UBE2S

General Information

Gene Name       : UBE2S
Gene ID             : ENSG00000108106.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: UBE2S)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UBE2SENSG00000108106.1313.0071.7742.38ENCSR000AEF
HepG2UBE2SENSG00000108106.1338.7519.2128.98ENCSR985KAT
K562UBE2SENSG00000108106.13198.41162.78180.59ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UBE2S is not avaliable on ENCORE database.



Proteins bound to RNA
  • UBE2S RNA is bound by 17 proteins.  







eCLIP assay for UBE2S is not avaliable on ENCORE database.





17 proteins are bound to UBE2S RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr195591311555913178-3'-UTR,CDS,intron-Distal4.2154126.43421K562SF3B4
chr195591905955919130-5'-UTR,intron-Distal,intron-Proximal3.4464315.69499K562DDX55
chr195591906155919131-5'-UTR,intron-Distal,intron-Proximal3.4123918.22515K562DDX3X
chr195591907955919136-5'-UTR,intron-Distal,intron-Proximal3.032809.84655K562RPS3
chr195591899655919053-5'-UTR,intron-Distal3.7940722.04902K562GEMIN5
chr195591906655919130-5'-UTR,intron-Distal,intron-Proximal3.2002815.52811K562GEMIN5
chr195591900255919056-5'-UTR,intron-Distal4.927206.05264HepG2DDX3X
chr195591900655919036-5'-UTR,intron-Distal3.138309.93776K562PABPC4
chr195591906055919126-5'-UTR,intron-Distal,intron-Proximal3.8964713.92864K562DROSHA
chr195591905755919126-5'-UTR,intron-Distal,intron-Proximal3.651967.31899HepG2DDX3X
chr195591895555918977-5'-UTR,CDS,intron-Distal4.005565.00225K562GEMIN5
chr195591906955919133-5'-UTR,intron-Distal,intron-Proximal4.0249356.34579K562PABPC4
chr195591828555918328-CDS,intron-Distal3.6441811.76933K562PABPC4
chr195591583155915843-CDS,intron-Distal,intron-Proximal3.5042628.58858K562YBX3
chr195591583355915905-CDS,intron-Distal,intron-Proximal4.0369310.42818K562SF3B4
chr195591584355915846-CDS,intron-Distal,intron-Proximal3.5060328.58858K562YBX3
chr195591289455912970-CDS,intron-Distal,intron-Proximal3.993763.15159HepG2LARP4
chr195591582355915831-CDS,intron-Distal,intron-Proximal3.5246415.12147K562YBX3
chr195591818255918185-CDS,intron-Distal,intron-Proximal3.3361126.93550K562YBX3
chr195591828255918327-CDS,intron-Distal4.375425.48759K562ZNF800
chr195591582055915823-CDS,intron-Distal,intron-Proximal3.8082315.95794K562YBX3
chr195591581655915904-CDS,intron-Distal,intron-Proximal3.395793.93669K562AQR
chr195591828855918325-CDS,intron-Distal3.116514.70792K562GEMIN5
chr195591287955912992-CDS,intron-Distal,intron-Proximal3.0592812.44848K562DDX6
chr195591886055918916-intron-Distal4.1633410.97743K562BUD13
chr195591780755917923-intron-Distal3.883556.93263K562GTF2F1
chr195591881555918885-intron-Distal4.091958.82110K562PRPF8
chr195591879255918851-intron-Distal4.2689816.99008K562EFTUD2
chr195591885155918933-intron-Distal5.5653528.60836K562EFTUD2
chr195591481655914896-intron-Distal4.8908313.29492K562PTBP1
chr195591880555918868-intron-Distal3.1802611.62238K562AQR
chr195591560955915648-intron-Distal,intron-Proximal4.1850614.24262K562AQR
chr195591891055918955-intron-Distal3.0498510.60396K562AQR
chr195591879855918910-intron-Distal3.317396.71503K562SF3B4
chr195591812555918169-intron-Distal,intron-Proximal3.550815.85206K562EFTUD2
chr195591811655918183-intron-Distal,intron-Proximal3.6033111.23713K562AQR
chr195591564855915656-intron-Distal,intron-Proximal3.9464512.50830K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UBE2S is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UBE2S is not available on ENCORE database.

  • 109 RBPs can affect the levels of UBE2S.  








The Knockdown/knockout RNA-Seq assay for UBE2S is not available on ENCORE database.





109 RBPs can affect the gene expression of UBE2S :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UBE2SENSG00000108106.9348.27800598.24520-0.780505.651204.35770HepG2ABCF1
UBE2SENSG00000108106.9459.81460281.695900.706804.108003.47740HepG2AKAP1
UBE2SENSG00000108106.9157.82260233.07410-0.562502.261601.54770HepG2ASCC1
UBE2SENSG00000108106.9395.06270559.58410-0.502304.328603.50380HepG2AUH
UBE2SENSG00000108106.9268.19630381.58020-0.508701.943801.43460HepG2BOP1
UBE2SENSG00000108106.9260.25930448.35090-0.784706.419804.60120HepG2BUD13
UBE2SENSG00000108106.9159.35730259.95750-0.706003.166002.34590HepG2CALR
UBE2SENSG00000108106.9131.41290221.43830-0.752803.373102.52440HepG2CIRBP
UBE2SENSG00000108106.9229.34800402.19190-0.810308.755307.70120HepG2CKAP4
UBE2SENSG00000108106.9210.25010350.29130-0.736403.221702.48570HepG2CPSF6
UBE2SENSG00000108106.969.80640147.08660-1.075202.697801.36660HepG2CSTF2T
UBE2SENSG00000108106.992.11570158.05810-0.778902.578501.91990HepG2DDX21
UBE2SENSG00000108106.963.61870154.92070-1.284004.041502.92400HepG2DDX24
UBE2SENSG00000108106.9172.95950397.78820-1.201604.796803.52240HepG2DDX59
UBE2SENSG00000108106.9236.72660384.88440-0.701205.868904.94910HepG2DKC1
UBE2SENSG00000108106.974.05620145.75820-0.976902.432801.39960HepG2AGO1
UBE2SENSG00000108106.9142.56290246.23440-0.788403.973103.21170HepG2EIF4A3
UBE2SENSG00000108106.9177.09260342.95380-0.953507.473506.21870HepG2EIF4G1
UBE2SENSG00000108106.9292.93490518.33820-0.823305.901604.36210HepG2ESF1
UBE2SENSG00000108106.9335.00870642.48600-0.9395013.9859012.80060HepG2ETF1
UBE2SENSG00000108106.981.17210150.75430-0.893102.489201.40100HepG2FASTKD2
UBE2SENSG00000108106.9408.94660604.11830-0.562902.681301.92280HepG2FIP1L1
UBE2SENSG00000108106.995.84190190.38660-0.990204.890003.23960HepG2FKBP4
UBE2SENSG00000108106.989.91250350.93350-1.9646010.447308.51150HepG2FTO
UBE2SENSG00000108106.9150.33840265.64540-0.821304.943403.90570HepG2FUBP3
UBE2SENSG00000108106.9483.55390248.481300.960408.291907.14390HepG2FXR1
UBE2SENSG00000108106.9167.55020397.02750-1.244606.571105.61220HepG2GPKOW
UBE2SENSG00000108106.9115.64870219.06910-0.921604.867404.04290HepG2HNRNPA1
UBE2SENSG00000108106.9140.51250378.89560-1.431106.738105.80460HepG2HNRNPLL
UBE2SENSG00000108106.9276.57380416.91070-0.592103.721402.63300HepG2HNRNPM
UBE2SENSG00000108106.9154.42410234.27140-0.601302.451001.81080HepG2IGF2BP2
UBE2SENSG00000108106.9373.09220249.952800.577802.802902.16830HepG2MATR3
UBE2SENSG00000108106.9314.04960489.08470-0.639104.653003.62450HepG2MSI2
UBE2SENSG00000108106.9208.53060386.54450-0.890403.848402.69400HepG2MTPAP
UBE2SENSG00000108106.9217.45830410.65020-0.917208.016805.99280HepG2NAA15
UBE2SENSG00000108106.9138.08900336.00340-1.282906.031704.95210HepG2NSUN2
UBE2SENSG00000108106.9141.00960227.81290-0.692103.141202.37460HepG2PABPC4
UBE2SENSG00000108106.9169.81270325.69320-0.939608.636207.37430HepG2PRPF4
UBE2SENSG00000108106.9105.01120176.40670-0.748402.981302.14480HepG2PRPF8
UBE2SENSG00000108106.9244.52080329.08750-0.428502.249601.70370HepG2PUF60
UBE2SENSG00000108106.9647.39060349.076700.8910010.686709.41690HepG2PUM2
UBE2SENSG00000108106.9329.26920409.76270-0.315501.886801.35810HepG2PUS1
UBE2SENSG00000108106.9386.97050530.99660-0.456503.314602.38520HepG2RBM15
UBE2SENSG00000108106.9120.06420225.43240-0.908902.605001.94790HepG2RBM25
UBE2SENSG00000108106.9382.81170201.877400.923105.495603.36510HepG2RBM47
UBE2SENSG00000108106.9162.80710445.17720-1.4512015.5294014.16440HepG2RPLP0
UBE2SENSG00000108106.993.94980174.49740-0.893203.633802.74970HepG2RRP9
UBE2SENSG00000108106.9320.74630215.565200.573201.931001.37640HepG2SAFB2
UBE2SENSG00000108106.9330.82620197.803500.741902.934101.58520HepG2SART3
UBE2SENSG00000108106.9219.92130375.00010-0.769903.562502.77030HepG2SF3B1
UBE2SENSG00000108106.9243.98370315.49440-0.370801.984201.37220HepG2SLBP
UBE2SENSG00000108106.9196.95290417.26470-1.083105.375504.27600HepG2SNRNP70
UBE2SENSG00000108106.9404.09840606.51590-0.585806.168605.50230HepG2SRFBP1
UBE2SENSG00000108106.9121.90320526.59380-2.1110045.1688043.70540HepG2SSB
UBE2SENSG00000108106.996.98520227.69980-1.231307.156206.14950HepG2SUPV3L1
UBE2SENSG00000108106.9217.01040369.45180-0.767603.326202.53920HepG2TARDBP
UBE2SENSG00000108106.998.10360235.24010-1.261805.616304.95320HepG2TIAL1
UBE2SENSG00000108106.9480.50920340.240300.497902.289701.53370HepG2UBE2L3
UBE2SENSG00000108106.9201.92170305.53470-0.597504.063303.24160HepG2UPF1
UBE2SENSG00000108106.9284.56220134.976201.075902.900601.81610HepG2XRCC6
UBE2SENSG00000108106.9190.83250321.40600-0.752106.171605.23060HepG2ZC3H8
UBE2SENSG00000108106.9228.83830336.02760-0.554304.139203.50710HepG2ZNF622
UBE2SENSG00000108106.913731.144904842.660301.5035075.0460072.16910K562AGGF1
UBE2SENSG00000108106.93156.072402637.472400.258902.890901.35080K562AKAP1
UBE2SENSG00000108106.99955.641905322.019800.903407.321105.52500K562AKAP8
UBE2SENSG00000108106.911834.978105039.171901.231707.265206.16160K562AKAP8L
UBE2SENSG00000108106.96828.417404234.642000.689205.987405.18030K562AQR
UBE2SENSG00000108106.98839.206405287.615000.7412010.650708.72030K562ATP5C1
UBE2SENSG00000108106.92278.005801804.560900.336002.895401.81340K562CCAR1
UBE2SENSG00000108106.93577.546102743.407100.382902.913001.42770K562CKAP4
UBE2SENSG00000108106.91727.926901289.900200.421702.457001.46860K562CSTF2
UBE2SENSG00000108106.97647.054605681.778900.428503.515001.85590K562DDX19B
UBE2SENSG00000108106.94500.830703223.646000.481404.322502.78660K562DDX21
UBE2SENSG00000108106.92034.280201490.675700.448507.712605.50000K562DDX27
UBE2SENSG00000108106.94133.796603468.801000.252902.843002.18270K562DDX47
UBE2SENSG00000108106.93320.523702709.550100.293303.838402.22270K562DDX6
UBE2SENSG00000108106.97410.938905421.479300.450903.424802.43630K562DKC1
UBE2SENSG00000108106.91177.32940699.875100.7502012.0417010.36040K562EIF3G
UBE2SENSG00000108106.93689.843502514.457000.5532011.550809.07140K562EIF4B
UBE2SENSG00000108106.93526.357902437.231400.5328011.142908.16600K562EWSR1
UBE2SENSG00000108106.93501.100402132.606300.7151012.0364010.14830K562FIP1L1
UBE2SENSG00000108106.91899.324301241.917700.612803.965002.22400K562G3BP1
UBE2SENSG00000108106.981.28520593.25490-2.8676010.889309.29940K562G3BP2
UBE2SENSG00000108106.96877.179303965.033100.7944017.1500015.22790K562GRSF1
UBE2SENSG00000108106.97985.426704811.798600.730704.018202.46220K562HNRNPA2B1
UBE2SENSG00000108106.92558.332201754.234700.544305.381104.02890K562HNRNPM
UBE2SENSG00000108106.93940.436002891.171300.446605.235504.15750K562HSPD1
UBE2SENSG00000108106.92913.493901299.849501.164302.975301.90020K562IGF2BP2
UBE2SENSG00000108106.92175.786501321.741600.719006.251104.34980K562IGF2BP3
UBE2SENSG00000108106.98252.268205347.244800.625907.460005.94090K562KIF1C
UBE2SENSG00000108106.91915.697001365.147200.488702.809401.96290K562MAGOH
UBE2SENSG00000108106.99084.985405119.096300.827507.830705.64800K562MAK16
UBE2SENSG00000108106.98627.256305990.345200.526205.362304.01120K562MBNL1
UBE2SENSG00000108106.92140.602701587.552400.431104.876703.69390K562METAP2
UBE2SENSG00000108106.96131.487004198.848800.546103.330502.34540K562NAA15
UBE2SENSG00000108106.99449.414504209.933801.166309.178107.00730K562PABPN1
UBE2SENSG00000108106.92690.608601334.872701.0111017.3577014.21480K562PCBP1
UBE2SENSG00000108106.94507.822902421.125500.8967010.637208.72870K562PPIG
UBE2SENSG00000108106.98620.244805006.099000.783904.026102.14170K562PPP1R8
UBE2SENSG00000108106.92354.736001326.396600.8280017.5123015.91040K562PTBP1
UBE2SENSG00000108106.914890.517304996.300801.5754017.9157016.56950K562PUS1
UBE2SENSG00000108106.91160.79520663.103200.807707.808504.81290K562QKI
UBE2SENSG00000108106.910996.145504869.116201.1752017.8871016.35190K562RBM15
UBE2SENSG00000108106.92269.801801271.340500.836103.806802.80900K562RBM22
UBE2SENSG00000108106.9927.24740689.241000.427804.728602.65800K562RPS10
UBE2SENSG00000108106.96866.105303850.652000.834304.259902.67720K562SF1
UBE2SENSG00000108106.93079.880004082.91110-0.406702.771001.95580K562SF3A3
UBE2SENSG00000108106.91187.25750616.127300.946208.647107.09180K562SF3B4
UBE2SENSG00000108106.92715.996901909.490600.508202.834301.79420K562SRFBP1
UBE2SENSG00000108106.92340.282401300.416800.8476011.8869010.42590K562SRSF1
UBE2SENSG00000108106.93871.869502454.310000.6576012.3839010.02440K562SRSF4
UBE2SENSG00000108106.92414.407501228.407800.974804.706403.27120K562SRSF5
UBE2SENSG00000108106.91850.265602797.91500-0.596607.647805.31530K562SSRP1
UBE2SENSG00000108106.9232.17780582.28650-1.326503.237401.60900K562TAF15
UBE2SENSG00000108106.92625.301301315.878400.996403.212202.45030K562TARDBP
UBE2SENSG00000108106.92816.339001269.373301.149608.737307.16910K562TIA1
UBE2SENSG00000108106.92932.766601246.173001.234707.517905.50370K562TRA2A
UBE2SENSG00000108106.95635.955604521.420200.317805.886704.00410K562TROVE2
UBE2SENSG00000108106.9322.41150593.31060-0.879903.439702.54660K562U2AF2
UBE2SENSG00000108106.93430.323904386.69530-0.354803.124302.36250K562UPF1
UBE2SENSG00000108106.99596.871205066.916900.921407.248004.88130K562UTP18
UBE2SENSG00000108106.92968.647003903.58920-0.395003.294202.37820K562WDR43
UBE2SENSG00000108106.95988.936604770.250400.328103.400302.42890K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UBE2S is not available on ENCORE database.





2 RBPs can affect the splicing of UBE2S :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUBE2SENSG00000108106.9chr19-5591542855915515559129465591313055915655559158460.057000.000020.00205includedHepG2SFPQ
A3SSUBE2SENSG00000108106.9chr19-5591308155913318559130815591313055915655559158790.056000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for UBE2S is not avaliable on ENCORE database.