.33649.775404419.99760-0.276205.296404.05170K562SRPK2
ABCF2ENSG00000033050.33883.044502338.918600.7312015.6372013.95680K562SRSF1
ABCF2ENSG00000033050.31820.096402252.18930-0.307303.598102.10710K562SSB
ABCF2ENSG00000033050.34654.540105915.37310-0.345803.310401.80100K562SSRP1
ABCF2ENSG00000033050.33833.149305410.27770-0.497205.310203.49220K562STAU1
ABCF2ENSG00000033050.31762.871903175.56260-0.849104.372202.41160K562SUPT6H
ABCF2ENSG00000033050.32521.757403305.50020-0.390403.002701.94110K562SUPV3L1
ABCF2ENSG00000033050.36042.410903504.012900.7860010.152408.57670K562SYNCRIP
ABCF2ENSG00000033050.31650.819802359.60280-0.515405.036903.74060K562TIAL1
ABCF2ENSG00000033050.32061.714102506.51410-0.281802.308001.45560K562TRIM56
ABCF2ENSG00000033050.34066.834605273.54460-0.374903.798902.09960K562TRIP6
ABCF2ENSG00000033050.34375.305805422.69440-0.309603.970702.45050K562TROVE2
ABCF2ENSG00000033050.32245.509803498.26600-0.639608.398006.54960K562UCHL5
ABCF2ENSG00000033050.33050.451304636.13010-0.603906.257205.22860K562UPF1
ABCF2ENSG00000033050.32019.561603211.96360-0.669403.702202.13830K562UTP18
ABCF2ENSG00000033050.32785.982803967.00840-0.509906.495205.12030K562WDR3
ABCF2ENSG00000033050.32831.110503561.89880-0.331302.591501.43560K562XRN2
ABCF2ENSG00000033050.33853.201806415.22540-0.735403.194302.25920K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ABCF2 is not available on ENCORE database.





6 RBPs can affect the splicing of ABCF2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEABCF2ENSG00000033050.3chr7-150911964150912185150911143150911277150912689150912818-0.076000.002080.06541excludedK562TARDBP
SEABCF2ENSG00000033050.3chr7-150911964150912168150911143150911277150912689150912818-0.058000.000000.00000excludedK562HNRNPU
A3SSABCF2ENSG00000033050.3chr7-1509119641509121851509119641509121681509126891509128180.052000.000050.01554longerK562RBM22
A3SSABCF2ENSG00000033050.3chr7-1509161491509162971509161491509162451509186631509187660.093000.000000.00000longerK562AQR
A3SSABCF2ENSG00000033050.3chr7-1509233901509236391509233901509235861509242481509242520.273000.000000.00000longerK562AQR
A3SSABCF2ENSG00000033050.3chr7-1509119641509121851509119641509121681509126891509128180.185000.000000.00000longerK562AQR
A3SSABCF2ENSG00000033050.3chr7-1509196061509198321509196061509197021509207631509209350.119000.000000.00000longerK562AQR
MXEABCF2ENSG00000033050.3chr7-1509130521509131151509151661509152771509126891509128181509156461509157360.284000.011750.061451includedHepG2U2AF2
MXEABCF2ENSG00000033050.3chr7-1509130521509131151509151661509152771509126891509128181509156461509157360.116000.002560.095941includedHepG2LARP4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ABCF2 is not avaliable on ENCORE database.