TRAM1

General Information

Gene Name       : TRAM1
Gene ID             : ENSG00000067167.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRAM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRAM1ENSG00000067167.775.6958.5867.13ENCSR000AEF
HepG2TRAM1ENSG00000067167.787.80136.39112.09ENCSR985KAT
K562TRAM1ENSG00000067167.749.0062.0355.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRAM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRAM1 RNA is bound by 17 proteins.  







eCLIP assay for TRAM1 is not avaliable on ENCORE database.





17 proteins are bound to TRAM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr87148585771485957-3'-UTR,intron-Distal3.109537.73791K562TIA1
chr87148699071487062-3'-UTR,intron-Distal,intron-Proximal3.938813.44480HepG2TIA1
chr87148585071485962-3'-UTR,intron-Distal4.4277120.69836K562IGF2BP1
chr87148586371485961-3'-UTR,intron-Distal4.396194.25353HepG2TIA1
chr87148575571485819-3'-UTR,intron-Distal4.220498.45080K562IGF2BP1
chr87151224671512319-5'-UTR,CDS,intron-Distal,intron-Proximal3.524026.11414K562BUD13
chr87152056471520613-5'-UTR,intron-Distal,intron-Proximal4.3127940.35376HepG2DDX3X
chr87152031471520350-5'-UTR,CDS,intron-Distal3.396769.16455HepG2DDX3X
chr87152047771520564-5'-UTR,intron-Distal4.2799058.70841HepG2DDX3X
chr87152030571520368-5'-UTR,CDS,intron-Distal,intron-Proximal3.558665.14253HepG2GRWD1
chr87152024971520358-5'-UTR,CDS,intron-Distal,intron-Proximal3.2321414.71704HepG2PRPF8
chr87152057271520612-5'-UTR,intron-Distal,intron-Proximal3.791323.91339HepG2RPS3
chr87152041871520477-5'-UTR,CDS,intron-Distal,intron-Proximal4.3316336.29875HepG2DDX3X
chr87151982171519919-5'-UTR,intron-Distal3.924625.09764HepG2NKRF
chr87152042171520572-5'-UTR,CDS,intron-Distal,intron-Proximal3.1933612.75419HepG2RPS3
chr87149915171499179-CDS,intron-Distal3.482204.38503K562SND1
chr87149543871495496-CDS,intron-Distal3.616954.34898HepG2IGF2BP1
chr87149553371495557-CDS,intron-Distal4.334954.35919HepG2SND1
chr87150849871508532-CDS,intron-Distal3.955983.57526HepG2IGF2BP1
chr87149940671499412-CDS,intron-Distal,intron-Proximal3.734533.10157K562IGF2BP1
chr87152026571520321-CDS,intron-Distal,intron-Proximal3.751115.25185K562PRPF8
chr87149591571495976-CDS,intron-Distal,intron-Proximal3.373957.04378HepG2SND1
chr87149547171495500-CDS,intron-Distal5.1164320.93432HepG2SND1
chr87150853271508556-CDS,intron-Distal3.129033.77853HepG2IGF2BP1
chr87149550871495557-CDS,intron-Distal4.601273.98716K562IGF2BP1
chr87149543971495495-CDS,intron-Distal4.252713.87091K562IGF2BP2
chr87149544371495495-CDS,intron-Distal3.626953.57974K562IGF2BP1
chr87149542271495471-CDS,intron-Distal5.0702228.22880HepG2SND1
chr87149913771499178-CDS,intron-Distal4.860238.11065K562IGF2BP1
chr87150851571508542-CDS,intron-Distal3.650607.11150K562SND1
chr87149591371496009-CDS,intron-Distal,intron-Proximal3.5162213.34779K562SND1
chr87149934171499410-CDS,intron-Distal3.531158.11686K562SND1
chr87151017371510189-CDS,intron-Distal3.205053.69775K562YBX3
chr87150674071506805-CDS,intron-Distal,intron-Proximal4.582816.13324HepG2IGF2BP1
chr87149588471495913-CDS,intron-Distal,intron-Proximal3.897234.98210K562SND1
chr87149934071499382-CDS,intron-Distal,intron-Proximal4.5559711.01264K562IGF2BP1
chr87150849771508557-CDS,intron-Distal,intron-Proximal3.389214.94895K562IGF2BP1
chr87149543471495499-CDS,intron-Distal4.2805912.58006K562SND1
chr87150674071506768-CDS,intron-Distal,intron-Proximal4.165265.23915K562IGF2BP1
chr87150729971507344-intron-Distal4.227573.77802HepG2U2AF2
chr87150805171508190-intron-Distal4.618499.78100HepG2PTBP1
chr87149295971492990-intron-Distal3.614774.61337K562EXOSC5
chr87150811971508243-intron-Distal5.504287.41017K562PTBP1
chr87151232471512372-intron-Distal,intron-Proximal4.419425.16342K562SF3B4
chr87149567471495764-intron-Distal3.414823.57533K562KHSRP
chr87149878571498873-intron-Distal5.7843113.98859K562EXOSC5
chr87148956771489672-intron-Distal3.894125.97419K562RBFOX2
chr87150803771508086-intron-Distal3.100163.42396HepG2U2AF2
chr87150836371508432-intron-Distal,intron-Proximal4.984866.39049HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRAM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRAM1 is not available on ENCORE database.

  • 109 RBPs can affect the levels of TRAM1.  








The Knockdown/knockout RNA-Seq assay for TRAM1 is not available on ENCORE database.





109 RBPs can affect the gene expression of TRAM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRAM1ENSG00000067167.31814.904803643.05530-1.0053039.0115037.37710HepG2ACO1
TRAM1ENSG00000067167.32958.614503925.88120-0.408102.919601.89650HepG2ADAR
TRAM1ENSG00000067167.33002.185206157.99030-1.0364016.8810015.67840HepG2AKAP1
TRAM1ENSG00000067167.34876.579903660.488400.413704.397703.44580HepG2AKAP8L
TRAM1ENSG00000067167.35202.049404484.921000.213902.083501.47220HepG2AUH
TRAM1ENSG00000067167.32387.322503499.44270-0.551704.473603.28170HepG2BCCIP
TRAM1ENSG00000067167.34808.406607553.45290-0.651604.709303.95450HepG2BOP1
TRAM1ENSG00000067167.37559.843305725.368700.400902.193101.50110HepG2CALR
TRAM1ENSG00000067167.34126.264804724.21470-0.195202.516901.89870HepG2CELF1
TRAM1ENSG00000067167.32886.174503369.47950-0.223403.326302.42090HepG2DDX19B
TRAM1ENSG00000067167.32495.176904031.52230-0.6922019.0545016.56830HepG2DDX1
TRAM1ENSG00000067167.33749.967202870.960400.385202.459301.81560HepG2DDX21
TRAM1ENSG00000067167.34212.341702807.221000.585407.495006.00380HepG2DDX24
TRAM1ENSG00000067167.34520.833205899.09420-0.383903.327802.64990HepG2DDX3X
TRAM1ENSG00000067167.33377.585205066.96030-0.585105.935905.05970HepG2DDX6
TRAM1ENSG00000067167.32591.084303918.35260-0.5967023.2576021.53190HepG2DNAJC2
TRAM1ENSG00000067167.33500.529402641.848200.405902.664701.58150HepG2AGO1
TRAM1ENSG00000067167.33832.257804871.47190-0.346202.807002.20890HepG2EIF2S1
TRAM1ENSG00000067167.33721.537602919.068800.350302.811601.90260HepG2EIF3D
TRAM1ENSG00000067167.35831.183805148.977000.179401.828601.31900HepG2ETF1
TRAM1ENSG00000067167.31681.032502734.74980-0.702104.731103.29640HepG2FASTKD2
TRAM1ENSG00000067167.33827.031602863.910800.418104.226002.68240HepG2FKBP4
TRAM1ENSG00000067167.33013.922105431.30710-0.8497014.1910012.74530HepG2FXR1
TRAM1ENSG00000067167.33530.733805038.70330-0.513105.035904.15060HepG2G3BP1
TRAM1ENSG00000067167.34725.518403042.838000.635003.553902.39110HepG2GNB2L1
TRAM1ENSG00000067167.310457.815507861.706300.411603.719502.98670HepG2GPKOW
TRAM1ENSG00000067167.32858.473203478.30620-0.283102.697401.73060HepG2HDGF
TRAM1ENSG00000067167.35915.222704668.683200.341306.204004.90020HepG2HNRNPA2B1
TRAM1ENSG00000067167.33431.118404439.27650-0.371604.118503.28530HepG2HNRNPC
TRAM1ENSG00000067167.33888.974304989.81900-0.359603.118302.36000HepG2HNRNPF
TRAM1ENSG00000067167.34033.041805101.28080-0.339003.195802.44700HepG2HNRNPK
TRAM1ENSG00000067167.33103.188404628.04930-0.5767015.8512014.35300HepG2HNRNPL
TRAM1ENSG00000067167.32817.282304409.92290-0.6464022.1151020.51640HepG2HNRNPU
TRAM1ENSG00000067167.33941.879604913.60740-0.317902.964602.21740HepG2IGF2BP1
TRAM1ENSG00000067167.33608.301204504.58140-0.320108.452407.23980HepG2ILF2
TRAM1ENSG00000067167.32036.565703262.86700-0.680006.763204.79630HepG2KHDRBS1
TRAM1ENSG00000067167.32372.335103330.44650-0.4894011.682109.75020HepG2KIF1C
TRAM1ENSG00000067167.33801.089503130.333000.280002.763601.55140HepG2LIN28B
TRAM1ENSG00000067167.32434.275705463.72340-1.1664021.7672020.13310HepG2MATR3
TRAM1ENSG00000067167.37589.471204447.669300.7708014.5246012.82760HepG2MSI2
TRAM1ENSG00000067167.33398.630805592.51760-0.718509.531408.39620HepG2NCBP2
TRAM1ENSG00000067167.31949.348305037.65960-1.3698044.0938041.46080HepG2NOL12
TRAM1ENSG00000067167.38611.658806651.932900.372402.354301.66200HepG2NSUN2
TRAM1ENSG00000067167.34929.581403130.944500.654804.184103.07740HepG2PABPC1
TRAM1ENSG00000067167.33639.543004980.92840-0.452704.308303.42050HepG2PABPC4
TRAM1ENSG00000067167.33552.054804365.00400-0.297303.546302.59850HepG2PARN
TRAM1ENSG00000067167.33571.454104651.40320-0.381206.217105.36320HepG2PCBP1
TRAM1ENSG00000067167.33120.540803933.28980-0.333905.038104.07200HepG2PPIL4
TRAM1ENSG00000067167.33874.829102654.918800.545406.838605.63280HepG2PRPF8
TRAM1ENSG00000067167.33375.082304732.78720-0.4878012.4363011.44180HepG2PTBP1
TRAM1ENSG00000067167.33636.272404808.69500-0.403205.376104.58020HepG2PUF60
TRAM1ENSG00000067167.32386.953605104.41710-1.0966040.7912039.06270HepG2PUM1
TRAM1ENSG00000067167.32804.176703710.74390-0.404109.574708.54450HepG2PUS1
TRAM1ENSG00000067167.32767.000005126.12910-0.8895022.5222020.98810HepG2QKI
TRAM1ENSG00000067167.35601.150703703.673400.596703.616502.81340HepG2RAVER1
TRAM1ENSG00000067167.34551.049105267.29520-0.210902.876402.32710HepG2NELFE
TRAM1ENSG00000067167.33380.410204905.48420-0.5372012.3434011.18140HepG2RECQL
TRAM1ENSG00000067167.32644.548303636.92610-0.459702.593101.67730HepG2RPS10
TRAM1ENSG00000067167.32384.478003314.66460-0.475204.084703.12100HepG2RPS2
TRAM1ENSG00000067167.35369.371203927.200900.451206.690405.75350HepG2SAFB2
TRAM1ENSG00000067167.33977.958402850.874000.480505.568904.24900HepG2SERBP1
TRAM1ENSG00000067167.34181.822604927.78200-0.236803.735303.06340HepG2SF3B4
TRAM1ENSG00000067167.33656.455104579.72850-0.324808.079007.07130HepG2SMN1
TRAM1ENSG00000067167.311902.993608263.018800.526502.044501.37720HepG2SNRNP70
TRAM1ENSG00000067167.36686.622205143.399000.378507.148306.47150HepG2SRSF1
TRAM1ENSG00000067167.33864.950904902.12420-0.343002.671001.98730HepG2SRSF7
TRAM1ENSG00000067167.36828.388804220.645800.6940022.9959021.83380HepG2SSB
TRAM1ENSG00000067167.34870.749303460.990900.492902.915801.67950HepG2SUB1
TRAM1ENSG00000067167.34153.936005399.57840-0.378408.925907.91610HepG2SUCLG1
TRAM1ENSG00000067167.34773.936503425.231700.478905.145004.26780HepG2SUPV3L1
TRAM1ENSG00000067167.33317.743804248.04230-0.356604.616603.54360HepG2TIA1
TRAM1ENSG00000067167.33425.339304284.87010-0.323004.183303.59580HepG2TIAL1
TRAM1ENSG00000067167.31651.915502319.67080-0.489803.715801.91270HepG2TROVE2
TRAM1ENSG00000067167.36392.910204699.967400.443703.650002.93250HepG2U2AF1
TRAM1ENSG00000067167.36327.805405447.094800.216103.583102.80520HepG2UPF1
TRAM1ENSG00000067167.34646.921205258.96080-0.178502.507901.93220HepG2UTP3
TRAM1ENSG00000067167.31713.308403371.75770-0.9767013.4188011.84100HepG2XRN2
TRAM1ENSG00000067167.33152.524704048.92430-0.361007.222106.36860K562AGGF1
TRAM1ENSG00000067167.31514.225802067.14460-0.449107.505905.03570K562AKAP1
TRAM1ENSG00000067167.35121.229904420.498200.212202.417301.56810K562ATP5C1
TRAM1ENSG00000067167.31603.025301971.35250-0.298403.878602.72720K562BCLAF1
TRAM1ENSG00000067167.34031.271503180.547100.341902.682301.42470K562CIRBP
TRAM1ENSG00000067167.34301.575205783.18530-0.427002.280701.33400K562CNOT7
TRAM1ENSG00000067167.34031.853204847.64360-0.265803.870402.55460K562CPEB4
TRAM1ENSG00000067167.31199.256001495.56420-0.318603.095701.97200K562CSTF2
TRAM1ENSG00000067167.32166.898802819.34300-0.379706.145104.30350K562DDX21
TRAM1ENSG00000067167.31516.799202094.44210-0.465505.930304.33580K562DDX3X
TRAM1ENSG00000067167.36020.812805015.911600.263304.419003.62090K562DDX47
TRAM1ENSG00000067167.35930.319604533.668200.387307.291405.75710K562DKC1
TRAM1ENSG00000067167.31984.068201532.360300.372603.175501.73330K562DNAJC21
TRAM1ENSG00000067167.31157.335601714.39130-0.566904.091702.50210K562EEF2
TRAM1ENSG00000067167.33811.915702904.895700.391902.207101.55400K562EIF2S2
TRAM1ENSG00000067167.31416.699101909.97030-0.431003.063301.68710K562EWSR1
TRAM1ENSG00000067167.31754.296702514.47750-0.519405.575103.21390K562FASTKD2
TRAM1ENSG00000067167.33946.225202519.956300.647003.310302.52360K562G3BP2
TRAM1ENSG00000067167.31959.865802392.84480-0.288002.764501.69200K562HNRNPA1
TRAM1ENSG00000067167.31804.397902591.67300-0.522402.781902.18320K562HNRNPC
TRAM1ENSG00000067167.33838.527302964.254700.372803.267301.91260K562HNRNPK
TRAM1ENSG00000067167.37428.088505278.601800.492706.261905.07560K562HSPD1
TRAM1ENSG00000067167.32297.572702966.17090-0.368502.490901.53430K562IGF2BP2
TRAM1ENSG00000067167.35976.249505008.842600.254702.223601.42320K562MBNL1
TRAM1ENSG00000067167.33559.505404357.45060-0.291802.444001.62500K562METAP2
TRAM1ENSG00000067167.32797.055303328.60710-0.251003.711102.78540K562MTPAP
TRAM1ENSG00000067167.32744.088403698.36180-0.4306014.7824013.24770K562NSUN2
TRAM1ENSG00000067167.32479.012004498.86310-0.859805.193903.71960K562PABPN1
TRAM1ENSG00000067167.33486.141904419.19630-0.342202.730801.91570K562PPIG
TRAM1ENSG00000067167.32322.087601611.997500.526505.975804.87240K562PRPF8
TRAM1ENSG00000067167.32335.414203029.97290-0.375603.075802.37960K562PTBP1
TRAM1ENSG00000067167.37918.420505181.233000.6118010.443608.84510K562PUF60
TRAM1ENSG00000067167.33460.695404178.32660-0.271902.430901.91470K562PUS1
TRAM1ENSG00000067167.32235.025902906.16960-0.378802.399201.62050K562RBM22
TRAM1ENSG00000067167.32004.030903058.09450-0.609705.783404.12180K562NELFE
TRAM1ENSG00000067167.31863.573802314.64210-0.312703.816701.97080K562RPS10
TRAM1ENSG00000067167.33183.603601642.122000.955008.131606.71630K562RPS19
TRAM1ENSG00000067167.32911.243803649.36840-0.326002.451801.68090K562SF3A3
TRAM1ENSG00000067167.32977.113805016.93640-0.752903.729202.12840K562SFPQ
TRAM1ENSG00000067167.32930.094303738.85940-0.351706.415305.05940K562SRPK2
TRAM1ENSG00000067167.32865.226502326.108500.300603.364501.68240K562SRSF9
TRAM1ENSG00000067167.32623.258102049.890800.355704.194403.17830K562SYNCRIP
TRAM1ENSG00000067167.33230.205902444.185800.402203.219302.02250K562U2AF1
TRAM1ENSG00000067167.33312.321002523.811600.392105.448004.32540K562U2AF2
TRAM1ENSG00000067167.34518.838203921.453000.204502.941902.20120K562UPF1
TRAM1ENSG00000067167.32842.267503355.46100-0.239502.107501.34500K562WDR3
TRAM1ENSG00000067167.33897.253903489.307500.159402.040701.30600K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRAM1 is not available on ENCORE database.





2 RBPs can affect the splicing of TRAM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETRAM1ENSG00000067167.3chr8-715103687151049071510129715102467151225371512317-0.051000.000000.00003excludedK562AQR
A3SSTRAM1ENSG00000067167.3chr8-7150674071506853715067407150682571508497715085560.123000.000000.00000longerK562AQR
A3SSTRAM1ENSG00000067167.3chr8-714958847149609771495884714960577149912971499234-0.791000.010110.05339shorterK562AQR
MXETRAM1ENSG00000067167.3chr8-7151012971510246715103687151049071508497715085567151225371512317-0.099000.001700.053632includedHepG2SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRAM1 is not avaliable on ENCORE database.