USP54

General Information

Gene Name : USP54
Gene ID : ENSG00000166348.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: USP54)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	USP54	ENSG00000166348.18	5.53	3.79	4.66	ENCSR000AEF
HepG2	USP54	ENSG00000166348.18	12.30	12.12	12.21	ENCSR985KAT
K562	USP54	ENSG00000166348.18	11.76	14.59	13.18	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for USP54 is not avaliable on ENCORE database.

Proteins bound to RNA

USP54 RNA is bound by 8 proteins.

CanvasJS.com

eCLIP assay for USP54 is not avaliable on ENCORE database.

8 proteins are bound to USP54 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	75385533	75385649	-	intron-Distal	4.35791	13.51657	HepG2	FAM120A
chr10	75385556	75385660	-	intron-Distal	4.62036	13.20532	HepG2	PRPF4
chr10	75385543	75385649	-	intron-Distal	6.03160	11.81988	K562	GTF2F1
chr10	75385375	75385482	-	5'-UTR,intron-Distal,intron-Proximal	5.00878	8.12741	HepG2	GTF2F1
chr10	75385391	75385513	-	5'-UTR,intron-Distal,intron-Proximal	4.64602	6.75874	HepG2	PRPF4
chr10	75385367	75385450	-	5'-UTR,intron-Distal,intron-Proximal	5.31334	6.73801	K562	GTF2F1
chr10	75385573	75385661	-	intron-Distal	4.92434	6.71013	HepG2	GTF2F1
chr10	75385395	75385470	-	5'-UTR,intron-Distal,intron-Proximal	3.73761	6.59813	HepG2	FAM120A
chr10	75385540	75385638	-	intron-Distal	5.00286	5.67757	HepG2	CSTF2T
chr10	75295985	75296048	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.46465	5.05356	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 16 entries

eCLIP assay for USP54 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for USP54 is not available on ENCORE database.
91 RBPs can affect the levels of USP54.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for USP54 is not available on ENCORE database.

91 RBPs can affect the gene expression of USP54 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
USP54	ENSG00000166348.13	1069.59280	437.06780	1.29100	38.83800	37.20680	HepG2	ACO1
USP54	ENSG00000166348.13	1624.94510	698.42370	1.21810	36.84340	35.37490	HepG2	RBM22
USP54	ENSG00000166348.13	832.56400	375.67720	1.14800	24.10470	22.79390	HepG2	PTBP1
USP54	ENSG00000166348.13	1869.62480	718.97930	1.37860	23.63040	21.79490	HepG2	FIP1L1
USP54	ENSG00000166348.13	419.76920	826.37030	-0.97720	15.37820	13.82090	HepG2	IGF2BP1
USP54	ENSG00000166348.13	462.84920	824.47710	-0.83290	14.48540	13.11190	HepG2	SRSF7
USP54	ENSG00000166348.13	299.22250	674.44710	-1.17250	14.50530	13.07880	HepG2	CPSF6
USP54	ENSG00000166348.13	875.78580	502.57440	0.80110	14.15610	12.96140	HepG2	UTP3
USP54	ENSG00000166348.13	311.68790	669.43880	-1.10280	13.60460	11.89270	HepG2	EIF4G2
USP54	ENSG00000166348.13	245.61660	545.47920	-1.15110	13.09270	11.85900	HepG2	HNRNPA1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 95 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for USP54 is not available on ENCORE database.

5 RBPs can affect the splicing of USP54 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	USP54	ENSG00000166348.13	chr10	-	75264607	75264748			75260412	75260596	75265065	75265184	-0.59200	0.00013	0.01264	excluded	HepG2	NCBP2
SE	USP54	ENSG00000166348.13	chr10	-	75294357	75294528			75290461	75290593	75296026	75296195	0.47900	0.00042	0.07930	included	K562	METAP2
SE	USP54	ENSG00000166348.13	chr10	-	75264607	75264748			75260412	75260596	75265065	75265184	-0.48300	0.00083	0.06677	excluded	K562	XRCC6
SE	USP54	ENSG00000166348.13	chr10	-	75294357	75294528			75290461	75290593	75296026	75296195	-0.60600	0.00203	0.02555	excluded	HepG2	U2AF2
MXE	USP54	ENSG00000166348.13	chr10	-	75301661	75301727	75302560	75302643	75301390	75301496	75302775	75302889	-0.14000	0.01039	0.06533	2included	K562	AQR
A3SS	USP54	ENSG00000166348.13	chr10	-	75331178	75331311			75331178	75331271	75335269	75335462	0.17800	0.01158	0.05986	longer	K562	AQR

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

USP54

General Information

Functions

Localization

Domains (AlphaFold: USP54)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for USP54 is not avaliable on ENCORE database.

8 proteins are bound to USP54 RNA:

eCLIP assay for USP54 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for USP54 is not available on ENCORE database.

91 RBPs can affect the gene expression of USP54 :

The Knockdown/knockout RNA-Seq assay for USP54 is not available on ENCORE database.

5 RBPs can affect the splicing of USP54 :

The Knockdown/knockout RNA-Seq assay for USP54 is not avaliable on ENCORE database.